Rh4AG288900

KIP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0011747
Physical Location & Seq
Reverse (-)
60253541 .. 60255328
1788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG288900.1

Sequence Viewer

Length: 846 bp
ATGGTGGATTCAAAAGAGACGTCGACGATGAACAAAGAAGACCAGGCTGCGGCTTTTTCATGGTGGTGGGACAGTCATAATCGTCCCCATCATTCTCAGTGGCTTCAAGCTACCCTCTCTGATTTGGATGAGAAGACTAAACTGATGCTGAATATTATTGAAGAAGATGGAGATTCATTTGCAAAGAGAGCTGAGATGTTTTTTAAAAGAAAACCTGAGCTCATAACGAGGTTGGAAGATTTCTACAAATCGTACCGTTCACTAGCTGAAAACTACGATCAGCTAAGATCTGAATTGATTCAAGCTGCTCAGCTGAGATCATTTTCTTCATTAGACTCCATCAAAGCCCAAACAATCCAAAAATGCGAGAAGGAAATCTCAGGATACTTGAAACTCAAGGCACTACCAAACAGTGCCATTGAAACCGAAACAACATGCAGCTCCGATGATGCTAACTTTTATGAGTACCTGCACAAAAAGCTGGATGATGGGTTGGTGTTGATGAGTAGTGATCACAAGGACTCCTCAGCTGGCAGTGATAAGACTATGAAGGCAGGAGGACTTGATGGCAACATGGACGAGGAATTACGCAGTATAGAGAAGGCAAAAATATGGGAGGAAAAGGTGTCAGAACTGATAGATGAAAACACGCATCAGCAGGAGAAATTGATATCGAGTATTAAGGATAAAAGTGAGACAATCCAGAAGCTAAAGGAAGAGAACAGAATTTTGAGAGCTCAGCTGGCAAGAGCTACTGATACGAAGAAAAACGAACGTCCAAAGTCCAAATCCAAAGGGCCCTCTTTCATTATTGGAAGGCTCACAGGATGCACTCGATCTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIP1

Protein Analysis

281

Amino Acids

32.2

Weight (kDa)

5.97

Isoelectric Point (pI)

55.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIP1 PF07765 20 - 93 2.3e-35 KIP1-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011747)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47920 AT2G47920
fragaria_vesca FvH4_4g22860
malus_domestica MD16G1128900.v1.1
prunus_persica Prupe.1G217400_v2.0.a1
pyrus_communis pycom06g01800 pycom11g08510 pycom16g10930
rosa_chinensis RchiOBHm_Chr4g0429101
rosa_laevigata RLG00000007097
rosa_multiflora Rmu_sc0000846.1_g000015 Rmu_sc0008629.1_g000028
rosa_roxburghii Rroxscaffold_5G00370730
rosa_rugosa Rorug04G0233100
rosa_samantha Rh4AG288900 Rh4BG294900 Rh4CG310400 Rh4DG291900
rosa_wichuraiana Rw4G025030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 23
Acc36I ACCTGC 1 cut(s) 477
AccI GTMKAC 1 cut(s) 23
AciI CCGC 1 cut(s) 50
AcsI RAATTY 1 cut(s) 726
AcyI GRCGYC 1 cut(s) 20
AfaI GTAC 2 cut(s) 254, 467
AfiI CCNNNNNNNGG 1 cut(s) 49
AgsI TTSAA 6 cut(s) 12, 107, 161, 302, 391, 422
AjnI CCWGG 1 cut(s) 42
Alw21I GWGCWC 2 cut(s) 222, 739
Alw26I GTCTC 2 cut(s) 11, 689
AoxI GGCC 1 cut(s) 797
ApaI GGGCCC 1 cut(s) 801
ApeKI GCWGC 3 cut(s) 47, 305, 438
ApoI RAATTY 1 cut(s) 726
ArsI GACNNNNNNTTYG 1 cut(s) 37
Asp700I GAANNNNTTC 1 cut(s) 297
AspS9I GGNCC 2 cut(s) 797, 798
BaeGI GKGCMC 1 cut(s) 801
BanII GRGCYC 3 cut(s) 222, 739, 801
BbsI GAAGAC 2 cut(s) 45, 140
Bbv12I GWGCWC 2 cut(s) 222, 739
BbvCI CCTCAGC 1 cut(s) 526
BbvI GCAGC 3 cut(s) 34, 292, 450
BccI CCATC 5 cut(s) 96, 161, 347, 482, 560
BciT130I CCWGG 1 cut(s) 44
BciVI GTATCC 1 cut(s) 377
BclI TGATCA 1 cut(s) 511
BcoDI GTCTC 2 cut(s) 11, 689
BfaI CTAG 1 cut(s) 263
BfuAI ACCTGC 1 cut(s) 477
BfuI GTATCC 1 cut(s) 377
BglII AGATCT 1 cut(s) 287
BisI GCNGC 4 cut(s) 48, 51, 306, 439
BlpI GCTNAGC 2 cut(s) 309, 738
BlsI GCNGC 4 cut(s) 49, 52, 307, 440
Bme1390I CCNGG 1 cut(s) 44
BmgT120I GGNCC 2 cut(s) 797, 798
BmiI GGNNCC 1 cut(s) 799
BmrFI CCNGG 1 cut(s) 44
BmsI GCATC 4 cut(s) 135, 439, 661, 818
BpiI GAAGAC 2 cut(s) 45, 140
Bpu10I CCTNAGC 2 cut(s) 216, 526
Bpu1102I GCTNAGC 2 cut(s) 309, 738
BpuEI CTTGAG 1 cut(s) 380
BsaHI GRCGYC 1 cut(s) 20
BsaXI ACNNNNNCTCC 3 cut(s) 506, 536, 823
Bsc4I CCNNNNNNNGG 1 cut(s) 49
BseBI CCWGG 1 cut(s) 44
BseGI GGATG 3 cut(s) 133, 490, 833
BseLI CCNNNNNNNGG 1 cut(s) 49
BseMII CTCAG 8 cut(s) 110, 183, 207, 305, 323, 393, 540, 752
BseRI GAGGAG 1 cut(s) 514
BseSI GKGCMC 1 cut(s) 801
BseXI GCAGC 3 cut(s) 34, 292, 450
BsgI GTGCAG 1 cut(s) 455
BshFI GGCC 1 cut(s) 799
BsiHKAI GWGCWC 2 cut(s) 222, 739
BslFI GGGAC 2 cut(s) 69, 83
BslI CCNNNNNNNGG 1 cut(s) 49
BsmAI GTCTC 2 cut(s) 11, 689
BsmBI CGTCTC 1 cut(s) 11
BsmFI GGGAC 2 cut(s) 69, 83
BsnI GGCC 1 cut(s) 799
Bsp120I GGGCCC 1 cut(s) 797
Bsp1286I GDGCHC 3 cut(s) 222, 739, 801
Bsp143I GATC 5 cut(s) 277, 287, 317, 511, 836
Bsp1720I GCTNAGC 2 cut(s) 309, 738
BspACI CCGC 1 cut(s) 50
BspANI GGCC 1 cut(s) 799
BspCNI CTCAG 8 cut(s) 109, 184, 208, 306, 322, 392, 539, 751
BspLI GGNNCC 1 cut(s) 799
BspMI ACCTGC 1 cut(s) 477
BssMI GATC 5 cut(s) 277, 287, 317, 511, 836
BssNI GRCGYC 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 44
Bst4CI ACNGT 3 cut(s) 74, 257, 413
Bst6I CTCTTC 1 cut(s) 711
BstACI GRCGYC 1 cut(s) 20
BstC8I GCNNGC 2 cut(s) 532, 744
BstDEI CTNAG 9 cut(s) 96, 192, 216, 284, 309, 314, 379, 526, 738
BstF5I GGATG 3 cut(s) 133, 490, 833
BstKTI GATC 5 cut(s) 280, 290, 320, 514, 839
BstMAI GTCTC 2 cut(s) 11, 689
BstMBI GATC 5 cut(s) 277, 287, 317, 511, 836
BstMWI GCNNNNNNNGC 3 cut(s) 188, 478, 743
BstNI CCWGG 1 cut(s) 44
BstNSI RCATGY 1 cut(s) 438
BstSCI CCNGG 1 cut(s) 42
BstSLI GKGCMC 1 cut(s) 801
BstV1I GCAGC 3 cut(s) 34, 292, 450
BstV2I GAAGAC 2 cut(s) 45, 140
BstX2I RGATCY 1 cut(s) 287
BstYI RGATCY 1 cut(s) 287
BsuI GTATCC 1 cut(s) 377
BsuRI GGCC 1 cut(s) 799
BtsCI GGATG 3 cut(s) 133, 490, 833
BtsI GCAGTG 1 cut(s) 541
BtsIMutI CAGTG 3 cut(s) 104, 418, 541
BveI ACCTGC 1 cut(s) 477
Cac8I GCNNGC 2 cut(s) 532, 744
Cfr13I GGNCC 2 cut(s) 797, 798
Csp6I GTAC 2 cut(s) 253, 466
CviAII CATG 3 cut(s) 60, 435, 574
CviQI GTAC 2 cut(s) 253, 466
DdeI CTNAG 9 cut(s) 96, 192, 216, 284, 309, 314, 379, 526, 738
DpnI GATC 5 cut(s) 279, 289, 319, 513, 838
DpnII GATC 5 cut(s) 277, 287, 317, 511, 836
DraI TTTAAA 1 cut(s) 205
Eam1104I CTCTTC 1 cut(s) 711
EarI CTCTTC 1 cut(s) 711
Ecl136II GAGCTC 2 cut(s) 220, 737
Eco24I GRGCYC 3 cut(s) 222, 739, 801
Eco32I GATATC 1 cut(s) 672
Eco53kI GAGCTC 2 cut(s) 220, 737
EcoICRI GAGCTC 2 cut(s) 220, 737
EcoO109I RGGNCCY 2 cut(s) 797, 798
EcoRII CCWGG 1 cut(s) 42
EcoRV GATATC 1 cut(s) 672
EcoT38I GRGCYC 3 cut(s) 222, 739, 801
Esp3I CGTCTC 1 cut(s) 11
FaeI CATG 3 cut(s) 63, 438, 577
FaiI YATR 9 cut(s) 61, 78, 224, 436, 462, 548, 575, 596, 613
FaqI GGGAC 2 cut(s) 69, 83
FatI CATG 3 cut(s) 59, 434, 573
FbaI TGATCA 1 cut(s) 511
FblI GTMKAC 1 cut(s) 23
Fnu4HI GCNGC 4 cut(s) 48, 51, 306, 439
FokI GGATG 3 cut(s) 140, 497, 840
FriOI GRGCYC 3 cut(s) 222, 739, 801
Fsp4HI GCNGC 4 cut(s) 48, 51, 306, 439
FspBI CTAG 1 cut(s) 263
GluI GCNGC 4 cut(s) 48, 51, 306, 439
HaeIII GGCC 1 cut(s) 799
Hin1I GRCGYC 1 cut(s) 20
Hin1II CATG 3 cut(s) 63, 438, 577
HincII GTYRAC 1 cut(s) 24
HindII GTYRAC 1 cut(s) 24
HinfI GANTC 5 cut(s) 8, 173, 298, 335, 521
Hpy166II GTNNAC 2 cut(s) 24, 260
Hpy188I TCNGA 4 cut(s) 121, 292, 445, 631
Hpy188III TCNNGA 2 cut(s) 381, 703
Hpy8I GTNNAC 2 cut(s) 24, 260
Hpy99I CGWCG 2 cut(s) 25, 28
HpyAV CCTTC 4 cut(s) 364, 544, 595, 810
HpyCH4III ACNGT 3 cut(s) 74, 257, 413
HpyCH4IV ACGT 2 cut(s) 20, 775
HpyCH4V TGCA 4 cut(s) 182, 438, 472, 831
HpyF10VI GCNNNNNNNGC 3 cut(s) 188, 478, 743
HpyF3I CTNAG 9 cut(s) 96, 192, 216, 284, 309, 314, 379, 526, 738
HpySE526I ACGT 2 cut(s) 20, 775
Hsp92I GRCGYC 1 cut(s) 20
Hsp92II CATG 3 cut(s) 63, 438, 577
Ksp22I TGATCA 1 cut(s) 511
Kzo9I GATC 5 cut(s) 277, 287, 317, 511, 836
LmnI GCTCC 1 cut(s) 446
Lsp1109I GCAGC 3 cut(s) 34, 292, 450
LweI GCATC 4 cut(s) 135, 439, 661, 818
MaeI CTAG 1 cut(s) 263
MaeII ACGT 2 cut(s) 20, 775
MalI GATC 5 cut(s) 279, 289, 319, 513, 838
MboI GATC 5 cut(s) 277, 287, 317, 511, 836
MboII GAAGA 8 cut(s) 50, 145, 173, 176, 248, 318, 728, 775
MflI RGATCY 1 cut(s) 287
MhlI GDGCHC 3 cut(s) 222, 739, 801
MluCI AATT 4 cut(s) 293, 584, 665, 726
MlyI GAGTC 2 cut(s) 329, 515
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 7 cut(s) 125, 222, 535, 551, 574, 610, 811
MroXI GAANNNNTTC 1 cut(s) 297
MseI TTAA 3 cut(s) 204, 681, 844
MslI CAYNNNNRTG 1 cut(s) 64
MspA1I CMGCKG 3 cut(s) 313, 530, 742
MspR9I CCNGG 1 cut(s) 44
MvaI CCWGG 1 cut(s) 44
MwoI GCNNNNNNNGC 3 cut(s) 188, 478, 743
NdeII GATC 5 cut(s) 277, 287, 317, 511, 836
NlaIII CATG 3 cut(s) 63, 438, 577
NlaIV GGNNCC 1 cut(s) 799
NspI RCATGY 1 cut(s) 438
PdmI GAANNNNTTC 1 cut(s) 297
PfeI GAWTC 3 cut(s) 8, 173, 298
PkrI GCNGC 4 cut(s) 49, 52, 307, 440
PleI GAGTC 2 cut(s) 329, 515
PpsI GAGTC 2 cut(s) 329, 515
Psp124BI GAGCTC 2 cut(s) 222, 739
Psp6I CCWGG 1 cut(s) 42
PspGI CCWGG 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 799
PspOMI GGGCCC 1 cut(s) 797
PspPI GGNCC 2 cut(s) 797, 798
PsuI RGATCY 1 cut(s) 287
PvuII CAGCTG 3 cut(s) 313, 530, 742
RsaI GTAC 2 cut(s) 254, 467
RsaNI GTAC 2 cut(s) 253, 466
RseI CAYNNNNRTG 1 cut(s) 64
SacI GAGCTC 2 cut(s) 222, 739
SalI GTCGAC 1 cut(s) 22
SaqAI TTAA 3 cut(s) 204, 681, 844
SatI GCNGC 4 cut(s) 48, 51, 306, 439
Sau3AI GATC 5 cut(s) 277, 287, 317, 511, 836
Sau96I GGNCC 2 cut(s) 797, 798
SchI GAGTC 2 cut(s) 329, 515
ScrFI CCNGG 1 cut(s) 44
SduI GDGCHC 3 cut(s) 222, 739, 801
SfaNI GCATC 4 cut(s) 135, 439, 661, 818
SgrDI CGTCGACG 1 cut(s) 22
SmiMI CAYNNNNRTG 1 cut(s) 64
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
Sse9I AATT 4 cut(s) 293, 584, 665, 726
SsiI CCGC 1 cut(s) 50
SspI AATATT 1 cut(s) 154
SspMI CTAG 1 cut(s) 263
SstI GAGCTC 2 cut(s) 222, 739
StyD4I CCNGG 1 cut(s) 42
TaaI ACNGT 3 cut(s) 74, 257, 413
TaiI ACGT 2 cut(s) 23, 778
TaqI TCGA 3 cut(s) 23, 674, 835
TasI AATT 4 cut(s) 293, 584, 665, 726
TauI GCSGC 1 cut(s) 53
TfiI GAWTC 3 cut(s) 8, 173, 298
Tru1I TTAA 3 cut(s) 204, 681, 844
Tru9I TTAA 3 cut(s) 204, 681, 844
TscAI CASTG 3 cut(s) 104, 418, 541
TseI GCWGC 3 cut(s) 47, 305, 438
TspDTI ATGAA 7 cut(s) 44, 48, 165, 318, 563, 657, 796
TspRI CASTG 3 cut(s) 104, 418, 541
XapI RAATTY 1 cut(s) 726
XceI RCATGY 1 cut(s) 438
XmiI GTMKAC 1 cut(s) 23
XmnI GAANNNNTTC 1 cut(s) 297
XspI CTAG 1 cut(s) 263
ZraI GACGTC 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.