Prupe.1G217400_v2.0.a1

KIP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011747
Physical Location & Seq
Reverse (-)
23018464 .. 23019834
1371 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G217400.1

Sequence Viewer

Length: 675 bp
ATGGGTTCAATAGAGGCGAACAGAGAAGACCAGGCTGCCGCTTTTTCATGGTGGTGGGATAGCCATAATCATCCCCATCAATCTCAGTGGCTTGAAGCTACTCTCTCAGATTTGAACGAGAAGACTAAGCTCATGCTAAATATTATAGAAGAAGATGGAGATTCATTTGCAAAGAGGGCTGAGATGTTCTACAAAAGAAAACCTACGCTGATAAACTTGCTAGAAGACTTCTACAAGTCGCACCGTTCGCTCGCTGAGAAGTATGATCAGCTTAGGTCTGAACTAATTCAAGCCTCCCATCTGAGATCATTTTCTTCCTTACACTCCTTGAAAGTCCAAACCATCCACAAGTGTGAAAAGGAAGTCAAGGCTTTGAAGACACAGGTTGAGACAGACCAAGAATCCTATGAAGAATCCGATGGTGAGAAAATGTGGGACGAAAAGATCTCAGAACTCATAGATGAAAATATTCAGCAGCAGGCTGAGTTGATAAGGAGAAACAAGTACCAGAATGAAACAATTCAGAAGCTGAGGGATGAGAACAAAAGGTTGAAGAGTCCTCTCGCAGGGCATAAGGCCGATGATCTCAAAAGGCAAAACCAATCTCAGTTTTCAAGGTCCAAGTCCAAAGGGCCTTCTTTCCTTGGAAGGCTCACTGGATGCACTGGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIP1

Protein Analysis

225

Amino Acids

26.16

Weight (kDa)

6.47

Isoelectric Point (pI)

67.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011747)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47920 AT2G47920
fragaria_vesca FvH4_4g22860
malus_domestica MD16G1128900.v1.1
prunus_persica Prupe.1G217400_v2.0.a1
pyrus_communis pycom06g01800 pycom11g08510 pycom16g10930
rosa_chinensis RchiOBHm_Chr4g0429101
rosa_laevigata RLG00000007097
rosa_multiflora Rmu_sc0000846.1_g000015 Rmu_sc0008629.1_g000028
rosa_roxburghii Rroxscaffold_5G00370730
rosa_rugosa Rorug04G0233100
rosa_samantha Rh4AG288900 Rh4BG294900 Rh4CG310400 Rh4DG291900
rosa_wichuraiana Rw4G025030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 39
AfaI GTAC 1 cut(s) 506
AfiI CCNNNNNNNGG 1 cut(s) 566
AgsI TTSAA 8 cut(s) 9, 95, 115, 290, 331, 376, 553, 615
AjnI CCWGG 1 cut(s) 30
AleI CACNNNNGTG 1 cut(s) 351
AluBI AGCT 4 cut(s) 98, 130, 271, 529
AluI AGCT 4 cut(s) 98, 130, 271, 529
Alw26I GTCTC 1 cut(s) 383
AlwNI CAGNNNCTG 1 cut(s) 529
AoxI GGCC 2 cut(s) 576, 632
ApeKI GCWGC 2 cut(s) 35, 475
Asp700I GAANNNNTTC 3 cut(s) 285, 468, 519
AspS9I GGNCC 2 cut(s) 618, 632
AsuHPI GGTGA 1 cut(s) 434
AvaII GGWCC 1 cut(s) 618
BbsI GAAGAC 4 cut(s) 33, 128, 231, 383
BbvCI CCTCAGC 1 cut(s) 530
BbvI GCAGC 2 cut(s) 22, 487
BccI CCATC 5 cut(s) 84, 149, 306, 350, 413
BciT130I CCWGG 1 cut(s) 32
BclI TGATCA 1 cut(s) 265
BcoDI GTCTC 1 cut(s) 383
BfaI CTAG 1 cut(s) 221
BglII AGATCT 1 cut(s) 444
BisI GCNGC 3 cut(s) 36, 39, 476
BlsI GCNGC 3 cut(s) 37, 40, 477
Bme1390I CCNGG 1 cut(s) 32
Bme18I GGWCC 1 cut(s) 618
BmgT120I GGNCC 2 cut(s) 618, 632
BmrFI CCNGG 1 cut(s) 32
BmsI GCATC 1 cut(s) 650
BpiI GAAGAC 4 cut(s) 33, 128, 231, 383
Bpu10I CCTNAGC 2 cut(s) 272, 530
BsaJI CCNNGG 1 cut(s) 643
Bsc4I CCNNNNNNNGG 1 cut(s) 566
Bse1I ACTGG 2 cut(s) 661, 670
BseBI CCWGG 1 cut(s) 32
BseDI CCNNGG 1 cut(s) 643
BseGI GGATG 4 cut(s) 70, 342, 541, 665
BseLI CCNNNNNNNGG 1 cut(s) 566
BseMII CTCAG 9 cut(s) 98, 120, 171, 246, 293, 462, 474, 521, 620
BseNI ACTGG 2 cut(s) 661, 670
BseXI GCAGC 2 cut(s) 22, 487
BshFI GGCC 2 cut(s) 578, 634
BslFI GGGAC 1 cut(s) 449
BslI CCNNNNNNNGG 1 cut(s) 566
BsmAI GTCTC 1 cut(s) 383
BsmFI GGGAC 1 cut(s) 449
BsnI GGCC 2 cut(s) 578, 634
Bsp143I GATC 4 cut(s) 265, 305, 444, 583
BspACI CCGC 1 cut(s) 39
BspANI GGCC 2 cut(s) 578, 634
BspCNI CTCAG 9 cut(s) 97, 119, 172, 247, 294, 461, 475, 522, 619
BsrI ACTGG 2 cut(s) 661, 670
BssECI CCNNGG 1 cut(s) 643
BssMI GATC 4 cut(s) 265, 305, 444, 583
BssT1I CCWWGG 1 cut(s) 643
Bst2UI CCWGG 1 cut(s) 32
Bst4CI ACNGT 1 cut(s) 245
Bst6I CTCTTC 1 cut(s) 548
BstC8I GCNNGC 2 cut(s) 252, 480
BstENI CCTNNNNNAGG 1 cut(s) 564
BstF5I GGATG 4 cut(s) 70, 342, 541, 665
BstKTI GATC 4 cut(s) 268, 308, 447, 586
BstMAI GTCTC 1 cut(s) 383
BstMBI GATC 4 cut(s) 265, 305, 444, 583
BstMWI GCNNNNNNNGC 2 cut(s) 176, 247
BstNI CCWGG 1 cut(s) 32
BstSCI CCNGG 1 cut(s) 30
BstV1I GCAGC 2 cut(s) 22, 487
BstV2I GAAGAC 4 cut(s) 33, 128, 231, 383
BstX2I RGATCY 1 cut(s) 444
BstYI RGATCY 1 cut(s) 444
BsuRI GGCC 2 cut(s) 578, 634
BtsCI GGATG 4 cut(s) 70, 342, 541, 665
BtsIMutI CAGTG 3 cut(s) 92, 654, 663
Cac8I GCNNGC 2 cut(s) 252, 480
CaiI CAGNNNCTG 1 cut(s) 529
Cfr13I GGNCC 2 cut(s) 618, 632
Csp6I GTAC 1 cut(s) 505
CspCI CAANNNNNGTGG 2 cut(s) 68, 103
CviAII CATG 2 cut(s) 48, 133
CviQI GTAC 1 cut(s) 505
DpnI GATC 4 cut(s) 267, 307, 446, 585
DpnII GATC 4 cut(s) 265, 305, 444, 583
Eam1104I CTCTTC 1 cut(s) 548
EarI CTCTTC 1 cut(s) 548
Eco130I CCWWGG 1 cut(s) 643
Eco47I GGWCC 1 cut(s) 618
EcoNI CCTNNNNNAGG 1 cut(s) 564
EcoO109I RGGNCCY 1 cut(s) 632
EcoRII CCWGG 1 cut(s) 30
EcoT14I CCWWGG 1 cut(s) 643
ErhI CCWWGG 1 cut(s) 643
FaeI CATG 2 cut(s) 51, 136
FaiI YATR 8 cut(s) 49, 66, 134, 146, 264, 408, 458, 573
FaqI GGGAC 1 cut(s) 449
FatI CATG 2 cut(s) 47, 132
FbaI TGATCA 1 cut(s) 265
Fnu4HI GCNGC 3 cut(s) 36, 39, 476
FokI GGATG 3 cut(s) 57, 329, 548
Fsp4HI GCNGC 3 cut(s) 36, 39, 476
FspBI CTAG 1 cut(s) 221
GluI GCNGC 3 cut(s) 36, 39, 476
HaeIII GGCC 2 cut(s) 578, 634
Hin1II CATG 2 cut(s) 51, 136
HinfI GANTC 4 cut(s) 161, 401, 413, 556
HphI GGTGA 1 cut(s) 434
Hpy188I TCNGA 6 cut(s) 109, 280, 303, 418, 451, 525
Hpy188III TCNNGA 1 cut(s) 672
HpyAV CCTTC 2 cut(s) 642, 645
HpyCH4III ACNGT 1 cut(s) 245
HpyCH4V TGCA 2 cut(s) 170, 663
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 247
Hsp92II CATG 2 cut(s) 51, 136
Ksp22I TGATCA 1 cut(s) 265
Kzo9I GATC 4 cut(s) 265, 305, 444, 583
LpnPI CCDG 8 cut(s) 17, 44, 368, 464, 521, 552, 642, 651
Lsp1109I GCAGC 2 cut(s) 22, 487
LweI GCATC 1 cut(s) 650
MaeI CTAG 1 cut(s) 221
MalI GATC 4 cut(s) 267, 307, 446, 585
MboI GATC 4 cut(s) 265, 305, 444, 583
MboII GAAGA 9 cut(s) 38, 133, 161, 164, 236, 306, 388, 422, 565
MflI RGATCY 1 cut(s) 444
MluCI AATT 2 cut(s) 285, 519
MlyI GAGTC 1 cut(s) 565
MnlI CCTC 5 cut(s) 7, 168, 304, 525, 570
MroXI GAANNNNTTC 3 cut(s) 285, 468, 519
MslI CAYNNNNRTG 2 cut(s) 52, 351
MspR9I CCNGG 1 cut(s) 32
MvaI CCWGG 1 cut(s) 32
MwoI GCNNNNNNNGC 2 cut(s) 176, 247
NdeII GATC 4 cut(s) 265, 305, 444, 583
NlaIII CATG 2 cut(s) 51, 136
OliI CACNNNNGTG 1 cut(s) 351
PdmI GAANNNNTTC 3 cut(s) 285, 468, 519
PfeI GAWTC 3 cut(s) 161, 401, 413
PkrI GCNGC 3 cut(s) 37, 40, 477
PleI GAGTC 1 cut(s) 564
PpsI GAGTC 1 cut(s) 564
Psp6I CCWGG 1 cut(s) 30
PspGI CCWGG 1 cut(s) 30
PspPI GGNCC 2 cut(s) 618, 632
PstNI CAGNNNCTG 1 cut(s) 529
PsuI RGATCY 1 cut(s) 444
RsaI GTAC 1 cut(s) 506
RsaNI GTAC 1 cut(s) 505
RseI CAYNNNNRTG 2 cut(s) 52, 351
SatI GCNGC 3 cut(s) 36, 39, 476
Sau3AI GATC 4 cut(s) 265, 305, 444, 583
Sau96I GGNCC 2 cut(s) 618, 632
SchI GAGTC 1 cut(s) 565
ScrFI CCNGG 1 cut(s) 32
SetI ASST 9 cut(s) 100, 132, 205, 273, 278, 387, 531, 551, 620
SfaNI GCATC 1 cut(s) 650
SinI GGWCC 1 cut(s) 618
SmiMI CAYNNNNRTG 2 cut(s) 52, 351
Sse9I AATT 2 cut(s) 285, 519
SsiI CCGC 1 cut(s) 39
SspI AATATT 2 cut(s) 142, 469
SspMI CTAG 1 cut(s) 221
StyD4I CCNGG 1 cut(s) 30
StyI CCWWGG 1 cut(s) 643
TaaI ACNGT 1 cut(s) 245
TasI AATT 2 cut(s) 285, 519
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 3 cut(s) 161, 401, 413
TscAI CASTG 3 cut(s) 92, 661, 670
TseI GCWGC 2 cut(s) 35, 475
TspDTI ATGAA 5 cut(s) 36, 153, 423, 477, 528
TspRI CASTG 3 cut(s) 92, 661, 670
VpaK11BI GGWCC 1 cut(s) 618
XagI CCTNNNNNAGG 1 cut(s) 564
XmnI GAANNNNTTC 3 cut(s) 285, 468, 519
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.