pycom11g08510

KIP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0011747
Physical Location & Seq
Reverse (-)
6600173 .. 6600481
309 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g08510.1

Sequence Viewer

Length: 309 bp
ATGTTGCATGAAAAGATCTCTGAACTCATTGACGAAAATATGCAGCACCGGGCTGAGTTGATAAGGAGAAACAAGGAGAATAGTGAAACAACTGAGCGGCTTTTGTCCCAGGTGCATAAGCTAACGGATGAGAACAAATATTTGAGGATTAATCTGGGAATCCATAAGGATACTACTGATCATACAATTGCAATCCATAAGGATGCTACTGATCATACAATTACAAGGCAAAACAAGCCTCAGTTTTCAAGGTCTAAGTCCATGGGGCCATCTTTCCCTGGAAGGCTCACTGAATGCACTGGAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIP1

Protein Analysis

103

Amino Acids

11.84

Weight (kDa)

7.97

Isoelectric Point (pI)

55.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011747)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47920 AT2G47920
fragaria_vesca FvH4_4g22860
malus_domestica MD16G1128900.v1.1
prunus_persica Prupe.1G217400_v2.0.a1
pyrus_communis pycom06g01800 pycom11g08510 pycom16g10930
rosa_chinensis RchiOBHm_Chr4g0429101
rosa_laevigata RLG00000007097
rosa_multiflora Rmu_sc0000846.1_g000015 Rmu_sc0008629.1_g000028
rosa_roxburghii Rroxscaffold_5G00370730
rosa_rugosa Rorug04G0233100
rosa_samantha Rh4AG288900 Rh4BG294900 Rh4CG310400 Rh4DG291900
rosa_wichuraiana Rw4G025030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 97
AciI CCGC 1 cut(s) 97
AgsI TTSAA 1 cut(s) 249
AjnI CCWGG 2 cut(s) 108, 277
AluBI AGCT 1 cut(s) 121
AluI AGCT 1 cut(s) 121
AoxI GGCC 1 cut(s) 266
ApeKI GCWGC 1 cut(s) 43
AseI ATTAAT 1 cut(s) 150
AspS9I GGNCC 1 cut(s) 266
AsuC2I CCSGG 1 cut(s) 50
BbvI GCAGC 1 cut(s) 55
BccI CCATC 1 cut(s) 277
BciT130I CCWGG 2 cut(s) 110, 279
BciVI GTATCC 1 cut(s) 163
BclI TGATCA 2 cut(s) 178, 211
BcnI CCSGG 1 cut(s) 50
BfuI GTATCC 1 cut(s) 163
BglII AGATCT 1 cut(s) 15
BisI GCNGC 2 cut(s) 44, 98
BlsI GCNGC 2 cut(s) 45, 99
Bme1390I CCNGG 3 cut(s) 50, 110, 279
BmgT120I GGNCC 1 cut(s) 266
BmiI GGNNCC 1 cut(s) 267
BmrFI CCNGG 3 cut(s) 50, 110, 279
BmsI GCATC 1 cut(s) 193
BpuMI CCSGG 1 cut(s) 50
BsaJI CCNNGG 3 cut(s) 108, 261, 277
Bse1I ACTGG 1 cut(s) 304
BseBI CCWGG 2 cut(s) 110, 279
BseDI CCNNGG 3 cut(s) 108, 261, 277
BseGI GGATG 2 cut(s) 133, 208
BseMII CTCAG 3 cut(s) 45, 84, 254
BseNI ACTGG 1 cut(s) 304
BseXI GCAGC 1 cut(s) 55
BshFI GGCC 1 cut(s) 268
BsiSI CCGG 1 cut(s) 49
BslFI GGGAC 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 91
BsmI GAATGC 1 cut(s) 299
BsnI GGCC 1 cut(s) 268
Bsp143I GATC 3 cut(s) 15, 178, 211
Bsp19I CCATGG 1 cut(s) 261
BspACI CCGC 1 cut(s) 97
BspANI GGCC 1 cut(s) 268
BspCNI CTCAG 3 cut(s) 46, 85, 253
BspLI GGNNCC 1 cut(s) 267
BsrBI CCGCTC 1 cut(s) 97
BsrI ACTGG 1 cut(s) 304
BssECI CCNNGG 3 cut(s) 108, 261, 277
BssMI GATC 3 cut(s) 15, 178, 211
BssT1I CCWWGG 1 cut(s) 261
Bst2UI CCWGG 2 cut(s) 110, 279
BstDEI CTNAG 4 cut(s) 54, 93, 240, 255
BstDSI CCRYGG 1 cut(s) 261
BstF5I GGATG 2 cut(s) 133, 208
BstKTI GATC 3 cut(s) 18, 181, 214
BstMBI GATC 3 cut(s) 15, 178, 211
BstMWI GCNNNNNNNGC 1 cut(s) 235
BstNI CCWGG 2 cut(s) 110, 279
BstSCI CCNGG 3 cut(s) 48, 108, 277
BstV1I GCAGC 1 cut(s) 55
BstX2I RGATCY 1 cut(s) 15
BstYI RGATCY 1 cut(s) 15
BsuI GTATCC 1 cut(s) 163
BsuRI GGCC 1 cut(s) 268
BtgI CCRYGG 1 cut(s) 261
BtsCI GGATG 2 cut(s) 133, 208
BtsIMutI CAGTG 2 cut(s) 288, 297
Cfr13I GGNCC 1 cut(s) 266
CviAII CATG 2 cut(s) 8, 262
CviJI RGCY 6 cut(s) 53, 100, 121, 238, 268, 286
CviKI_1 RGCY 6 cut(s) 53, 100, 121, 238, 268, 286
DdeI CTNAG 4 cut(s) 54, 93, 240, 255
DpnI GATC 3 cut(s) 17, 180, 213
DpnII GATC 3 cut(s) 15, 178, 211
Eco130I CCWWGG 1 cut(s) 261
EcoRII CCWGG 2 cut(s) 108, 277
EcoT14I CCWWGG 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 261
FaeI CATG 2 cut(s) 11, 265
FaiI YATR 8 cut(s) 9, 41, 117, 165, 183, 198, 216, 263
FaqI GGGAC 1 cut(s) 91
FatI CATG 2 cut(s) 7, 261
FbaI TGATCA 2 cut(s) 178, 211
Fnu4HI GCNGC 2 cut(s) 44, 98
FokI GGATG 2 cut(s) 140, 215
Fsp4HI GCNGC 2 cut(s) 44, 98
GluI GCNGC 2 cut(s) 44, 98
HaeIII GGCC 1 cut(s) 268
HapII CCGG 1 cut(s) 49
Hin1II CATG 2 cut(s) 11, 265
HinfI GANTC 1 cut(s) 159
HpaII CCGG 1 cut(s) 49
Hpy188I TCNGA 1 cut(s) 22
HpyAV CCTTC 1 cut(s) 276
HpyCH4V TGCA 5 cut(s) 7, 43, 115, 191, 297
HpyF10VI GCNNNNNNNGC 1 cut(s) 235
HpyF3I CTNAG 4 cut(s) 54, 93, 240, 255
Hsp92II CATG 2 cut(s) 11, 265
Ksp22I TGATCA 2 cut(s) 178, 211
Kzo9I GATC 3 cut(s) 15, 178, 211
LpnPI CCDG 7 cut(s) 62, 95, 122, 140, 264, 285, 291
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 1 cut(s) 193
MalI GATC 3 cut(s) 17, 180, 213
MbiI CCGCTC 1 cut(s) 97
MboI GATC 3 cut(s) 15, 178, 211
MfeI CAATTG 1 cut(s) 186
MflI RGATCY 1 cut(s) 15
MluCI AATT 2 cut(s) 186, 219
MnlI CCTC 2 cut(s) 138, 249
MseI TTAA 1 cut(s) 150
MslI CAYNNNNRTG 1 cut(s) 201
MspI CCGG 1 cut(s) 49
MspR9I CCNGG 3 cut(s) 50, 110, 279
MunI CAATTG 1 cut(s) 186
Mva1269I GAATGC 1 cut(s) 299
MvaI CCWGG 2 cut(s) 110, 279
MwoI GCNNNNNNNGC 1 cut(s) 235
NciI CCSGG 1 cut(s) 50
NcoI CCATGG 1 cut(s) 261
NdeII GATC 3 cut(s) 15, 178, 211
NlaIII CATG 2 cut(s) 11, 265
NlaIV GGNNCC 1 cut(s) 267
PctI GAATGC 1 cut(s) 299
PfeI GAWTC 1 cut(s) 159
PkrI GCNGC 2 cut(s) 45, 99
PshBI ATTAAT 1 cut(s) 150
Psp6I CCWGG 2 cut(s) 108, 277
PspGI CCWGG 2 cut(s) 108, 277
PspN4I GGNNCC 1 cut(s) 267
PspPI GGNCC 1 cut(s) 266
PsuI RGATCY 1 cut(s) 15
RseI CAYNNNNRTG 1 cut(s) 201
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 2 cut(s) 44, 98
Sau3AI GATC 3 cut(s) 15, 178, 211
Sau96I GGNCC 1 cut(s) 266
ScrFI CCNGG 3 cut(s) 50, 110, 279
SetI ASST 3 cut(s) 114, 123, 254
SfaNI GCATC 1 cut(s) 193
SmiMI CAYNNNNRTG 1 cut(s) 201
Sse9I AATT 2 cut(s) 186, 219
SsiI CCGC 1 cut(s) 97
SspI AATATT 1 cut(s) 140
StyD4I CCNGG 3 cut(s) 48, 108, 277
StyI CCWWGG 1 cut(s) 261
TasI AATT 2 cut(s) 186, 219
TauI GCSGC 1 cut(s) 100
TfiI GAWTC 1 cut(s) 159
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TscAI CASTG 2 cut(s) 295, 304
TseI GCWGC 1 cut(s) 43
TspDTI ATGAA 1 cut(s) 24
TspGWI ACGGA 1 cut(s) 140
TspRI CASTG 2 cut(s) 295, 304
VspI ATTAAT 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.