Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0014356

Physical Location & Seq

Genomic Coordinates Reverse (-)

37938660 .. 37939259

Gene Structure 600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0236800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGAACCACAAAGCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTTGTAGGCGGAGCAGGTGGACTCCCACTACAGATCAGATAAGAATCCTCAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTATAGAGCAGGTTCAGAGGATCTGTCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCTGGAGAAGCAGAAGAAGAGGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGAGCTTACTACTTCCGATGGAGGTGGCGATCACGGTGGTGGCTCTCACATTTCCCTTAAGCTCAGCCTTTCTTGCGAGGGCAAAGCTGGAAAAAGTTTCCGGAGCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001101 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005795 GO:0006725 GO:0006778 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009941 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0020037 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031984 GO:0033013 GO:0033993 GO:0042170 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046906 GO:0048037 GO:0050896 GO:0051186 GO:0071704 GO:0097159 GO:0097305 GO:0098588 GO:0098791 GO:0098827 GO:1901360 GO:1901363 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04080 ko04214 ko04979 ko05166 map04080 map04214 map04979 map05166

Pfam Domains

Protein Families

TspO_MBR

Protein Analysis

140

Amino Acids

15.82

Weight (kDa)

9.86

Isoelectric Point (pI)

77.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	27 - 89	2.2e-09	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47770
fragaria_vesca	FvH4_2g25400
malus_domestica	MD03G1285300.v1.1 MD11G1304700.v1.1
prunus_persica	Prupe.8G258500_v2.0.a1
pyrus_communis	pycom03g22620 pycom11g26650
rosa_chinensis	RchiOBHm_Chr6g0293581
rosa_laevigata	RLG00000011939
rosa_multiflora	Rmu_sc0006269.1_g000004
rosa_roxburghii	Rroxscaffold_7G00174070
rosa_rugosa	Rorug06G0236800
rosa_samantha	Rh6AG349400 Rh6BG356800 Rh6CG363500 Rh6DG350400
rosa_wichuraiana	Rw6G030400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	78
Acc36I	ACCTGC	2 cut(s)	78, 160
AccIII	TCCGGA	1 cut(s)	411
AciI	CCGC	2 cut(s)	82, 418
AclWI	GGATC	1 cut(s)	188
AfaI	GTAC	1 cut(s)	203
AflII	CTTAAG	1 cut(s)	368
AgsI	TTSAA	1 cut(s)	220
AleI	CACNNNNGTG	1 cut(s)	348
AluBI	AGCT	5 cut(s)	130, 193, 316, 373, 398
AluI	AGCT	5 cut(s)	130, 193, 316, 373, 398
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	1 cut(s)	188
Aor13HI	TCCGGA	1 cut(s)	411
ApeKI	GCWGC	1 cut(s)	50
AspS9I	GGNCC	2 cut(s)	153, 276
AsuC2I	CCSGG	1 cut(s)	55
AvaII	GGWCC	2 cut(s)	153, 276
BaeGI	GKGCMC	1 cut(s)	300
BanII	GRGCYC	1 cut(s)	256
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	2 cut(s)	26, 323
BceAI	ACGGC	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	191
BfmI	CTRYAG	2 cut(s)	102, 162
BfrI	CTTAAG	1 cut(s)	368
BfuAI	ACCTGC	2 cut(s)	78, 160
BisI	GCNGC	2 cut(s)	51, 418
BlpI	GCTNAGC	1 cut(s)	374
BlsI	GCNGC	2 cut(s)	52, 419
Bme1390I	CCNGG	1 cut(s)	55
Bme18I	GGWCC	2 cut(s)	153, 276
BmgT120I	GGNCC	2 cut(s)	153, 276
BmiI	GGNNCC	3 cut(s)	6, 155, 416
BmrFI	CCNGG	1 cut(s)	55
BpmI	CTGGAG	2 cut(s)	173, 278
Bpu1102I	GCTNAGC	1 cut(s)	374
BpuEI	CTTGAG	1 cut(s)	107
BpuMI	CCSGG	1 cut(s)	55
BsaBI	GATNNNNATC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	411
Bse8I	GATNNNNATC	1 cut(s)	116
BseAI	TCCGGA	1 cut(s)	411
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	37, 292
BseJI	GATNNNNATC	1 cut(s)	116
BseMII	CTCAG	1 cut(s)	388
BseSI	GKGCMC	1 cut(s)	300
BseXI	GCAGC	1 cut(s)	62
BsiSI	CCGG	2 cut(s)	54, 412
BslFI	GGGAC	1 cut(s)	139
BsmAI	GTCTC	1 cut(s)	191
BsmFI	GGGAC	1 cut(s)	139
Bsp1286I	GDGCHC	2 cut(s)	256, 300
Bsp13I	TCCGGA	1 cut(s)	411
Bsp143I	GATC	5 cut(s)	106, 180, 210, 308, 340
Bsp1720I	GCTNAGC	1 cut(s)	374
BspACI	CCGC	2 cut(s)	82, 418
BspCNI	CTCAG	1 cut(s)	387
BspEI	TCCGGA	1 cut(s)	411
BspLI	GGNNCC	3 cut(s)	6, 155, 416
BspMI	ACCTGC	2 cut(s)	78, 160
BspPI	GGATC	1 cut(s)	188
BspTI	CTTAAG	1 cut(s)	368
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	5 cut(s)	106, 180, 210, 308, 340
Bst4CI	ACNGT	1 cut(s)	347
Bst6I	CTCTTC	1 cut(s)	266
BstAFI	CTTAAG	1 cut(s)	368
BstC8I	GCNNGC	1 cut(s)	17
BstDEI	CTNAG	1 cut(s)	374
BstF5I	GGATG	2 cut(s)	37, 292
BstKTI	GATC	5 cut(s)	109, 183, 213, 311, 343
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	5 cut(s)	106, 180, 210, 308, 340
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 384
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	53
BstSFI	CTRYAG	2 cut(s)	102, 162
BstSLI	GKGCMC	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	62
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BtsCI	GGATG	2 cut(s)	37, 292
BveI	ACCTGC	2 cut(s)	78, 160
Cac8I	GCNNGC	1 cut(s)	17
Cfr13I	GGNCC	2 cut(s)	153, 276
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	3 cut(s)	70, 293, 301
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	374
DpnI	GATC	5 cut(s)	108, 182, 212, 310, 342
DpnII	GATC	5 cut(s)	106, 180, 210, 308, 340
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
EciI	GGCGGA	1 cut(s)	97
Eco24I	GRGCYC	1 cut(s)	256
Eco47I	GGWCC	2 cut(s)	153, 276
EcoO109I	RGGNCCY	1 cut(s)	153
EcoT38I	GRGCYC	1 cut(s)	256
FaeI	CATG	3 cut(s)	73, 296, 304
FaiI	YATR	4 cut(s)	71, 164, 294, 302
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	3 cut(s)	69, 292, 300
Fnu4HI	GCNGC	2 cut(s)	51, 418
FokI	GGATG	2 cut(s)	44, 299
FriOI	GRGCYC	1 cut(s)	256
Fsp4HI	GCNGC	2 cut(s)	51, 418
GluI	GCNGC	2 cut(s)	51, 418
GsuI	CTGGAG	2 cut(s)	173, 278
HapII	CCGG	2 cut(s)	54, 412
Hin1II	CATG	3 cut(s)	73, 296, 304
HinfI	GANTC	2 cut(s)	94, 117
HpaII	CCGG	2 cut(s)	54, 412
Hpy166II	GTNNAC	3 cut(s)	93, 244, 279
Hpy188I	TCNGA	5 cut(s)	111, 177, 286, 313, 328
Hpy188III	TCNNGA	4 cut(s)	220, 241, 257, 412
Hpy8I	GTNNAC	3 cut(s)	93, 244, 279
HpyCH4III	ACNGT	1 cut(s)	347
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	1 cut(s)	304
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 384
HpyF3I	CTNAG	1 cut(s)	374
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	3 cut(s)	73, 296, 304
Kpn2I	TCCGGA	1 cut(s)	411
Kzo9I	GATC	5 cut(s)	106, 180, 210, 308, 340
LmnI	GCTCC	3 cut(s)	84, 127, 414
LpnPI	CCDG	7 cut(s)	29, 67, 73, 155, 203, 242, 384
Lsp1109I	GCAGC	1 cut(s)	62
MaeII	ACGT	1 cut(s)	225
MalI	GATC	5 cut(s)	108, 182, 212, 310, 342
MboI	GATC	5 cut(s)	106, 180, 210, 308, 340
MboII	GAAGA	2 cut(s)	280, 283
MflI	RGATCY	1 cut(s)	180
MhlI	GDGCHC	2 cut(s)	256, 300
MlyI	GAGTC	1 cut(s)	88
MnlI	CCTC	7 cut(s)	22, 29, 131, 171, 267, 326, 382
MroI	TCCGGA	1 cut(s)	411
MseI	TTAA	1 cut(s)	369
MslI	CAYNNNNRTG	1 cut(s)	348
MspA1I	CMGCKG	2 cut(s)	193, 420
MspCI	CTTAAG	1 cut(s)	368
MspI	CCGG	2 cut(s)	54, 412
MspR9I	CCNGG	1 cut(s)	55
MwoI	GCNNNNNNNGC	2 cut(s)	79, 384
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	5 cut(s)	106, 180, 210, 308, 340
NlaIII	CATG	3 cut(s)	73, 296, 304
NlaIV	GGNNCC	3 cut(s)	6, 155, 416
NspI	RCATGY	1 cut(s)	73
OliI	CACNNNNGTG	1 cut(s)	348
PaqCI	CACCTGC	1 cut(s)	78
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	117
PkrI	GCNGC	2 cut(s)	52, 419
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PpuMI	RGGWCCY	1 cut(s)	153
Psp5II	RGGWCCY	1 cut(s)	153
PspN4I	GGNNCC	3 cut(s)	6, 155, 416
PspPI	GGNCC	2 cut(s)	153, 276
PspPPI	RGGWCCY	1 cut(s)	153
PsuI	RGATCY	1 cut(s)	180
PvuII	CAGCTG	1 cut(s)	193
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	348
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	2 cut(s)	51, 418
Sau3AI	GATC	5 cut(s)	106, 180, 210, 308, 340
Sau96I	GGNCC	2 cut(s)	153, 276
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	2 cut(s)	256, 300
SfcI	CTRYAG	2 cut(s)	102, 162
SinI	GGWCC	2 cut(s)	153, 276
SmiMI	CAYNNNNRTG	1 cut(s)	348
SmlI	CTYRAG	2 cut(s)	122, 368
SmoI	CTYRAG	2 cut(s)	122, 368
SsiI	CCGC	2 cut(s)	82, 418
StyD4I	CCNGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	347
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	1 cut(s)	213
TauI	GCSGC	1 cut(s)	420
TfiI	GAWTC	1 cut(s)	117
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	1 cut(s)	281
Vha464I	CTTAAG	1 cut(s)	368
VpaK11BI	GGWCC	2 cut(s)	153, 276
XceI	RCATGY	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.