Rroxscaffold_5G00370730

KIP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0011747
Physical Location & Seq
Reverse (-)
52397143 .. 52397484
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00370730.1

Sequence Viewer

Length: 342 bp
ATGAGTAGTGATCACAAGGACTCCTCAGCTGGCAGTGATAAGACTATGAAGGCAGGAGGACTTGATGGCAACATGGACGAGGAATTACGCAGTATAGAGAAGGCAAAAATATGGGAGGAAAAGGTGTCAGAACTGATAGATGAAAACGCGCATGAGCAGGAGAAATTGATATCGAGGATTAAGGATAAAAGTGGGAAAATCCGGAAGCTAAAGGAAGAGAACAGAATTTTGAGAGCTCAGCTGGCAAGAGCTACTGATACGAAGAAAAAAGAACTTCCAAAGTCCAAATCCAAAGGGCCCTCTTTCATTGGAAGGCTCACAGGATGCACTCGATCTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIP1

Protein Analysis

113

Amino Acids

12.65

Weight (kDa)

9.49

Isoelectric Point (pI)

52.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011747)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47920 AT2G47920
fragaria_vesca FvH4_4g22860
malus_domestica MD16G1128900.v1.1
prunus_persica Prupe.1G217400_v2.0.a1
pyrus_communis pycom06g01800 pycom11g08510 pycom16g10930
rosa_chinensis RchiOBHm_Chr4g0429101
rosa_laevigata RLG00000007097
rosa_multiflora Rmu_sc0000846.1_g000015 Rmu_sc0008629.1_g000028
rosa_roxburghii Rroxscaffold_5G00370730
rosa_rugosa Rorug04G0233100
rosa_samantha Rh4AG288900 Rh4BG294900 Rh4CG310400 Rh4DG291900
rosa_wichuraiana Rw4G025030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 149
AccIII TCCGGA 1 cut(s) 201
AcsI RAATTY 1 cut(s) 225
AluBI AGCT 5 cut(s) 29, 208, 236, 241, 251
AluI AGCT 5 cut(s) 29, 208, 236, 241, 251
Alw21I GWGCWC 1 cut(s) 238
Aor13HI TCCGGA 1 cut(s) 201
AoxI GGCC 1 cut(s) 296
ApaI GGGCCC 1 cut(s) 300
ApoI RAATTY 1 cut(s) 225
AspLEI GCGC 1 cut(s) 151
AspS9I GGNCC 2 cut(s) 296, 297
BaeGI GKGCMC 1 cut(s) 300
BanII GRGCYC 2 cut(s) 238, 300
Bbv12I GWGCWC 1 cut(s) 238
BbvCI CCTCAGC 1 cut(s) 25
BccI CCATC 1 cut(s) 59
BclI TGATCA 1 cut(s) 10
BlpI GCTNAGC 1 cut(s) 237
BmgT120I GGNCC 2 cut(s) 296, 297
BmiI GGNNCC 1 cut(s) 298
BmsI GCATC 1 cut(s) 314
Bpu10I CCTNAGC 1 cut(s) 25
Bpu1102I GCTNAGC 1 cut(s) 237
BsaWI WCCGGW 1 cut(s) 201
BsaXI ACNNNNNCTCC 3 cut(s) 5, 35, 319
BseAI TCCGGA 1 cut(s) 201
BseGI GGATG 1 cut(s) 329
BseMII CTCAG 2 cut(s) 39, 251
BseRI GAGGAG 1 cut(s) 13
BseSI GKGCMC 1 cut(s) 300
Bsh1236I CGCG 1 cut(s) 149
BshFI GGCC 1 cut(s) 298
BsiHKAI GWGCWC 1 cut(s) 238
BsiSI CCGG 1 cut(s) 202
BsnI GGCC 1 cut(s) 298
Bsp120I GGGCCC 1 cut(s) 296
Bsp1286I GDGCHC 2 cut(s) 238, 300
Bsp13I TCCGGA 1 cut(s) 201
Bsp143I GATC 2 cut(s) 10, 332
Bsp1720I GCTNAGC 1 cut(s) 237
BspANI GGCC 1 cut(s) 298
BspCNI CTCAG 2 cut(s) 38, 250
BspEI TCCGGA 1 cut(s) 201
BspFNI CGCG 1 cut(s) 149
BspLI GGNNCC 1 cut(s) 298
BssMI GATC 2 cut(s) 10, 332
Bst6I CTCTTC 1 cut(s) 210
BstC8I GCNNGC 2 cut(s) 31, 243
BstDEI CTNAG 2 cut(s) 25, 237
BstF5I GGATG 1 cut(s) 329
BstFNI CGCG 1 cut(s) 149
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 2 cut(s) 13, 335
BstMBI GATC 2 cut(s) 10, 332
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstSLI GKGCMC 1 cut(s) 300
BstUI CGCG 1 cut(s) 149
BsuRI GGCC 1 cut(s) 298
BtsCI GGATG 1 cut(s) 329
BtsI GCAGTG 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 40
Cac8I GCNNGC 2 cut(s) 31, 243
CfoI GCGC 1 cut(s) 151
Cfr13I GGNCC 2 cut(s) 296, 297
CviAII CATG 2 cut(s) 73, 152
CviJI RGCY 7 cut(s) 29, 208, 236, 241, 251, 298, 316
CviKI_1 RGCY 7 cut(s) 29, 208, 236, 241, 251, 298, 316
DdeI CTNAG 2 cut(s) 25, 237
DpnI GATC 2 cut(s) 12, 334
DpnII GATC 2 cut(s) 10, 332
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Ecl136II GAGCTC 1 cut(s) 236
Eco24I GRGCYC 2 cut(s) 238, 300
Eco32I GATATC 1 cut(s) 171
Eco53kI GAGCTC 1 cut(s) 236
EcoICRI GAGCTC 1 cut(s) 236
EcoO109I RGGNCCY 2 cut(s) 296, 297
EcoRV GATATC 1 cut(s) 171
EcoT38I GRGCYC 2 cut(s) 238, 300
FaeI CATG 2 cut(s) 76, 155
FaiI YATR 5 cut(s) 47, 74, 95, 112, 153
FatI CATG 2 cut(s) 72, 151
FbaI TGATCA 1 cut(s) 10
FokI GGATG 1 cut(s) 336
FriOI GRGCYC 2 cut(s) 238, 300
GlaI GCGC 1 cut(s) 150
HaeIII GGCC 1 cut(s) 298
HapII CCGG 1 cut(s) 202
HhaI GCGC 1 cut(s) 151
Hin1II CATG 2 cut(s) 76, 155
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HinfI GANTC 1 cut(s) 20
HpaII CCGG 1 cut(s) 202
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 1 cut(s) 202
HpyAV CCTTC 3 cut(s) 43, 94, 306
HpyCH4V TGCA 1 cut(s) 327
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpyF3I CTNAG 2 cut(s) 25, 237
Hsp92II CATG 2 cut(s) 76, 155
HspAI GCGC 1 cut(s) 149
Kpn2I TCCGGA 1 cut(s) 201
Ksp22I TGATCA 1 cut(s) 10
Kzo9I GATC 2 cut(s) 10, 332
LpnPI CCDG 6 cut(s) 15, 39, 143, 215, 227, 306
LweI GCATC 1 cut(s) 314
MalI GATC 2 cut(s) 12, 334
MboI GATC 2 cut(s) 10, 332
MboII GAAGA 2 cut(s) 227, 274
MhlI GDGCHC 2 cut(s) 238, 300
MluCI AATT 3 cut(s) 83, 164, 225
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 6 cut(s) 34, 50, 73, 109, 168, 310
MroI TCCGGA 1 cut(s) 201
MseI TTAA 2 cut(s) 180, 340
MspA1I CMGCKG 2 cut(s) 29, 241
MspI CCGG 1 cut(s) 202
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 1 cut(s) 242
NdeII GATC 2 cut(s) 10, 332
NlaIII CATG 2 cut(s) 76, 155
NlaIV GGNNCC 1 cut(s) 298
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
Psp124BI GAGCTC 1 cut(s) 238
PspN4I GGNNCC 1 cut(s) 298
PspOMI GGGCCC 1 cut(s) 296
PspPI GGNCC 2 cut(s) 296, 297
PvuII CAGCTG 2 cut(s) 29, 241
SacI GAGCTC 1 cut(s) 238
SaqAI TTAA 2 cut(s) 180, 340
Sau3AI GATC 2 cut(s) 10, 332
Sau96I GGNCC 2 cut(s) 296, 297
SchI GAGTC 1 cut(s) 14
SduI GDGCHC 2 cut(s) 238, 300
SetI ASST 6 cut(s) 31, 126, 210, 238, 243, 253
SfaNI GCATC 1 cut(s) 314
Sse9I AATT 3 cut(s) 83, 164, 225
SstI GAGCTC 1 cut(s) 238
TaqI TCGA 2 cut(s) 173, 331
TasI AATT 3 cut(s) 83, 164, 225
Tru1I TTAA 2 cut(s) 180, 340
Tru9I TTAA 2 cut(s) 180, 340
TscAI CASTG 1 cut(s) 40
TspDTI ATGAA 3 cut(s) 62, 156, 295
TspRI CASTG 1 cut(s) 40
XapI RAATTY 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.