RchiOBHm_Chr4g0429101

KIP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0011747
Physical Location & Seq
Reverse (-)
53965315 .. 53966804
1490 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39794

Sequence Viewer

Length: 816 bp
ATGAACAAAGAAGACCAGGCTGCGGCTTTTTCATGGTGGTGGGACAGTCATAATCGTCCCCATCATTCTCAGTGGCTTCAAGCTACCCTCTCTGATTTGGATGAGAAGACTAAACTGATGCTGAATATTATTGAAGAAGATGGAGATTCATTTGCCAAGAGAGCTGAGATGTTTTTTAAAAGAAAACCTGAGCTCATAACGAGGTTGGAAGATTTCTACAAATCGTACCGTTCACTAGCTGAAAACTACGATCAGCTAAGATCTGAATTGATTCAAGCTGCTCAGCTGAGATCATTTTCTTCATTAGACTCCATCAAAGCCCAAACCATCCAAAAATGCGAGAAGGAAATCTCAGGATACTTGAAACTCAAGGCACTACCAAACAGTACCATTGAAACCGAAACAACATGCAGCTCCGATGATGCTAACTTTTATGAGTACCTGCACAAAAAGCTGGATGATAGGTTGGTGTTGATGAGTAGTGATCACAAGGACTCCTCAGCTGGCAGTGATAAGGCTATGAAGGCAGGAGGACTTGATGGCAACATGGACGAGAAATTACGCAGTATAGAAAAGGCAAAAATATGGGAGGAAAAGGTGTCAGAACTGATAGATGAAAACACGCATCAGCAGGAGAAATTGATTTCGAGTAGTAAGGATAAAAGTGAGACAATCCAGAAGCTAAAGGAAGAGAACAGAATTTTGAGAGCTCAGCTGGCAAGACCTACTGATACGAAGAAAAACGAAATTCCAAGGTCCAAATTCAAAGGGCCATCTTTCATTGGAAGGCTCACAGGATGCACTCGATCTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIP1

Protein Analysis

271

Amino Acids

31.25

Weight (kDa)

6.63

Isoelectric Point (pI)

57.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIP1 PF07765 11 - 84 2.1e-35 KIP1-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011747)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47920 AT2G47920
fragaria_vesca FvH4_4g22860
malus_domestica MD16G1128900.v1.1
prunus_persica Prupe.1G217400_v2.0.a1
pyrus_communis pycom06g01800 pycom11g08510 pycom16g10930
rosa_chinensis RchiOBHm_Chr4g0429101
rosa_laevigata RLG00000007097
rosa_multiflora Rmu_sc0000846.1_g000015 Rmu_sc0008629.1_g000028
rosa_roxburghii Rroxscaffold_5G00370730
rosa_rugosa Rorug04G0233100
rosa_samantha Rh4AG288900 Rh4BG294900 Rh4CG310400 Rh4DG291900
rosa_wichuraiana Rw4G025030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 450
AciI CCGC 1 cut(s) 23
AcsI RAATTY 3 cut(s) 699, 747, 761
AfaI GTAC 3 cut(s) 227, 388, 440
AfiI CCNNNNNNNGG 1 cut(s) 22
AgsI TTSAA 6 cut(s) 80, 134, 275, 364, 395, 766
AjnI CCWGG 1 cut(s) 15
Alw21I GWGCWC 2 cut(s) 195, 712
Alw26I GTCTC 1 cut(s) 662
AoxI GGCC 1 cut(s) 770
ApeKI GCWGC 3 cut(s) 20, 278, 411
ApoI RAATTY 3 cut(s) 699, 747, 761
Asp700I GAANNNNTTC 1 cut(s) 270
AspS9I GGNCC 2 cut(s) 756, 770
AvaII GGWCC 1 cut(s) 756
BanII GRGCYC 2 cut(s) 195, 712
BbsI GAAGAC 2 cut(s) 18, 113
Bbv12I GWGCWC 2 cut(s) 195, 712
BbvCI CCTCAGC 1 cut(s) 499
BbvI GCAGC 3 cut(s) 7, 265, 423
BccI CCATC 6 cut(s) 69, 134, 320, 335, 533, 781
BciT130I CCWGG 1 cut(s) 17
BciVI GTATCC 1 cut(s) 350
BclI TGATCA 1 cut(s) 484
BcoDI GTCTC 1 cut(s) 662
BfaI CTAG 1 cut(s) 236
BfuAI ACCTGC 1 cut(s) 450
BfuI GTATCC 1 cut(s) 350
BglII AGATCT 1 cut(s) 260
BisI GCNGC 4 cut(s) 21, 24, 279, 412
BlpI GCTNAGC 2 cut(s) 282, 711
BlsI GCNGC 4 cut(s) 22, 25, 280, 413
Bme1390I CCNGG 1 cut(s) 17
Bme18I GGWCC 1 cut(s) 756
BmgT120I GGNCC 2 cut(s) 756, 770
BmrFI CCNGG 1 cut(s) 17
BmsI GCATC 4 cut(s) 108, 412, 634, 788
BpiI GAAGAC 2 cut(s) 18, 113
Bpu10I CCTNAGC 2 cut(s) 189, 499
Bpu1102I GCTNAGC 2 cut(s) 282, 711
BpuEI CTTGAG 1 cut(s) 353
BsaJI CCNNGG 1 cut(s) 752
BsaXI ACNNNNNCTCC 3 cut(s) 479, 509, 793
Bsc4I CCNNNNNNNGG 1 cut(s) 22
BseBI CCWGG 1 cut(s) 17
BseDI CCNNGG 1 cut(s) 752
BseGI GGATG 4 cut(s) 106, 327, 463, 803
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMII CTCAG 8 cut(s) 83, 156, 180, 278, 296, 366, 513, 725
BseRI GAGGAG 1 cut(s) 487
BseXI GCAGC 3 cut(s) 7, 265, 423
BsgI GTGCAG 1 cut(s) 428
BshFI GGCC 1 cut(s) 772
BsiHKAI GWGCWC 2 cut(s) 195, 712
BslFI GGGAC 2 cut(s) 42, 56
BslI CCNNNNNNNGG 1 cut(s) 22
BsmAI GTCTC 1 cut(s) 662
BsmFI GGGAC 2 cut(s) 42, 56
BsnI GGCC 1 cut(s) 772
Bsp1286I GDGCHC 2 cut(s) 195, 712
Bsp143I GATC 5 cut(s) 250, 260, 290, 484, 806
Bsp1720I GCTNAGC 2 cut(s) 282, 711
BspACI CCGC 1 cut(s) 23
BspANI GGCC 1 cut(s) 772
BspCNI CTCAG 8 cut(s) 82, 157, 181, 279, 295, 365, 512, 724
BspMI ACCTGC 1 cut(s) 450
BssECI CCNNGG 1 cut(s) 752
BssMI GATC 5 cut(s) 250, 260, 290, 484, 806
BssT1I CCWWGG 1 cut(s) 752
Bst2UI CCWGG 1 cut(s) 17
Bst4CI ACNGT 3 cut(s) 47, 230, 386
Bst6I CTCTTC 1 cut(s) 684
BstC8I GCNNGC 2 cut(s) 505, 717
BstDEI CTNAG 9 cut(s) 69, 165, 189, 257, 282, 287, 352, 499, 711
BstF5I GGATG 4 cut(s) 106, 327, 463, 803
BstKTI GATC 5 cut(s) 253, 263, 293, 487, 809
BstMAI GTCTC 1 cut(s) 662
BstMBI GATC 5 cut(s) 250, 260, 290, 484, 806
BstMWI GCNNNNNNNGC 4 cut(s) 161, 451, 524, 716
BstNI CCWGG 1 cut(s) 17
BstNSI RCATGY 1 cut(s) 411
BstSCI CCNGG 1 cut(s) 15
BstV1I GCAGC 3 cut(s) 7, 265, 423
BstV2I GAAGAC 2 cut(s) 18, 113
BstX2I RGATCY 1 cut(s) 260
BstYI RGATCY 1 cut(s) 260
BsuI GTATCC 1 cut(s) 350
BsuRI GGCC 1 cut(s) 772
BtsCI GGATG 4 cut(s) 106, 327, 463, 803
BtsI GCAGTG 1 cut(s) 514
BtsIMutI CAGTG 2 cut(s) 77, 514
BveI ACCTGC 1 cut(s) 450
Cac8I GCNNGC 2 cut(s) 505, 717
Cfr13I GGNCC 2 cut(s) 756, 770
Csp6I GTAC 3 cut(s) 226, 387, 439
CviAII CATG 3 cut(s) 33, 408, 547
CviQI GTAC 3 cut(s) 226, 387, 439
DdeI CTNAG 9 cut(s) 69, 165, 189, 257, 282, 287, 352, 499, 711
DpnI GATC 5 cut(s) 252, 262, 292, 486, 808
DpnII GATC 5 cut(s) 250, 260, 290, 484, 806
DraI TTTAAA 1 cut(s) 178
Eam1104I CTCTTC 1 cut(s) 684
EarI CTCTTC 1 cut(s) 684
Ecl136II GAGCTC 2 cut(s) 193, 710
Eco130I CCWWGG 1 cut(s) 752
Eco24I GRGCYC 2 cut(s) 195, 712
Eco47I GGWCC 1 cut(s) 756
Eco53kI GAGCTC 2 cut(s) 193, 710
EcoICRI GAGCTC 2 cut(s) 193, 710
EcoRII CCWGG 1 cut(s) 15
EcoT14I CCWWGG 1 cut(s) 752
EcoT38I GRGCYC 2 cut(s) 195, 712
ErhI CCWWGG 1 cut(s) 752
FaeI CATG 3 cut(s) 36, 411, 550
FaiI YATR 9 cut(s) 34, 51, 197, 409, 435, 521, 548, 569, 586
FaqI GGGAC 2 cut(s) 42, 56
FatI CATG 3 cut(s) 32, 407, 546
FbaI TGATCA 1 cut(s) 484
Fnu4HI GCNGC 4 cut(s) 21, 24, 279, 412
FokI GGATG 4 cut(s) 113, 314, 470, 810
FriOI GRGCYC 2 cut(s) 195, 712
Fsp4HI GCNGC 4 cut(s) 21, 24, 279, 412
FspBI CTAG 1 cut(s) 236
GluI GCNGC 4 cut(s) 21, 24, 279, 412
HaeIII GGCC 1 cut(s) 772
Hin1II CATG 3 cut(s) 36, 411, 550
HinfI GANTC 4 cut(s) 146, 271, 308, 494
Hpy166II GTNNAC 1 cut(s) 233
Hpy188I TCNGA 4 cut(s) 94, 265, 418, 604
Hpy188III TCNNGA 2 cut(s) 354, 676
Hpy8I GTNNAC 1 cut(s) 233
HpyAV CCTTC 3 cut(s) 337, 517, 780
HpyCH4III ACNGT 3 cut(s) 47, 230, 386
HpyCH4V TGCA 3 cut(s) 411, 445, 801
HpyF10VI GCNNNNNNNGC 4 cut(s) 161, 451, 524, 716
HpyF3I CTNAG 9 cut(s) 69, 165, 189, 257, 282, 287, 352, 499, 711
Hsp92II CATG 3 cut(s) 36, 411, 550
Ksp22I TGATCA 1 cut(s) 484
Kzo9I GATC 5 cut(s) 250, 260, 290, 484, 806
LmnI GCTCC 1 cut(s) 419
Lsp1109I GCAGC 3 cut(s) 7, 265, 423
LweI GCATC 4 cut(s) 108, 412, 634, 788
MaeI CTAG 1 cut(s) 236
MalI GATC 5 cut(s) 252, 262, 292, 486, 808
MboI GATC 5 cut(s) 250, 260, 290, 484, 806
MboII GAAGA 8 cut(s) 23, 118, 146, 149, 221, 291, 701, 748
MflI RGATCY 1 cut(s) 260
MhlI GDGCHC 2 cut(s) 195, 712
MluCI AATT 6 cut(s) 266, 557, 638, 699, 747, 761
MlyI GAGTC 2 cut(s) 302, 488
MmeI TCCRAC 1 cut(s) 186
MnlI CCTC 5 cut(s) 98, 195, 508, 524, 583
MroXI GAANNNNTTC 1 cut(s) 270
MseI TTAA 2 cut(s) 177, 814
MslI CAYNNNNRTG 1 cut(s) 37
MspA1I CMGCKG 3 cut(s) 286, 503, 715
MspR9I CCNGG 1 cut(s) 17
MvaI CCWGG 1 cut(s) 17
MwoI GCNNNNNNNGC 4 cut(s) 161, 451, 524, 716
NdeII GATC 5 cut(s) 250, 260, 290, 484, 806
NlaIII CATG 3 cut(s) 36, 411, 550
NspI RCATGY 1 cut(s) 411
PdmI GAANNNNTTC 1 cut(s) 270
PfeI GAWTC 2 cut(s) 146, 271
PkrI GCNGC 4 cut(s) 22, 25, 280, 413
PleI GAGTC 2 cut(s) 302, 488
PpsI GAGTC 2 cut(s) 302, 488
Psp124BI GAGCTC 2 cut(s) 195, 712
Psp6I CCWGG 1 cut(s) 15
PspGI CCWGG 1 cut(s) 15
PspPI GGNCC 2 cut(s) 756, 770
PsuI RGATCY 1 cut(s) 260
PvuII CAGCTG 3 cut(s) 286, 503, 715
RsaI GTAC 3 cut(s) 227, 388, 440
RsaNI GTAC 3 cut(s) 226, 387, 439
RseI CAYNNNNRTG 1 cut(s) 37
SacI GAGCTC 2 cut(s) 195, 712
SaqAI TTAA 2 cut(s) 177, 814
SatI GCNGC 4 cut(s) 21, 24, 279, 412
Sau3AI GATC 5 cut(s) 250, 260, 290, 484, 806
Sau96I GGNCC 2 cut(s) 756, 770
SchI GAGTC 2 cut(s) 302, 488
ScrFI CCNGG 1 cut(s) 17
SduI GDGCHC 2 cut(s) 195, 712
SfaNI GCATC 4 cut(s) 108, 412, 634, 788
SinI GGWCC 1 cut(s) 756
SmiMI CAYNNNNRTG 1 cut(s) 37
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
Sse9I AATT 6 cut(s) 266, 557, 638, 699, 747, 761
SsiI CCGC 1 cut(s) 23
SspI AATATT 1 cut(s) 127
SspMI CTAG 1 cut(s) 236
SstI GAGCTC 2 cut(s) 195, 712
StyD4I CCNGG 1 cut(s) 15
StyI CCWWGG 1 cut(s) 752
TaaI ACNGT 3 cut(s) 47, 230, 386
TaqI TCGA 2 cut(s) 647, 805
TasI AATT 6 cut(s) 266, 557, 638, 699, 747, 761
TauI GCSGC 1 cut(s) 26
TfiI GAWTC 2 cut(s) 146, 271
Tru1I TTAA 2 cut(s) 177, 814
Tru9I TTAA 2 cut(s) 177, 814
TscAI CASTG 2 cut(s) 77, 514
TseI GCWGC 3 cut(s) 20, 278, 411
TspDTI ATGAA 7 cut(s) 17, 21, 138, 291, 536, 630, 769
TspRI CASTG 2 cut(s) 77, 514
VpaK11BI GGWCC 1 cut(s) 756
XapI RAATTY 3 cut(s) 699, 747, 761
XceI RCATGY 1 cut(s) 411
XmnI GAANNNNTTC 1 cut(s) 270
XspI CTAG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.