FvH4_4g22860

KIP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0011747
Physical Location & Seq
Reverse (-)
25517809 .. 25519442
1634 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g22860.t1

Sequence Viewer

Length: 849 bp
ATGGCGAACTCAAAAGAGACATCGACGTCCATGGACAAAGAAGACCACGCTGTGGCTTTTACTTGGTGGAGGGACAGTCATAATCGTCCTCATCATTCTCAGTGGCTTCAAGCTACCCTCTCCGATTTGGATGAGAAGACTCAACTGATGCTGGATATTATTCAAGAAGATGGAGATTCATTTGCAAGGAGAGCTGAGATGTTTTTCAAAAAAAAACCTGAGCTGATAACCAGGTTGGAAGATTTGTACAAATCGTACCGTTCTCTAGCTGAGAACTACGATCAGCTAAGATCTGAACTGATTCAAGCTGCTCAGCTGAGATCCTTGTCTTCATTAGACTGCATCAAAGTGCAAACCATCCAAAAATGCGAGAAGGAAATCTCGGGATACTTGAAACTCAAGGCAATACCAAACAGTACCATTGAAACTGAAACCACATGCAGCTCTGATGATGCTAACTTTCATGAGTACCTGCCTAGAAGGCTGGATGATAGGTTGGTGTTGATGAGTAATGAGCGGAAGGACTCCTCAGCTAGCAGTGATAAGGCTATGGAGGCCAGAGGACTGAATGGCAACATGGACGAGACATTACGCAGTTTAGAGAAGGCGAAAATTTTGGAGGAAAGGGTGTCAGAACTGATTGATGAAAACACGCATCAGCAGGAGACACTGATATCGAATATTAAGGATAAGAGTGATACAATCAAGAAGCTAAAGGAAGAGAACAGGATTTTGAGAGCTCAGATGGCAAGAGCAATCGATACGAAGAAAACCGAACTTCCAAGGTCCAAGTCCAAATTAGGGCCTTTTTTCATTGGAAGGCTTACAGGATGCACTCGATCTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIP1

Protein Analysis

283

Amino Acids

32.51

Weight (kDa)

6.36

Isoelectric Point (pI)

46.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIP1 PF07765 22 - 94 5.8e-32 KIP1-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011747)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47920 AT2G47920
fragaria_vesca FvH4_4g22860
malus_domestica MD16G1128900.v1.1
prunus_persica Prupe.1G217400_v2.0.a1
pyrus_communis pycom06g01800 pycom11g08510 pycom16g10930
rosa_chinensis RchiOBHm_Chr4g0429101
rosa_laevigata RLG00000007097
rosa_multiflora Rmu_sc0000846.1_g000015 Rmu_sc0008629.1_g000028
rosa_roxburghii Rroxscaffold_5G00370730
rosa_rugosa Rorug04G0233100
rosa_samantha Rh4AG288900 Rh4BG294900 Rh4CG310400 Rh4DG291900
rosa_wichuraiana Rw4G025030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 25
AatII GACGTC 1 cut(s) 29
Acc36I ACCTGC 1 cut(s) 480
AccB7I CCANNNNNTGG 1 cut(s) 52
AccBSI CCGCTC 1 cut(s) 517
AciI CCGC 1 cut(s) 517
AclWI GGATC 1 cut(s) 315
AcsI RAATTY 1 cut(s) 612
AcyI GRCGYC 1 cut(s) 26
AdeI CACNNNGTG 1 cut(s) 52
AfaI GTAC 4 cut(s) 248, 257, 418, 470
AfiI CCNNNNNNNGG 2 cut(s) 52, 801
AgsI TTSAA 6 cut(s) 110, 164, 208, 305, 394, 425
AjnI CCWGG 1 cut(s) 230
Alw21I GWGCWC 1 cut(s) 742
Alw26I GTCTC 3 cut(s) 11, 578, 659
AlwI GGATC 1 cut(s) 315
Ama87I CYCGRG 1 cut(s) 382
AoxI GGCC 2 cut(s) 555, 803
ApeKI GCWGC 2 cut(s) 308, 441
ApoI RAATTY 1 cut(s) 612
Asp700I GAANNNNTTC 1 cut(s) 300
AspS9I GGNCC 2 cut(s) 786, 803
AsuNHI GCTAGC 1 cut(s) 533
AvaI CYCGRG 1 cut(s) 382
AvaII GGWCC 1 cut(s) 786
BanII GRGCYC 1 cut(s) 742
BbsI GAAGAC 3 cut(s) 48, 143, 321
Bbv12I GWGCWC 1 cut(s) 742
BbvCI CCTCAGC 1 cut(s) 529
BbvI GCAGC 2 cut(s) 295, 453
BccI CCATC 3 cut(s) 164, 365, 739
BciT130I CCWGG 1 cut(s) 232
BciVI GTATCC 1 cut(s) 380
BcoDI GTCTC 3 cut(s) 11, 578, 659
BfaI CTAG 3 cut(s) 266, 477, 534
BfuAI ACCTGC 1 cut(s) 480
BfuI GTATCC 1 cut(s) 380
BglI GCCNNNNNGGC 1 cut(s) 481
BglII AGATCT 1 cut(s) 290
BisI GCNGC 2 cut(s) 309, 442
BlpI GCTNAGC 1 cut(s) 312
BlsI GCNGC 2 cut(s) 310, 443
Bme1390I CCNGG 1 cut(s) 232
Bme18I GGWCC 1 cut(s) 786
BmeT110I CYCGRG 1 cut(s) 382
BmgT120I GGNCC 2 cut(s) 786, 803
BmrFI CCNGG 1 cut(s) 232
BmsI GCATC 5 cut(s) 138, 351, 442, 664, 821
BmtI GCTAGC 1 cut(s) 537
BpiI GAAGAC 3 cut(s) 48, 143, 321
Bpu10I CCTNAGC 2 cut(s) 219, 529
Bpu1102I GCTNAGC 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 383
Bsa29I ATCGAT 1 cut(s) 759
BsaHI GRCGYC 1 cut(s) 26
BsaJI CCNNGG 2 cut(s) 30, 782
BsaXI ACNNNNNCTCC 3 cut(s) 61, 91, 826
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 801
BseBI CCWGG 1 cut(s) 232
BseCI ATCGAT 1 cut(s) 759
BseDI CCNNGG 2 cut(s) 30, 782
BseGI GGATG 4 cut(s) 136, 357, 493, 836
BseLI CCNNNNNNNGG 2 cut(s) 52, 801
BseMII CTCAG 8 cut(s) 113, 186, 210, 261, 308, 326, 543, 755
BseRI GAGGAG 1 cut(s) 517
BseXI GCAGC 2 cut(s) 295, 453
BshFI GGCC 2 cut(s) 557, 805
BshVI ATCGAT 1 cut(s) 759
BsiHKAI GWGCWC 1 cut(s) 742
BsiHKCI CYCGRG 1 cut(s) 382
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 2 cut(s) 52, 801
BsmAI GTCTC 3 cut(s) 11, 578, 659
BsmFI GGGAC 1 cut(s) 86
BsnI GGCC 2 cut(s) 557, 805
BsoBI CYCGRG 1 cut(s) 382
Bsp1286I GDGCHC 1 cut(s) 742
Bsp1407I TGTACA 1 cut(s) 246
Bsp143I GATC 4 cut(s) 280, 290, 320, 839
Bsp1720I GCTNAGC 1 cut(s) 312
Bsp19I CCATGG 1 cut(s) 30
BspACI CCGC 1 cut(s) 517
BspANI GGCC 2 cut(s) 557, 805
BspCNI CTCAG 8 cut(s) 112, 187, 211, 262, 309, 325, 542, 754
BspDI ATCGAT 1 cut(s) 759
BspHI TCATGA 1 cut(s) 463
BspMI ACCTGC 1 cut(s) 480
BspOI GCTAGC 1 cut(s) 537
BspPI GGATC 1 cut(s) 315
BsrBI CCGCTC 1 cut(s) 517
BsrGI TGTACA 1 cut(s) 246
BssECI CCNNGG 2 cut(s) 30, 782
BssMI GATC 4 cut(s) 280, 290, 320, 839
BssNI GRCGYC 1 cut(s) 26
BssT1I CCWWGG 2 cut(s) 30, 782
Bst2UI CCWGG 1 cut(s) 232
Bst4CI ACNGT 3 cut(s) 77, 260, 416
Bst6I CTCTTC 1 cut(s) 714
BstACI GRCGYC 1 cut(s) 26
BstAUI TGTACA 1 cut(s) 246
BstC8I GCNNGC 1 cut(s) 535
BstDEI CTNAG 9 cut(s) 99, 195, 219, 270, 287, 312, 317, 529, 741
BstDSI CCRYGG 1 cut(s) 30
BstF5I GGATG 4 cut(s) 136, 357, 493, 836
BstKTI GATC 4 cut(s) 283, 293, 323, 842
BstMAI GTCTC 3 cut(s) 11, 578, 659
BstMBI GATC 4 cut(s) 280, 290, 320, 839
BstMWI GCNNNNNNNGC 4 cut(s) 191, 481, 554, 746
BstNI CCWGG 1 cut(s) 232
BstNSI RCATGY 1 cut(s) 441
BstSCI CCNGG 1 cut(s) 230
BstV1I GCAGC 2 cut(s) 295, 453
BstV2I GAAGAC 3 cut(s) 48, 143, 321
BstX2I RGATCY 2 cut(s) 290, 320
BstYI RGATCY 2 cut(s) 290, 320
Bsu15I ATCGAT 1 cut(s) 759
BsuI GTATCC 1 cut(s) 380
BsuRI GGCC 2 cut(s) 557, 805
BsuTUI ATCGAT 1 cut(s) 759
BtgI CCRYGG 1 cut(s) 30
BtsCI GGATG 4 cut(s) 136, 357, 493, 836
BtsI GCAGTG 1 cut(s) 544
BtsIMutI CAGTG 3 cut(s) 107, 544, 668
BveI ACCTGC 1 cut(s) 480
Cac8I GCNNGC 1 cut(s) 535
CciI TCATGA 1 cut(s) 463
Cfr13I GGNCC 2 cut(s) 786, 803
ClaI ATCGAT 1 cut(s) 759
CsiI ACCWGGT 1 cut(s) 230
Csp6I GTAC 4 cut(s) 247, 256, 417, 469
CviAII CATG 4 cut(s) 31, 438, 464, 577
CviQI GTAC 4 cut(s) 247, 256, 417, 469
DdeI CTNAG 9 cut(s) 99, 195, 219, 270, 287, 312, 317, 529, 741
DpnI GATC 4 cut(s) 282, 292, 322, 841
DpnII GATC 4 cut(s) 280, 290, 320, 839
DraIII CACNNNGTG 1 cut(s) 52
DrdI GACNNNNNNGTC 1 cut(s) 25
DseDI GACNNNNNNGTC 1 cut(s) 25
Eam1104I CTCTTC 1 cut(s) 714
EarI CTCTTC 1 cut(s) 714
Ecl136II GAGCTC 1 cut(s) 740
Eco130I CCWWGG 2 cut(s) 30, 782
Eco24I GRGCYC 1 cut(s) 742
Eco32I GATATC 1 cut(s) 675
Eco47I GGWCC 1 cut(s) 786
Eco53kI GAGCTC 1 cut(s) 740
Eco88I CYCGRG 1 cut(s) 382
EcoICRI GAGCTC 1 cut(s) 740
EcoO109I RGGNCCY 1 cut(s) 803
EcoRII CCWGG 1 cut(s) 230
EcoRV GATATC 1 cut(s) 675
EcoT14I CCWWGG 2 cut(s) 30, 782
EcoT38I GRGCYC 1 cut(s) 742
ErhI CCWWGG 2 cut(s) 30, 782
FaeI CATG 4 cut(s) 34, 441, 467, 580
FaiI YATR 6 cut(s) 32, 81, 439, 465, 551, 578
FaqI GGGAC 1 cut(s) 86
FatI CATG 4 cut(s) 30, 437, 463, 576
Fnu4HI GCNGC 2 cut(s) 309, 442
FokI GGATG 4 cut(s) 143, 344, 500, 843
FriOI GRGCYC 1 cut(s) 742
Fsp4HI GCNGC 2 cut(s) 309, 442
FspBI CTAG 3 cut(s) 266, 477, 534
GluI GCNGC 2 cut(s) 309, 442
HaeIII GGCC 2 cut(s) 557, 805
Hin1I GRCGYC 1 cut(s) 26
Hin1II CATG 4 cut(s) 34, 441, 467, 580
HinfI GANTC 4 cut(s) 139, 176, 301, 524
Hpy188I TCNGA 5 cut(s) 124, 295, 448, 634, 744
Hpy188III TCNNGA 4 cut(s) 164, 384, 464, 706
Hpy99I CGWCG 1 cut(s) 28
HpyAV CCTTC 5 cut(s) 367, 474, 514, 598, 813
HpyCH4III ACNGT 3 cut(s) 77, 260, 416
HpyCH4IV ACGT 1 cut(s) 26
HpyCH4V TGCA 5 cut(s) 185, 342, 352, 441, 834
HpyF10VI GCNNNNNNNGC 4 cut(s) 191, 481, 554, 746
HpyF3I CTNAG 9 cut(s) 99, 195, 219, 270, 287, 312, 317, 529, 741
HpySE526I ACGT 1 cut(s) 26
Hsp92I GRCGYC 1 cut(s) 26
Hsp92II CATG 4 cut(s) 34, 441, 467, 580
Kzo9I GATC 4 cut(s) 280, 290, 320, 839
Lsp1109I GCAGC 2 cut(s) 295, 453
LweI GCATC 5 cut(s) 138, 351, 442, 664, 821
MabI ACCWGGT 1 cut(s) 230
MaeI CTAG 3 cut(s) 266, 477, 534
MaeII ACGT 1 cut(s) 26
MalI GATC 4 cut(s) 282, 292, 322, 841
MbiI CCGCTC 1 cut(s) 517
MboI GATC 4 cut(s) 280, 290, 320, 839
MboII GAAGA 7 cut(s) 53, 148, 179, 251, 321, 731, 778
MflI RGATCY 2 cut(s) 290, 320
MhlI GDGCHC 1 cut(s) 742
MluCI AATT 2 cut(s) 612, 797
MlyI GAGTC 2 cut(s) 133, 518
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 7 cut(s) 63, 99, 128, 538, 547, 554, 613
MroXI GAANNNNTTC 1 cut(s) 300
MseI TTAA 2 cut(s) 684, 847
MslI CAYNNNNRTG 1 cut(s) 347
MspA1I CMGCKG 1 cut(s) 316
MspR9I CCNGG 1 cut(s) 232
MvaI CCWGG 1 cut(s) 232
MwoI GCNNNNNNNGC 4 cut(s) 191, 481, 554, 746
NcoI CCATGG 1 cut(s) 30
NdeII GATC 4 cut(s) 280, 290, 320, 839
NheI GCTAGC 1 cut(s) 533
NlaIII CATG 4 cut(s) 34, 441, 467, 580
NspI RCATGY 1 cut(s) 441
PagI TCATGA 1 cut(s) 463
PdmI GAANNNNTTC 1 cut(s) 300
PfeI GAWTC 2 cut(s) 176, 301
PflMI CCANNNNNTGG 1 cut(s) 52
PkrI GCNGC 2 cut(s) 310, 443
PleI GAGTC 2 cut(s) 133, 518
PpsI GAGTC 2 cut(s) 133, 518
Psp124BI GAGCTC 1 cut(s) 742
Psp6I CCWGG 1 cut(s) 230
PspGI CCWGG 1 cut(s) 230
PspPI GGNCC 2 cut(s) 786, 803
PsuI RGATCY 2 cut(s) 290, 320
PvuII CAGCTG 1 cut(s) 316
RsaI GTAC 4 cut(s) 248, 257, 418, 470
RsaNI GTAC 4 cut(s) 247, 256, 417, 469
RseI CAYNNNNRTG 1 cut(s) 347
SacI GAGCTC 1 cut(s) 742
SaqAI TTAA 2 cut(s) 684, 847
SatI GCNGC 2 cut(s) 309, 442
Sau3AI GATC 4 cut(s) 280, 290, 320, 839
Sau96I GGNCC 2 cut(s) 786, 803
SchI GAGTC 2 cut(s) 133, 518
ScrFI CCNGG 1 cut(s) 232
SduI GDGCHC 1 cut(s) 742
SexAI ACCWGGT 1 cut(s) 230
SfaNI GCATC 5 cut(s) 138, 351, 442, 664, 821
SinI GGWCC 1 cut(s) 786
SmiMI CAYNNNNRTG 1 cut(s) 347
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
Sse9I AATT 2 cut(s) 612, 797
SsiI CCGC 1 cut(s) 517
SspI AATATT 1 cut(s) 682
SspMI CTAG 3 cut(s) 266, 477, 534
SstI GAGCTC 1 cut(s) 742
StyD4I CCNGG 1 cut(s) 230
StyI CCWWGG 2 cut(s) 30, 782
TaaI ACNGT 3 cut(s) 77, 260, 416
TaiI ACGT 1 cut(s) 29
TaqI TCGA 4 cut(s) 23, 677, 759, 838
TasI AATT 2 cut(s) 612, 797
TatI WGTACW 1 cut(s) 246
TfiI GAWTC 2 cut(s) 176, 301
Tru1I TTAA 2 cut(s) 684, 847
Tru9I TTAA 2 cut(s) 684, 847
TscAI CASTG 3 cut(s) 107, 544, 675
TseI GCWGC 2 cut(s) 308, 441
TspDTI ATGAA 5 cut(s) 168, 321, 452, 660, 802
TspRI CASTG 3 cut(s) 107, 544, 675
Van91I CCANNNNNTGG 1 cut(s) 52
VpaK11BI GGWCC 1 cut(s) 786
XapI RAATTY 1 cut(s) 612
XceI RCATGY 1 cut(s) 441
XmnI GAANNNNTTC 1 cut(s) 300
XspI CTAG 3 cut(s) 266, 477, 534
ZraI GACGTC 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.