pycom16g10930

KIP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0011747
Physical Location & Seq
Forward (+)
7570849 .. 7573368
2520 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g10930.1

Sequence Viewer

Length: 786 bp
ATGGGTTCGATTTCAGGAGAGATGGTGAAGAGGCAGGAAGACCAGGCTGCCTCCTTTTCATGGTGGTGGGACAGCCATAATTGTCCCAATCAATCTCAGTGGCTTGAAGCTACTCTCTCAGAGTTGAACGAAAAGACCAATCTCATGCTAAATATAATTGAAGTAGATGGAGATTCATTTGCAAAGAGGGTTGAGATGTTCTTCAAAAGGAAACCTAAGCTCATAAACTTGTTCGAAGACTTCTACAAGTCGTACCGATCGCTCGCCGAGAAGTATGATCAGCTTCGATCCGAGCTGATTCAAGCCTCTCATCTGAGATCATTTTCTTCTTTAGACTCCCTAAAAGTCCAAACTATGCAGAAGTGTGAGAAGGAAATCTCAAGTTACTTGAAGGACAAGTCTCTGAAGACACAGGTTGAGACAGACCAAAAATCCTACGAAGAATATATGGAAAAAGAGAACATTGATCATGGCGTAGAATCTGATATTAATGTGGATGAAAAAGTGAAAATGTGGGACGAAAAGATCTCAGAACTCATTGACGGAAATATGCAGCAGCAGGCTGAGTTGATAAGGAGAAACAAGGAGAAAAGTGAAATGATTGAAAGGCTTTTGTCTCAGGTGCATAGGCTAACAGATGAGAACAAAATTTTGTGGAATCGTCTGATATGCCATGAGGATACTACTGATCATATAATTACAAGCCAAAACAAGCCTCAATTTTCAAGGTCCAAGTCCAAAGGGCCATCTTTCTTTGGAAGGCTCACTGGATGCACTGGTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIP1

Protein Analysis

262

Amino Acids

30.66

Weight (kDa)

5.66

Isoelectric Point (pI)

55.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIP1 PF07765 20 - 93 5.2e-34 KIP1-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011747)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47920 AT2G47920
fragaria_vesca FvH4_4g22860
malus_domestica MD16G1128900.v1.1
prunus_persica Prupe.1G217400_v2.0.a1
pyrus_communis pycom06g01800 pycom11g08510 pycom16g10930
rosa_chinensis RchiOBHm_Chr4g0429101
rosa_laevigata RLG00000007097
rosa_multiflora Rmu_sc0000846.1_g000015 Rmu_sc0008629.1_g000028
rosa_roxburghii Rroxscaffold_5G00370730
rosa_rugosa Rorug04G0233100
rosa_samantha Rh4AG288900 Rh4BG294900 Rh4CG310400 Rh4DG291900
rosa_wichuraiana Rw4G025030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 282
AcsI RAATTY 1 cut(s) 648
AcuI CTGAAG 1 cut(s) 425
AfaI GTAC 2 cut(s) 254, 781
AfiI CCNNNNNNNGG 1 cut(s) 60
AgsI TTSAA 8 cut(s) 107, 127, 161, 205, 302, 391, 605, 726
AjnI CCWGG 1 cut(s) 42
AluBI AGCT 4 cut(s) 110, 220, 283, 295
AluI AGCT 4 cut(s) 110, 220, 283, 295
Alw26I GTCTC 3 cut(s) 405, 413, 621
AlwI GGATC 1 cut(s) 282
AoxI GGCC 1 cut(s) 743
ApeKI GCWGC 3 cut(s) 47, 553, 556
ApoI RAATTY 1 cut(s) 648
AseI ATTAAT 1 cut(s) 489
AspS9I GGNCC 2 cut(s) 729, 743
AsuHPI GGTGA 1 cut(s) 37
AsuII TTCGAA 1 cut(s) 234
AvaII GGWCC 1 cut(s) 729
BbsI GAAGAC 3 cut(s) 45, 243, 413
BbvI GCAGC 3 cut(s) 34, 565, 568
BccI CCATC 3 cut(s) 16, 161, 754
BciT130I CCWGG 1 cut(s) 44
BciVI GTATCC 1 cut(s) 673
BclI TGATCA 3 cut(s) 277, 466, 688
BcoDI GTCTC 3 cut(s) 405, 413, 621
BfuI GTATCC 1 cut(s) 673
BglII AGATCT 1 cut(s) 525
BisI GCNGC 3 cut(s) 48, 554, 557
BlsI GCNGC 3 cut(s) 49, 555, 558
Bme1390I CCNGG 1 cut(s) 44
Bme18I GGWCC 1 cut(s) 729
BmgT120I GGNCC 2 cut(s) 729, 743
BmrFI CCNGG 1 cut(s) 44
BmsI GCATC 1 cut(s) 761
BpiI GAAGAC 3 cut(s) 45, 243, 413
Bpu10I CCTNAGC 1 cut(s) 216
Bpu14I TTCGAA 1 cut(s) 234
BpuEI CTTGAG 1 cut(s) 364
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
Bsc4I CCNNNNNNNGG 1 cut(s) 60
Bse1I ACTGG 2 cut(s) 772, 781
BseBI CCWGG 1 cut(s) 44
BseGI GGATG 2 cut(s) 502, 776
BseLI CCNNNNNNNGG 1 cut(s) 60
BseMII CTCAG 6 cut(s) 110, 132, 305, 543, 555, 632
BseNI ACTGG 2 cut(s) 772, 781
BseXI GCAGC 3 cut(s) 34, 565, 568
Bsh1285I CGRYCG 1 cut(s) 260
BshFI GGCC 1 cut(s) 745
BsiEI CGRYCG 1 cut(s) 260
BslFI GGGAC 3 cut(s) 69, 83, 530
BslI CCNNNNNNNGG 1 cut(s) 60
BsmAI GTCTC 3 cut(s) 405, 413, 621
BsmFI GGGAC 3 cut(s) 69, 83, 530
BsnI GGCC 1 cut(s) 745
Bsp119I TTCGAA 1 cut(s) 234
Bsp143I GATC 7 cut(s) 257, 277, 287, 317, 466, 525, 688
BspANI GGCC 1 cut(s) 745
BspCNI CTCAG 6 cut(s) 109, 131, 306, 542, 556, 631
BspPI GGATC 1 cut(s) 282
BspT104I TTCGAA 1 cut(s) 234
BsrI ACTGG 2 cut(s) 772, 781
BssMI GATC 7 cut(s) 257, 277, 287, 317, 466, 525, 688
Bst2UI CCWGG 1 cut(s) 44
Bst6I CTCTTC 1 cut(s) 23
BstBI TTCGAA 1 cut(s) 234
BstC8I GCNNGC 2 cut(s) 264, 561
BstDEI CTNAG 7 cut(s) 96, 118, 216, 314, 529, 564, 618
BstF5I GGATG 2 cut(s) 502, 776
BstKTI GATC 7 cut(s) 260, 280, 290, 320, 469, 528, 691
BstMAI GTCTC 3 cut(s) 405, 413, 621
BstMBI GATC 7 cut(s) 257, 277, 287, 317, 466, 525, 688
BstMCI CGRYCG 1 cut(s) 260
BstNI CCWGG 1 cut(s) 44
BstSCI CCNGG 1 cut(s) 42
BstV1I GCAGC 3 cut(s) 34, 565, 568
BstV2I GAAGAC 3 cut(s) 45, 243, 413
BstX2I RGATCY 1 cut(s) 525
BstYI RGATCY 1 cut(s) 525
BsuI GTATCC 1 cut(s) 673
BsuRI GGCC 1 cut(s) 745
BtsCI GGATG 2 cut(s) 502, 776
BtsIMutI CAGTG 3 cut(s) 104, 765, 774
Cac8I GCNNGC 2 cut(s) 264, 561
Cfr13I GGNCC 2 cut(s) 729, 743
Csp6I GTAC 2 cut(s) 253, 780
CspCI CAANNNNNGTGG 2 cut(s) 80, 115
CviAII CATG 4 cut(s) 60, 145, 470, 674
CviQI GTAC 2 cut(s) 253, 780
DdeI CTNAG 7 cut(s) 96, 118, 216, 314, 529, 564, 618
DpnI GATC 7 cut(s) 259, 279, 289, 319, 468, 527, 690
DpnII GATC 7 cut(s) 257, 277, 287, 317, 466, 525, 688
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
Eco47I GGWCC 1 cut(s) 729
Eco57I CTGAAG 1 cut(s) 425
EcoRII CCWGG 1 cut(s) 42
FaeI CATG 4 cut(s) 63, 148, 473, 677
FaqI GGGAC 3 cut(s) 69, 83, 530
FatI CATG 4 cut(s) 59, 144, 469, 673
FbaI TGATCA 3 cut(s) 277, 466, 688
Fnu4HI GCNGC 3 cut(s) 48, 554, 557
FokI GGATG 1 cut(s) 509
Fsp4HI GCNGC 3 cut(s) 48, 554, 557
GluI GCNGC 3 cut(s) 48, 554, 557
HaeIII GGCC 1 cut(s) 745
Hin1II CATG 4 cut(s) 63, 148, 473, 677
HinfI GANTC 5 cut(s) 173, 298, 335, 479, 658
HphI GGTGA 1 cut(s) 37
Hpy188I TCNGA 7 cut(s) 121, 292, 315, 405, 484, 532, 666
Hpy188III TCNNGA 1 cut(s) 15
HpyAV CCTTC 3 cut(s) 364, 385, 753
HpyCH4V TGCA 5 cut(s) 182, 358, 553, 625, 774
HpyF3I CTNAG 7 cut(s) 96, 118, 216, 314, 529, 564, 618
Hsp92II CATG 4 cut(s) 63, 148, 473, 677
Ksp22I TGATCA 3 cut(s) 277, 466, 688
Kzo9I GATC 7 cut(s) 257, 277, 287, 317, 466, 525, 688
LpnPI CCDG 8 cut(s) 20, 29, 56, 398, 545, 605, 753, 762
Lsp1109I GCAGC 3 cut(s) 34, 565, 568
LweI GCATC 1 cut(s) 761
MaeIII GTNAC 1 cut(s) 383
MalI GATC 7 cut(s) 259, 279, 289, 319, 468, 527, 690
MboI GATC 7 cut(s) 257, 277, 287, 317, 466, 525, 688
MboII GAAGA 7 cut(s) 40, 50, 193, 248, 318, 418, 452
MflI RGATCY 1 cut(s) 525
MluCI AATT 5 cut(s) 79, 156, 648, 696, 719
MlyI GAGTC 1 cut(s) 329
MnlI CCTC 6 cut(s) 24, 61, 180, 316, 670, 726
MseI TTAA 1 cut(s) 489
MslI CAYNNNNRTG 1 cut(s) 64
MspR9I CCNGG 1 cut(s) 44
MvaI CCWGG 1 cut(s) 44
NdeII GATC 7 cut(s) 257, 277, 287, 317, 466, 525, 688
NlaIII CATG 4 cut(s) 63, 148, 473, 677
NmeAIII GCCGAG 1 cut(s) 292
NspV TTCGAA 1 cut(s) 234
PfeI GAWTC 4 cut(s) 173, 298, 479, 658
PkrI GCNGC 3 cut(s) 49, 555, 558
Ple19I CGATCG 1 cut(s) 260
PleI GAGTC 1 cut(s) 329
PpsI GAGTC 1 cut(s) 329
PshBI ATTAAT 1 cut(s) 489
Psp6I CCWGG 1 cut(s) 42
PspGI CCWGG 1 cut(s) 42
PspPI GGNCC 2 cut(s) 729, 743
PsuI RGATCY 1 cut(s) 525
PvuI CGATCG 1 cut(s) 260
RsaI GTAC 2 cut(s) 254, 781
RsaNI GTAC 2 cut(s) 253, 780
RseI CAYNNNNRTG 1 cut(s) 64
SaqAI TTAA 1 cut(s) 489
SatI GCNGC 3 cut(s) 48, 554, 557
Sau3AI GATC 7 cut(s) 257, 277, 287, 317, 466, 525, 688
Sau96I GGNCC 2 cut(s) 729, 743
SchI GAGTC 1 cut(s) 329
ScrFI CCNGG 1 cut(s) 44
SetI ASST 8 cut(s) 112, 217, 222, 285, 297, 417, 624, 731
SfaNI GCATC 1 cut(s) 761
SfuI TTCGAA 1 cut(s) 234
SinI GGWCC 1 cut(s) 729
SmiMI CAYNNNNRTG 1 cut(s) 64
SmlI CTYRAG 1 cut(s) 379
SmoI CTYRAG 1 cut(s) 379
Sse9I AATT 5 cut(s) 79, 156, 648, 696, 719
StyD4I CCNGG 1 cut(s) 42
TaqI TCGA 3 cut(s) 8, 234, 286
TasI AATT 5 cut(s) 79, 156, 648, 696, 719
TfiI GAWTC 4 cut(s) 173, 298, 479, 658
Tru1I TTAA 1 cut(s) 489
Tru9I TTAA 1 cut(s) 489
TscAI CASTG 3 cut(s) 104, 772, 781
TseI GCWGC 3 cut(s) 47, 553, 556
TspDTI ATGAA 3 cut(s) 48, 165, 513
TspGWI ACGGA 1 cut(s) 558
TspRI CASTG 3 cut(s) 104, 772, 781
VpaK11BI GGWCC 1 cut(s) 729
VspI ATTAAT 1 cut(s) 489
XapI RAATTY 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.