Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0014356

Physical Location & Seq

Genomic Coordinates Forward (+)

36506414 .. 36506992

Gene Structure 579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1285300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGATAATTTTTCCGACCACCTCAAGCAACGCAGGGCAGATGATCCTACGACCGCCGCCGTGGCCACCGCCACGAACAAGAGCGGTCACAGAAGCAAAAAGGACATGAAAATGGACATGGCCAAACGCGGCCTTAGGTCCCTATCCGTGGCAGTCGCAATCCCCGTCTCTCTCCATCTCCTGGCTATCTACGCGGGCTCATCCGACCCATATCGCATCGGATCCAAGCCCTTCTGGATCCCTCCCCTGTGGGCCCTGCGGTTAACCTGCATAGCCTCCAGCCTTCTCATGGGCCTGGCTGCTTGGCTCGTGTGGGCGGAAGGTGGGTTCCACAAGAATCCGATGGCTCTGCCCATTTACTTGGCCCAGCTAGGGTTGAGTTTGATTTGGGATCCGATTGTGTTCGGGGCGGGGGCTCCGTGGGTCGGGTTGATCGTGTGCATGGGGATGTTCGGGACGATGATCGGATGTTCTCGGGTGTTTAAGGGTGTGAATCCGGTCGCTGCCGATCTTATGAAGCCGAGTTTGGCGTGGGTTGCGTTTTTGGCCGTCGTAAATCTTAAGCTTGTATTCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001101 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005795 GO:0006725 GO:0006778 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009941 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0020037 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031984 GO:0033013 GO:0033993 GO:0042170 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046906 GO:0048037 GO:0050896 GO:0051186 GO:0071704 GO:0097159 GO:0097305 GO:0098588 GO:0098791 GO:0098827 GO:1901360 GO:1901363 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04080 ko04214 ko04979 ko05166 map04080 map04214 map04979 map05166

Pfam Domains

Protein Families

TspO_MBR

Protein Analysis

193

Amino Acids

20.83

Weight (kDa)

9.79

Isoelectric Point (pI)

30.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TspO_MBR	PF03073	52 - 189	3.2e-31	TspO/MBR family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47770
fragaria_vesca	FvH4_2g25400
malus_domestica	MD03G1285300.v1.1 MD11G1304700.v1.1
prunus_persica	Prupe.8G258500_v2.0.a1
pyrus_communis	pycom03g22620 pycom11g26650
rosa_chinensis	RchiOBHm_Chr6g0293581
rosa_laevigata	RLG00000011939
rosa_multiflora	Rmu_sc0006269.1_g000004
rosa_roxburghii	Rroxscaffold_7G00174070
rosa_rugosa	Rorug06G0236800
rosa_samantha	Rh6AG349400 Rh6BG356800 Rh6CG363500 Rh6DG350400
rosa_wichuraiana	Rw6G030400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	275
AccB7I	CCANNNNNTGG	1 cut(s)	181
AccBSI	CCGCTC	1 cut(s)	84
AccII	CGCG	2 cut(s)	129, 194
AciI	CCGC	9 cut(s)	54, 57, 69, 84, 129, 194, 259, 317, 410
AclWI	GGATC	7 cut(s)	38, 216, 229, 232, 245, 386, 399
AcoI	YGGCCR	3 cut(s)	63, 120, 546
AfiI	CCNNNNNNNGG	5 cut(s)	148, 181, 289, 372, 425
AflII	CTTAAG	1 cut(s)	560
AjnI	CCWGG	2 cut(s)	180, 294
AjuI	GAANNNNNNNTTGG	2 cut(s)	509, 541
AloI	GAACNNNNNNTCC	2 cut(s)	311, 343
AluBI	AGCT	2 cut(s)	370, 565
AluI	AGCT	2 cut(s)	370, 565
Alw26I	GTCTC	1 cut(s)	172
AlwI	GGATC	7 cut(s)	38, 216, 229, 232, 245, 386, 399
Ama87I	CYCGRG	1 cut(s)	474
AoxI	GGCC	7 cut(s)	63, 120, 130, 252, 292, 363, 546
ApaI	GGGCCC	1 cut(s)	256
ApeKI	GCWGC	2 cut(s)	299, 503
AspS9I	GGNCC	5 cut(s)	138, 252, 253, 292, 364
AvaI	CYCGRG	1 cut(s)	474
AvaII	GGWCC	1 cut(s)	138
AxyI	CCTNAGG	1 cut(s)	134
BaeGI	GKGCMC	1 cut(s)	256
BalI	TGGCCA	2 cut(s)	65, 122
BamHI	GGATCC	3 cut(s)	221, 237, 391
BanII	GRGCYC	3 cut(s)	200, 256, 418
BauI	CACGAG	1 cut(s)	308
BbvI	GCAGC	2 cut(s)	286, 490
BccI	CCATC	2 cut(s)	183, 337
BceAI	ACGGC	2 cut(s)	44, 533
BcgI	CGANNNNNNTGC	2 cut(s)	331, 365
BciT130I	CCWGG	2 cut(s)	182, 296
BcoDI	GTCTC	1 cut(s)	172
BfaI	CTAG	1 cut(s)	371
BfrI	CTTAAG	1 cut(s)	560
BfuAI	ACCTGC	1 cut(s)	275
BglI	GCCNNNNNGGC	1 cut(s)	62
BisI	GCNGC	4 cut(s)	57, 130, 300, 504
BlsI	GCNGC	4 cut(s)	58, 131, 301, 505
Bme1390I	CCNGG	2 cut(s)	182, 296
Bme18I	GGWCC	1 cut(s)	138
BmeT110I	CYCGRG	1 cut(s)	474
BmgT120I	GGNCC	5 cut(s)	138, 252, 253, 292, 364
BmiI	GGNNCC	7 cut(s)	140, 223, 239, 254, 329, 393, 417
BmrFI	CCNGG	2 cut(s)	182, 296
BmsI	GCATC	1 cut(s)	225
BpmI	CTGGAG	1 cut(s)	262
BpuEI	CTTGAG	1 cut(s)	8
BsaJI	CCNNGG	3 cut(s)	60, 147, 419
BsaWI	WCCGGW	1 cut(s)	496
Bsc4I	CCNNNNNNNGG	5 cut(s)	148, 181, 289, 372, 425
Bse21I	CCTNAGG	1 cut(s)	134
BseBI	CCWGG	2 cut(s)	182, 296
BseDI	CCNNGG	3 cut(s)	60, 147, 419
BseGI	GGATG	3 cut(s)	200, 453, 473
BseLI	CCNNNNNNNGG	5 cut(s)	148, 181, 289, 372, 425
BseSI	GKGCMC	1 cut(s)	256
BseXI	GCAGC	2 cut(s)	286, 490
BseYI	CCCAGC	1 cut(s)	366
Bsh1236I	CGCG	2 cut(s)	129, 194
Bsh1285I	CGRYCG	2 cut(s)	54, 501
BshFI	GGCC	7 cut(s)	65, 122, 132, 254, 294, 365, 548
BsiEI	CGRYCG	2 cut(s)	54, 501
BsiHKCI	CYCGRG	1 cut(s)	474
BsiSI	CCGG	1 cut(s)	497
BslFI	GGGAC	2 cut(s)	124, 469
BslI	CCNNNNNNNGG	5 cut(s)	148, 181, 289, 372, 425
BsmAI	GTCTC	1 cut(s)	172
BsmBI	CGTCTC	1 cut(s)	172
BsmFI	GGGAC	2 cut(s)	124, 469
BsnI	GGCC	7 cut(s)	65, 122, 132, 254, 294, 365, 548
BsoBI	CYCGRG	1 cut(s)	474
Bsp120I	GGGCCC	1 cut(s)	252
Bsp1286I	GDGCHC	3 cut(s)	200, 256, 418
Bsp143I	GATC	7 cut(s)	43, 221, 237, 391, 432, 462, 508
BspACI	CCGC	9 cut(s)	54, 57, 69, 84, 129, 194, 259, 317, 410
BspANI	GGCC	7 cut(s)	65, 122, 132, 254, 294, 365, 548
BspFNI	CGCG	2 cut(s)	129, 194
BspLI	GGNNCC	7 cut(s)	140, 223, 239, 254, 329, 393, 417
BspMI	ACCTGC	1 cut(s)	275
BspPI	GGATC	7 cut(s)	38, 216, 229, 232, 245, 386, 399
BspTI	CTTAAG	1 cut(s)	560
BsrBI	CCGCTC	1 cut(s)	84
BssECI	CCNNGG	3 cut(s)	60, 147, 419
BssMI	GATC	7 cut(s)	43, 221, 237, 391, 432, 462, 508
BssSI	CACGAG	1 cut(s)	308
Bst2BI	CACGAG	1 cut(s)	308
Bst2UI	CCWGG	2 cut(s)	182, 296
BstAFI	CTTAAG	1 cut(s)	560
BstC8I	GCNNGC	1 cut(s)	196
BstDEI	CTNAG	1 cut(s)	134
BstDSI	CCRYGG	3 cut(s)	60, 147, 419
BstF5I	GGATG	3 cut(s)	200, 453, 473
BstFNI	CGCG	2 cut(s)	129, 194
BstKTI	GATC	7 cut(s)	46, 224, 240, 394, 435, 465, 511
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	7 cut(s)	43, 221, 237, 391, 432, 462, 508
BstMCI	CGRYCG	2 cut(s)	54, 501
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 191, 536, 545
BstNI	CCWGG	2 cut(s)	182, 296
BstSCI	CCNGG	2 cut(s)	180, 294
BstSLI	GKGCMC	1 cut(s)	256
BstUI	CGCG	2 cut(s)	129, 194
BstV1I	GCAGC	2 cut(s)	286, 490
BstX2I	RGATCY	3 cut(s)	221, 237, 391
BstXI	CCANNNNNNTGG	1 cut(s)	361
BstYI	RGATCY	3 cut(s)	221, 237, 391
Bsu36I	CCTNAGG	1 cut(s)	134
BsuRI	GGCC	7 cut(s)	65, 122, 132, 254, 294, 365, 548
BtgI	CCRYGG	3 cut(s)	60, 147, 419
BtsCI	GGATG	3 cut(s)	200, 453, 473
BtsIMutI	CAGTG	1 cut(s)	574
BveI	ACCTGC	1 cut(s)	275
Cac8I	GCNNGC	1 cut(s)	196
Cfr13I	GGNCC	5 cut(s)	138, 252, 253, 292, 364
CviAII	CATG	4 cut(s)	106, 118, 289, 442
DdeI	CTNAG	1 cut(s)	134
DpnI	GATC	7 cut(s)	45, 223, 239, 393, 434, 464, 510
DpnII	GATC	7 cut(s)	43, 221, 237, 391, 432, 462, 508
EaeI	YGGCCR	3 cut(s)	63, 120, 546
EciI	GGCGGA	1 cut(s)	332
Eco24I	GRGCYC	3 cut(s)	200, 256, 418
Eco47I	GGWCC	1 cut(s)	138
Eco81I	CCTNAGG	1 cut(s)	134
Eco88I	CYCGRG	1 cut(s)	474
EcoO109I	RGGNCCY	2 cut(s)	138, 253
EcoRII	CCWGG	2 cut(s)	180, 294
EcoT38I	GRGCYC	3 cut(s)	200, 256, 418
Esp3I	CGTCTC	1 cut(s)	172
FaeI	CATG	4 cut(s)	109, 121, 292, 445
FaiI	YATR	7 cut(s)	107, 119, 211, 272, 290, 443, 515
FaqI	GGGAC	2 cut(s)	124, 469
FatI	CATG	4 cut(s)	105, 117, 288, 441
FauI	CCCGC	2 cut(s)	187, 403
Fnu4HI	GCNGC	4 cut(s)	57, 130, 300, 504
FokI	GGATG	3 cut(s)	187, 460, 480
FriOI	GRGCYC	3 cut(s)	200, 256, 418
Fsp4HI	GCNGC	4 cut(s)	57, 130, 300, 504
FspBI	CTAG	1 cut(s)	371
GluI	GCNGC	4 cut(s)	57, 130, 300, 504
GsaI	CCCAGC	1 cut(s)	370
GsuI	CTGGAG	1 cut(s)	262
HaeIII	GGCC	7 cut(s)	65, 122, 132, 254, 294, 365, 548
HapII	CCGG	1 cut(s)	497
Hin1II	CATG	4 cut(s)	109, 121, 292, 445
HincII	GTYRAC	1 cut(s)	264
HindII	GTYRAC	1 cut(s)	264
HindIII	AAGCTT	1 cut(s)	563
HinfI	GANTC	2 cut(s)	337, 493
HpaI	GTTAAC	1 cut(s)	264
HpaII	CCGG	1 cut(s)	497
Hpy166II	GTNNAC	1 cut(s)	264
Hpy188I	TCNGA	6 cut(s)	16, 205, 221, 342, 396, 467
Hpy188III	TCNNGA	2 cut(s)	235, 454
Hpy8I	GTNNAC	1 cut(s)	264
Hpy99I	CGWCG	1 cut(s)	554
HpyAV	CCTTC	3 cut(s)	241, 293, 314
HpyCH4V	TGCA	2 cut(s)	270, 441
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 191, 536, 545
HpyF3I	CTNAG	1 cut(s)	134
Hsp92II	CATG	4 cut(s)	109, 121, 292, 445
KspAI	GTTAAC	1 cut(s)	264
Kzo9I	GATC	7 cut(s)	43, 221, 237, 391, 432, 462, 508
LmnI	GCTCC	1 cut(s)	421
Lsp1109I	GCAGC	2 cut(s)	286, 490
LweI	GCATC	1 cut(s)	225
MaeI	CTAG	1 cut(s)	371
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	7 cut(s)	45, 223, 239, 393, 434, 464, 510
MbiI	CCGCTC	1 cut(s)	84
MboI	GATC	7 cut(s)	43, 221, 237, 391, 432, 462, 508
MflI	RGATCY	3 cut(s)	221, 237, 391
MhlI	GDGCHC	3 cut(s)	200, 256, 418
MlsI	TGGCCA	2 cut(s)	65, 122
MluCI	AATT	1 cut(s)	7
MluNI	TGGCCA	2 cut(s)	65, 122
MmeI	TCCRAC	2 cut(s)	39, 228
MnlI	CCTC	3 cut(s)	32, 252, 286
Mox20I	TGGCCA	2 cut(s)	65, 122
MscI	TGGCCA	2 cut(s)	65, 122
MseI	TTAA	3 cut(s)	263, 483, 561
MslI	CAYNNNNRTG	2 cut(s)	110, 446
Msp20I	TGGCCA	2 cut(s)	65, 122
MspCI	CTTAAG	1 cut(s)	560
MspI	CCGG	1 cut(s)	497
MspR9I	CCNGG	2 cut(s)	182, 296
MvaI	CCWGG	2 cut(s)	182, 296
MvnI	CGCG	2 cut(s)	129, 194
MwoI	GCNNNNNNNGC	4 cut(s)	62, 191, 536, 545
NdeII	GATC	7 cut(s)	43, 221, 237, 391, 432, 462, 508
NlaIII	CATG	4 cut(s)	109, 121, 292, 445
NlaIV	GGNNCC	7 cut(s)	140, 223, 239, 254, 329, 393, 417
NmeAIII	GCCGAG	1 cut(s)	546
NmuCI	GTSAC	1 cut(s)	86
PcsI	WCGNNNNNNNCGW	2 cut(s)	162, 432
PfeI	GAWTC	2 cut(s)	337, 493
PflMI	CCANNNNNTGG	1 cut(s)	181
PkrI	GCNGC	4 cut(s)	58, 131, 301, 505
PpuMI	RGGWCCY	1 cut(s)	138
Psp5II	RGGWCCY	1 cut(s)	138
Psp6I	CCWGG	2 cut(s)	180, 294
PspFI	CCCAGC	1 cut(s)	366
PspGI	CCWGG	2 cut(s)	180, 294
PspN4I	GGNNCC	7 cut(s)	140, 223, 239, 254, 329, 393, 417
PspOMI	GGGCCC	1 cut(s)	252
PspPI	GGNCC	5 cut(s)	138, 252, 253, 292, 364
PspPPI	RGGWCCY	1 cut(s)	138
PsuI	RGATCY	3 cut(s)	221, 237, 391
RseI	CAYNNNNRTG	2 cut(s)	110, 446
SaqAI	TTAA	3 cut(s)	263, 483, 561
SatI	GCNGC	4 cut(s)	57, 130, 300, 504
Sau3AI	GATC	7 cut(s)	43, 221, 237, 391, 432, 462, 508
Sau96I	GGNCC	5 cut(s)	138, 252, 253, 292, 364
ScrFI	CCNGG	2 cut(s)	182, 296
SduI	GDGCHC	3 cut(s)	200, 256, 418
SetI	ASST	6 cut(s)	24, 140, 269, 325, 372, 567
SfaNI	GCATC	1 cut(s)	225
SinI	GGWCC	1 cut(s)	138
SmiMI	CAYNNNNRTG	2 cut(s)	110, 446
SmlI	CTYRAG	2 cut(s)	23, 560
SmoI	CTYRAG	2 cut(s)	23, 560
Sse9I	AATT	1 cut(s)	7
SsiI	CCGC	9 cut(s)	54, 57, 69, 84, 129, 194, 259, 317, 410
SspMI	CTAG	1 cut(s)	371
StyD4I	CCNGG	2 cut(s)	180, 294
TasI	AATT	1 cut(s)	7
TauI	GCSGC	2 cut(s)	59, 132
TfiI	GAWTC	2 cut(s)	337, 493
Tru1I	TTAA	3 cut(s)	263, 483, 561
Tru9I	TTAA	3 cut(s)	263, 483, 561
TseFI	GTSAC	1 cut(s)	86
TseI	GCWGC	2 cut(s)	299, 503
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	2 cut(s)	122, 530
TspGWI	ACGGA	2 cut(s)	136, 408
Van91I	CCANNNNNTGG	1 cut(s)	181
Vha464I	CTTAAG	1 cut(s)	560
VpaK11BI	GGWCC	1 cut(s)	138
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286
XspI	CTAG	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.