pycom06g01800

KIP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0011747
Physical Location & Seq
Reverse (-)
2331524 .. 2331904
381 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g01800.1

Sequence Viewer

Length: 381 bp
ATGGAAGAAGAGAATATTGATCATGGTGTAGAAAGTGATGGTAATGTGGTTGAAAAAGATAAAATGTTGCACGAAAAGATCTCGGAGCTCATTGACGAAAATATGCAGCACCGGGCTGAGTTGATAAGGAGAAACAAGGAGAATAGTGAAACAATTGAGTGGCTTTTGTCCCAGGTGCATAAGCTAACGGATGAGAACAAAATTTTGAGGATTAATCTGGGAATCCATAAGGATACTACTGATCATACAATTGCAATCGATAAGGATGCTACTGATTATACAATTACAAGGCAAAACAAGCCTCAGTTTTCAAGGTCTAAGTCCATGGGGCCATCTTTCTCTGGAAGGCTCACTGGATGCCTAGAACTTGATCTTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIP1

Protein Analysis

127

Amino Acids

14.54

Weight (kDa)

5.2

Isoelectric Point (pI)

49.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011747)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47920 AT2G47920
fragaria_vesca FvH4_4g22860
malus_domestica MD16G1128900.v1.1
prunus_persica Prupe.1G217400_v2.0.a1
pyrus_communis pycom06g01800 pycom11g08510 pycom16g10930
rosa_chinensis RchiOBHm_Chr4g0429101
rosa_laevigata RLG00000007097
rosa_multiflora Rmu_sc0000846.1_g000015 Rmu_sc0008629.1_g000028
rosa_roxburghii Rroxscaffold_5G00370730
rosa_rugosa Rorug04G0233100
rosa_samantha Rh4AG288900 Rh4BG294900 Rh4CG310400 Rh4DG291900
rosa_wichuraiana Rw4G025030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 201
AgsI TTSAA 2 cut(s) 53, 312
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 2 cut(s) 88, 184
AluI AGCT 2 cut(s) 88, 184
Alw21I GWGCWC 1 cut(s) 90
AoxI GGCC 1 cut(s) 329
ApeKI GCWGC 1 cut(s) 106
ApoI RAATTY 1 cut(s) 201
AseI ATTAAT 1 cut(s) 213
AspS9I GGNCC 1 cut(s) 329
AsuC2I CCSGG 1 cut(s) 113
BanII GRGCYC 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 118
BccI CCATC 2 cut(s) 32, 340
BcgI CGANNNNNNTGC 2 cut(s) 248, 282
BciT130I CCWGG 1 cut(s) 173
BciVI GTATCC 1 cut(s) 226
BclI TGATCA 2 cut(s) 19, 241
BcnI CCSGG 1 cut(s) 113
BfaI CTAG 1 cut(s) 362
BfuI GTATCC 1 cut(s) 226
BglII AGATCT 1 cut(s) 78
BisI GCNGC 1 cut(s) 107
BlsI GCNGC 1 cut(s) 108
Bme1390I CCNGG 2 cut(s) 113, 173
BmgT120I GGNCC 1 cut(s) 329
BmiI GGNNCC 1 cut(s) 330
BmrFI CCNGG 2 cut(s) 113, 173
BmsI GCATC 2 cut(s) 256, 347
BpuMI CCSGG 1 cut(s) 113
Bsa29I ATCGAT 1 cut(s) 258
BsaJI CCNNGG 2 cut(s) 171, 324
Bse1I ACTGG 1 cut(s) 358
BseBI CCWGG 1 cut(s) 173
BseCI ATCGAT 1 cut(s) 258
BseDI CCNNGG 2 cut(s) 171, 324
BseGI GGATG 3 cut(s) 196, 271, 362
BseMII CTCAG 2 cut(s) 108, 317
BseNI ACTGG 1 cut(s) 358
BseXI GCAGC 1 cut(s) 118
BshFI GGCC 1 cut(s) 331
BshVI ATCGAT 1 cut(s) 258
BsiHKAI GWGCWC 1 cut(s) 90
BsiSI CCGG 1 cut(s) 112
BslFI GGGAC 1 cut(s) 154
BsmFI GGGAC 1 cut(s) 154
BsnI GGCC 1 cut(s) 331
Bsp1286I GDGCHC 1 cut(s) 90
Bsp143I GATC 4 cut(s) 19, 78, 241, 370
Bsp19I CCATGG 1 cut(s) 324
BspANI GGCC 1 cut(s) 331
BspCNI CTCAG 2 cut(s) 109, 316
BspDI ATCGAT 1 cut(s) 258
BspLI GGNNCC 1 cut(s) 330
BsrI ACTGG 1 cut(s) 358
BssECI CCNNGG 2 cut(s) 171, 324
BssMI GATC 4 cut(s) 19, 78, 241, 370
BssT1I CCWWGG 1 cut(s) 324
Bst2UI CCWGG 1 cut(s) 173
Bst6I CTCTTC 1 cut(s) 3
BstDEI CTNAG 3 cut(s) 117, 303, 318
BstDSI CCRYGG 1 cut(s) 324
BstF5I GGATG 3 cut(s) 196, 271, 362
BstKTI GATC 4 cut(s) 22, 81, 244, 373
BstMBI GATC 4 cut(s) 19, 78, 241, 370
BstMWI GCNNNNNNNGC 1 cut(s) 298
BstNI CCWGG 1 cut(s) 173
BstSCI CCNGG 2 cut(s) 111, 171
BstV1I GCAGC 1 cut(s) 118
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
Bsu15I ATCGAT 1 cut(s) 258
BsuI GTATCC 1 cut(s) 226
BsuRI GGCC 1 cut(s) 331
BsuTUI ATCGAT 1 cut(s) 258
BtgI CCRYGG 1 cut(s) 324
BtsCI GGATG 3 cut(s) 196, 271, 362
BtsIMutI CAGTG 1 cut(s) 351
Cfr13I GGNCC 1 cut(s) 329
ClaI ATCGAT 1 cut(s) 258
CviAII CATG 2 cut(s) 23, 325
CviJI RGCY 7 cut(s) 88, 116, 163, 184, 301, 331, 349
CviKI_1 RGCY 7 cut(s) 88, 116, 163, 184, 301, 331, 349
DdeI CTNAG 3 cut(s) 117, 303, 318
DpnI GATC 4 cut(s) 21, 80, 243, 372
DpnII GATC 4 cut(s) 19, 78, 241, 370
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 88
Eco130I CCWWGG 1 cut(s) 324
Eco24I GRGCYC 1 cut(s) 90
Eco53kI GAGCTC 1 cut(s) 88
EcoICRI GAGCTC 1 cut(s) 88
EcoRII CCWGG 1 cut(s) 171
EcoT14I CCWWGG 1 cut(s) 324
EcoT38I GRGCYC 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 324
FaeI CATG 2 cut(s) 26, 328
FaiI YATR 7 cut(s) 24, 104, 180, 228, 246, 279, 326
FaqI GGGAC 1 cut(s) 154
FatI CATG 2 cut(s) 22, 324
FbaI TGATCA 2 cut(s) 19, 241
Fnu4HI GCNGC 1 cut(s) 107
FokI GGATG 3 cut(s) 203, 278, 369
FriOI GRGCYC 1 cut(s) 90
Fsp4HI GCNGC 1 cut(s) 107
FspBI CTAG 1 cut(s) 362
GluI GCNGC 1 cut(s) 107
HaeIII GGCC 1 cut(s) 331
HapII CCGG 1 cut(s) 112
Hin1II CATG 2 cut(s) 26, 328
HinfI GANTC 1 cut(s) 222
HpaII CCGG 1 cut(s) 112
Hpy188I TCNGA 1 cut(s) 85
Hpy188III TCNNGA 1 cut(s) 342
HpyAV CCTTC 1 cut(s) 339
HpyCH4V TGCA 4 cut(s) 70, 106, 178, 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 298
HpyF3I CTNAG 3 cut(s) 117, 303, 318
Hsp92II CATG 2 cut(s) 26, 328
Ksp22I TGATCA 2 cut(s) 19, 241
Kzo9I GATC 4 cut(s) 19, 78, 241, 370
LmnI GCTCC 1 cut(s) 85
LpnPI CCDG 6 cut(s) 125, 158, 185, 203, 327, 339
Lsp1109I GCAGC 1 cut(s) 118
LweI GCATC 2 cut(s) 256, 347
MaeI CTAG 1 cut(s) 362
MalI GATC 4 cut(s) 21, 80, 243, 372
MboI GATC 4 cut(s) 19, 78, 241, 370
MboII GAAGA 2 cut(s) 17, 20
MfeI CAATTG 2 cut(s) 153, 249
MflI RGATCY 1 cut(s) 78
MhlI GDGCHC 1 cut(s) 90
MluCI AATT 5 cut(s) 153, 201, 249, 282, 376
MnlI CCTC 2 cut(s) 201, 312
MseI TTAA 2 cut(s) 213, 375
MspI CCGG 1 cut(s) 112
MspR9I CCNGG 2 cut(s) 113, 173
MunI CAATTG 2 cut(s) 153, 249
MvaI CCWGG 1 cut(s) 173
MwoI GCNNNNNNNGC 1 cut(s) 298
NciI CCSGG 1 cut(s) 113
NcoI CCATGG 1 cut(s) 324
NdeII GATC 4 cut(s) 19, 78, 241, 370
NlaIII CATG 2 cut(s) 26, 328
NlaIV GGNNCC 1 cut(s) 330
PfeI GAWTC 1 cut(s) 222
PkrI GCNGC 1 cut(s) 108
PshBI ATTAAT 1 cut(s) 213
Psp124BI GAGCTC 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 330
PspPI GGNCC 1 cut(s) 329
PsuI RGATCY 1 cut(s) 78
SacI GAGCTC 1 cut(s) 90
SaqAI TTAA 2 cut(s) 213, 375
SatI GCNGC 1 cut(s) 107
Sau3AI GATC 4 cut(s) 19, 78, 241, 370
Sau96I GGNCC 1 cut(s) 329
ScrFI CCNGG 2 cut(s) 113, 173
SduI GDGCHC 1 cut(s) 90
SetI ASST 4 cut(s) 90, 177, 186, 317
SfaNI GCATC 2 cut(s) 256, 347
Sse9I AATT 5 cut(s) 153, 201, 249, 282, 376
SspI AATATT 1 cut(s) 16
SspMI CTAG 1 cut(s) 362
SstI GAGCTC 1 cut(s) 90
StyD4I CCNGG 2 cut(s) 111, 171
StyI CCWWGG 1 cut(s) 324
TaqI TCGA 1 cut(s) 258
TasI AATT 5 cut(s) 153, 201, 249, 282, 376
TfiI GAWTC 1 cut(s) 222
Tru1I TTAA 2 cut(s) 213, 375
Tru9I TTAA 2 cut(s) 213, 375
TscAI CASTG 1 cut(s) 358
TseI GCWGC 1 cut(s) 106
TspGWI ACGGA 1 cut(s) 203
TspRI CASTG 1 cut(s) 358
VspI ATTAAT 1 cut(s) 213
XapI RAATTY 1 cut(s) 201
XspI CTAG 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.