AT2G47920

KIP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011747
Physical Location & Seq
Forward (+)
19615777 .. 19616904
1128 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G47920.2

Sequence Viewer

Length: 678 bp
ATGGTTAGAGAAGAGGAGAAATCGAGATGGTGGTGGTTCGAGAGCCACAAGAGCTCCAAACATTCTCAATGGCTTCAATCAACACTCGCTGAGATTGATGCAAAGACAAAGGCAATGTTGAAGTTGTTAGACGGAAACGCAGACTCTTTCGCTCAGCGTGCTGAGACTTACTACAAGAAACGTCCTGAGCTTATCAGCTTTGTCGAAGACTTTTATCGAGCTCACCGTTCCTTAGCCGTGAACTTCGACCACCTCAAGTCTTCCGACCACTATGGATCTCGCTCCGCTAAGGTTCCCCAACAATCCATGGAGTCCGTTTGTGACAGCAATTCTCACTTTGAAGATGCCGATTCTGAGATTGAAGACCCCCTTCAAGATGATGCCTCCGCAGCTGATTGCAAAGAAGATGAGACTTGGCAATTGGAACAAGAAAGGTTGAAGCTGATCGAAGAGACTGATGCTCTGAGGAAACAGCTCTTAGACAAGGACGAAGAGAAGAGAGAGGTCATCAGACAGCTTTCTCTAACCCTTGAGACCCTCAAAGACGAGAACTTGAGCCTCAAGAGACGCCTTGCCCACCATTCTCTCAAGCAACGCACCGTTTTGGAGTTCAAGCCACTAAACAAGTTCTTTGGGAAGCTGTTTTACATTATGTGCGATGGCAACAAGGTCCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIP1

Protein Analysis

225

Amino Acids

26.49

Weight (kDa)

5.69

Isoelectric Point (pI)

64.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIP1 PF07765 10 - 83 4.4e-33 KIP1-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011747)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47920 AT2G47920
fragaria_vesca FvH4_4g22860
malus_domestica MD16G1128900.v1.1
prunus_persica Prupe.1G217400_v2.0.a1
pyrus_communis pycom06g01800 pycom11g08510 pycom16g10930
rosa_chinensis RchiOBHm_Chr4g0429101
rosa_laevigata RLG00000007097
rosa_multiflora Rmu_sc0000846.1_g000015 Rmu_sc0008629.1_g000028
rosa_roxburghii Rroxscaffold_5G00370730
rosa_rugosa Rorug04G0233100
rosa_samantha Rh4AG288900 Rh4BG294900 Rh4CG310400 Rh4DG291900
rosa_wichuraiana Rw4G025030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 285, 387
AclWI GGATC 1 cut(s) 283
AcyI GRCGYC 1 cut(s) 568
AgsI TTSAA 7 cut(s) 77, 121, 341, 362, 374, 439, 613
AluBI AGCT 9 cut(s) 54, 190, 198, 221, 392, 442, 475, 517, 640
AluI AGCT 9 cut(s) 54, 190, 198, 221, 392, 442, 475, 517, 640
Alw21I GWGCWC 2 cut(s) 56, 223
Alw26I GTCTC 5 cut(s) 158, 404, 446, 527, 559
AlwI GGATC 1 cut(s) 283
ApeKI GCWGC 1 cut(s) 389
AspS9I GGNCC 1 cut(s) 670
AsuHPI GGTGA 1 cut(s) 215
AvaII GGWCC 1 cut(s) 670
BanII GRGCYC 2 cut(s) 56, 223
BarI GAAGNNNNNNTAC 2 cut(s) 629, 661
BbsI GAAGAC 3 cut(s) 213, 252, 369
Bbv12I GWGCWC 2 cut(s) 56, 223
BbvI GCAGC 1 cut(s) 401
BccI CCATC 2 cut(s) 21, 653
BceAI ACGGC 1 cut(s) 221
BcoDI GTCTC 5 cut(s) 158, 404, 446, 527, 559
BisI GCNGC 1 cut(s) 390
BlpI GCTNAGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 391
Bme18I GGWCC 1 cut(s) 670
BmgT120I GGNCC 1 cut(s) 670
BmiI GGNNCC 1 cut(s) 294
BmsI GCATC 4 cut(s) 88, 334, 370, 448
BpiI GAAGAC 3 cut(s) 213, 252, 369
Bpu10I CCTNAGC 3 cut(s) 186, 232, 288
Bpu1102I GCTNAGC 1 cut(s) 153
BpuEI CTTGAG 5 cut(s) 239, 545, 551, 572, 574
BsaHI GRCGYC 1 cut(s) 568
BsaI GGTCTC 1 cut(s) 527
BsaJI CCNNGG 1 cut(s) 306
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bse3DI GCAATG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 306
BseMI GCAATG 1 cut(s) 120
BseMII CTCAG 6 cut(s) 81, 153, 167, 177, 345, 455
BseRI GAGGAG 1 cut(s) 29
BseXI GCAGC 1 cut(s) 401
BsiHKAI GWGCWC 2 cut(s) 56, 223
BsmAI GTCTC 5 cut(s) 158, 404, 446, 527, 559
BsmBI CGTCTC 1 cut(s) 559
Bso31I GGTCTC 1 cut(s) 527
Bsp1286I GDGCHC 2 cut(s) 56, 223
Bsp143I GATC 2 cut(s) 275, 444
Bsp1720I GCTNAGC 1 cut(s) 153
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 2 cut(s) 285, 387
BspCNI CTCAG 6 cut(s) 82, 154, 166, 178, 346, 456
BspLI GGNNCC 1 cut(s) 294
BspPI GGATC 1 cut(s) 283
BspTNI GGTCTC 1 cut(s) 527
BsrDI GCAATG 1 cut(s) 120
BssECI CCNNGG 1 cut(s) 306
BssMI GATC 2 cut(s) 275, 444
BssNI GRCGYC 1 cut(s) 568
BssT1I CCWWGG 1 cut(s) 306
Bst4CI ACNGT 2 cut(s) 227, 601
Bst6I CTCTTC 4 cut(s) 6, 444, 486, 491
BstACI GRCGYC 1 cut(s) 568
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 9 cut(s) 90, 153, 162, 186, 232, 288, 354, 464, 478
BstDSI CCRYGG 1 cut(s) 306
BstKTI GATC 2 cut(s) 278, 447
BstMAI GTCTC 5 cut(s) 158, 404, 446, 527, 559
BstMBI GATC 2 cut(s) 275, 444
BstMWI GCNNNNNNNGC 3 cut(s) 51, 158, 389
BstV1I GCAGC 1 cut(s) 401
BstV2I GAAGAC 3 cut(s) 213, 252, 369
BstX2I RGATCY 1 cut(s) 275
BstYI RGATCY 1 cut(s) 275
BtgI CCRYGG 1 cut(s) 306
BtgZI GCGATG 1 cut(s) 672
Cac8I GCNNGC 1 cut(s) 159
Cfr13I GGNCC 1 cut(s) 670
CseI GACGC 1 cut(s) 576
CviAII CATG 1 cut(s) 307
DdeI CTNAG 9 cut(s) 90, 153, 162, 186, 232, 288, 354, 464, 478
DpnI GATC 2 cut(s) 277, 446
DpnII GATC 2 cut(s) 275, 444
Eam1104I CTCTTC 4 cut(s) 6, 444, 486, 491
EarI CTCTTC 4 cut(s) 6, 444, 486, 491
Ecl136II GAGCTC 2 cut(s) 54, 221
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 2 cut(s) 56, 223
Eco31I GGTCTC 1 cut(s) 527
Eco47I GGWCC 1 cut(s) 670
Eco53kI GAGCTC 2 cut(s) 54, 221
EcoICRI GAGCTC 2 cut(s) 54, 221
EcoO109I RGGNCCY 1 cut(s) 670
EcoT14I CCWWGG 1 cut(s) 306
EcoT38I GRGCYC 2 cut(s) 56, 223
ErhI CCWWGG 1 cut(s) 306
Esp3I CGTCTC 1 cut(s) 559
FaeI CATG 1 cut(s) 310
FaiI YATR 3 cut(s) 273, 308, 653
FalI AAGNNNNNCTT 2 cut(s) 354, 386
FatI CATG 1 cut(s) 306
Fnu4HI GCNGC 1 cut(s) 390
FriOI GRGCYC 2 cut(s) 56, 223
Fsp4HI GCNGC 1 cut(s) 390
GluI GCNGC 1 cut(s) 390
HgaI GACGC 1 cut(s) 576
Hin1I GRCGYC 1 cut(s) 568
Hin1II CATG 1 cut(s) 310
HinfI GANTC 3 cut(s) 143, 311, 350
HphI GGTGA 1 cut(s) 215
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 4 cut(s) 265, 355, 465, 512
Hpy188III TCNNGA 5 cut(s) 24, 40, 185, 374, 562
Hpy8I GTNNAC 1 cut(s) 241
HpyAV CCTTC 1 cut(s) 380
HpyCH4III ACNGT 2 cut(s) 227, 601
HpyCH4IV ACGT 1 cut(s) 181
HpyCH4V TGCA 2 cut(s) 101, 399
HpyF10VI GCNNNNNNNGC 3 cut(s) 51, 158, 389
HpyF3I CTNAG 9 cut(s) 90, 153, 162, 186, 232, 288, 354, 464, 478
HpySE526I ACGT 1 cut(s) 181
Hsp92I GRCGYC 1 cut(s) 568
Hsp92II CATG 1 cut(s) 310
Kzo9I GATC 2 cut(s) 275, 444
LmnI GCTCC 2 cut(s) 59, 287
LpnPI CCDG 1 cut(s) 198
Lsp1109I GCAGC 1 cut(s) 401
LweI GCATC 4 cut(s) 88, 334, 370, 448
MaeII ACGT 1 cut(s) 181
MaeIII GTNAC 1 cut(s) 320
MalI GATC 2 cut(s) 277, 446
MboI GATC 2 cut(s) 275, 444
MboII GAAGA 9 cut(s) 23, 218, 252, 353, 374, 416, 461, 503, 508
MfeI CAATTG 1 cut(s) 419
MflI RGATCY 1 cut(s) 275
MhlI GDGCHC 2 cut(s) 56, 223
MluCI AATT 2 cut(s) 328, 419
MlyI GAGTC 2 cut(s) 137, 320
MmeI TCCRAC 1 cut(s) 288
MnlI CCTC 7 cut(s) 7, 263, 394, 459, 496, 548, 569
MspA1I CMGCKG 1 cut(s) 392
MunI CAATTG 1 cut(s) 419
MwoI GCNNNNNNNGC 3 cut(s) 51, 158, 389
NcoI CCATGG 1 cut(s) 306
NdeII GATC 2 cut(s) 275, 444
NlaIII CATG 1 cut(s) 310
NlaIV GGNNCC 1 cut(s) 294
NmuCI GTSAC 1 cut(s) 320
PcsI WCGNNNNNNNCGW 1 cut(s) 223
PfeI GAWTC 1 cut(s) 350
PkrI GCNGC 1 cut(s) 391
PleI GAGTC 2 cut(s) 137, 319
PpsI GAGTC 2 cut(s) 137, 319
PpuMI RGGWCCY 1 cut(s) 670
Psp124BI GAGCTC 2 cut(s) 56, 223
Psp5II RGGWCCY 1 cut(s) 670
PspN4I GGNNCC 1 cut(s) 294
PspPI GGNCC 1 cut(s) 670
PspPPI RGGWCCY 1 cut(s) 670
PsuI RGATCY 1 cut(s) 275
PvuII CAGCTG 1 cut(s) 392
SacI GAGCTC 2 cut(s) 56, 223
SatI GCNGC 1 cut(s) 390
Sau3AI GATC 2 cut(s) 275, 444
Sau96I GGNCC 1 cut(s) 670
SchI GAGTC 2 cut(s) 137, 320
SduI GDGCHC 2 cut(s) 56, 223
SfaNI GCATC 4 cut(s) 88, 334, 370, 448
SinI GGWCC 1 cut(s) 670
SmlI CTYRAG 5 cut(s) 254, 530, 553, 560, 587
SmoI CTYRAG 5 cut(s) 254, 530, 553, 560, 587
Sse9I AATT 2 cut(s) 328, 419
SsiI CCGC 2 cut(s) 285, 387
SstI GAGCTC 2 cut(s) 56, 223
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 2 cut(s) 227, 601
TaiI ACGT 1 cut(s) 184
TaqI TCGA 6 cut(s) 23, 39, 204, 217, 246, 447
TasI AATT 2 cut(s) 328, 419
TfiI GAWTC 1 cut(s) 350
TseFI GTSAC 1 cut(s) 320
TseI GCWGC 1 cut(s) 389
Tsp45I GTSAC 1 cut(s) 320
TspGWI ACGGA 2 cut(s) 147, 304
VpaK11BI GGWCC 1 cut(s) 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.