AT2G48150

Belongs to the glutathione peroxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013809
Physical Location & Seq
Reverse (-)
19687831 .. 19689229
1399 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G48150.2

Sequence Viewer

Length: 513 bp
ATGGGTGCTTCTGCTTCGGTTCCCGAGAGATCCGTCCATCAATTCACTGTAAAGGATAGCTCCGGCAAGGACCTGAATATGAGCATTTACCAAGGGAAAGTCCTCCTCATCGTCAATGTTGCTTCCAAATGCGGTTTCACCGAAACAAACTATACACAGCTCACCGAACTTTACCGGAAATACAAGGACCAAGATTTTGAGATCTTGGCATTCCCTTGCAACCAGTTTCTATACCAGGAGCCCGGCACAAGTCAAGAGGCTCATGAATTTGCCTGCGAACGCTTTAAGGCCGAATACCCTGTTTTCCAAAAGGTACGCGTAAACGGTCAAAACGCAGCACCAATCTATAAATTCCTTAAGGCAAGTAAACCCACCTTTCTGGGTTCCAGAATTAAGTGGAACTTCACCAAGTTCTTGGTCGGCAAAGATGGCTTAGTGATTGATCGTTATGGCACGATGGTTACACCGCTATCAATCGAGAAAGACATCAAGAAAGCTCTTGAAGACGCTTGA

Protein Analysis

170

Amino Acids

19.3

Weight (kDa)

8.87

Isoelectric Point (pI)

25.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GSHPx PF00255 3 - 94 5.4e-35 Glutathione peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013809)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G48150 AT2G48150 AT3G63080
fragaria_vesca FvH4_2g23900
malus_domestica MD03G1268500.v1.1 MD11G1289300.v1.1
prunus_persica Prupe.8G244300_v2.0.a1
pyrus_communis pycom11g25670
rosa_chinensis RchiOBHm_Chr6g0291511
rosa_laevigata RLG00000012110
rosa_multiflora Rmu_sc0026626.1_g000001
rosa_roxburghii Rroxscaffold_7G00176010
rosa_rugosa Rorug06G0220100
rosa_samantha Rh6AG332200 Rh6BG339100 Rh6CG345300 Rh6DG332700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 318
AciI CCGC 2 cut(s) 132, 467
AclWI GGATC 1 cut(s) 24
AcsI RAATTY 2 cut(s) 266, 350
AfaI GTAC 1 cut(s) 315
AflII CTTAAG 1 cut(s) 356
AflIII ACRYGT 1 cut(s) 316
AgsI TTSAA 1 cut(s) 503
AjnI CCWGG 1 cut(s) 234
AjuI GAANNNNNNNTTGG 2 cut(s) 119, 151
AluBI AGCT 3 cut(s) 60, 160, 497
AluI AGCT 3 cut(s) 60, 160, 497
AlwI GGATC 1 cut(s) 24
Ama87I CYCGRG 1 cut(s) 23
AoxI GGCC 1 cut(s) 288
ApeKI GCWGC 1 cut(s) 335
ApoI RAATTY 2 cut(s) 266, 350
ArsI GACNNNNNNTTYG 2 cut(s) 179, 211
AspS9I GGNCC 2 cut(s) 70, 187
AsuC2I CCSGG 1 cut(s) 243
AsuHPI GGTGA 3 cut(s) 130, 154, 397
AvaI CYCGRG 1 cut(s) 23
AvaII GGWCC 2 cut(s) 70, 187
BanII GRGCYC 1 cut(s) 243
BbvI GCAGC 1 cut(s) 347
BccI CCATC 3 cut(s) 45, 422, 451
BciT130I CCWGG 1 cut(s) 236
BcnI CCSGG 1 cut(s) 243
BfrI CTTAAG 1 cut(s) 356
BglII AGATCT 1 cut(s) 201
BisI GCNGC 1 cut(s) 336
BlsI GCNGC 1 cut(s) 337
Bme1390I CCNGG 2 cut(s) 236, 243
Bme18I GGWCC 2 cut(s) 70, 187
BmeT110I CYCGRG 1 cut(s) 23
BmgT120I GGNCC 2 cut(s) 70, 187
BmiI GGNNCC 3 cut(s) 21, 240, 385
BmrFI CCNGG 2 cut(s) 236, 243
BpuMI CCSGG 1 cut(s) 243
BsaJI CCNNGG 1 cut(s) 91
BsaWI WCCGGW 1 cut(s) 174
Bse1I ACTGG 1 cut(s) 223
BseBI CCWGG 1 cut(s) 236
BseDI CCNNGG 1 cut(s) 91
BseNI ACTGG 1 cut(s) 223
BseRI GAGGAG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 347
Bsh1236I CGCG 1 cut(s) 318
BshFI GGCC 1 cut(s) 290
BsiHKCI CYCGRG 1 cut(s) 23
BsiSI CCGG 3 cut(s) 63, 175, 243
BsmI GAATGC 1 cut(s) 209
BsnI GGCC 1 cut(s) 290
BsoBI CYCGRG 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 243
Bsp143I GATC 3 cut(s) 29, 201, 442
BspACI CCGC 2 cut(s) 132, 467
BspANI GGCC 1 cut(s) 290
BspFNI CGCG 1 cut(s) 318
BspHI TCATGA 1 cut(s) 262
BspLI GGNNCC 3 cut(s) 21, 240, 385
BspPI GGATC 1 cut(s) 24
BspTI CTTAAG 1 cut(s) 356
BsrI ACTGG 1 cut(s) 223
BssECI CCNNGG 1 cut(s) 91
BssMI GATC 3 cut(s) 29, 201, 442
BssT1I CCWWGG 1 cut(s) 91
Bst2UI CCWGG 1 cut(s) 236
Bst4CI ACNGT 2 cut(s) 49, 326
BstAFI CTTAAG 1 cut(s) 356
BstC8I GCNNGC 1 cut(s) 274
BstDEI CTNAG 1 cut(s) 433
BstFNI CGCG 1 cut(s) 318
BstKTI GATC 3 cut(s) 32, 204, 445
BstMBI GATC 3 cut(s) 29, 201, 442
BstMWI GCNNNNNNNGC 1 cut(s) 429
BstNI CCWGG 1 cut(s) 236
BstSCI CCNGG 2 cut(s) 234, 241
BstUI CGCG 1 cut(s) 318
BstV1I GCAGC 1 cut(s) 347
BstX2I RGATCY 2 cut(s) 29, 201
BstXI CCANNNNNNTGG 2 cut(s) 379, 415
BstYI RGATCY 2 cut(s) 29, 201
BsuRI GGCC 1 cut(s) 290
BtsIMutI CAGTG 1 cut(s) 45
Cac8I GCNNGC 1 cut(s) 274
CciI TCATGA 1 cut(s) 262
Cfr13I GGNCC 2 cut(s) 70, 187
Csp6I GTAC 1 cut(s) 314
CviAII CATG 1 cut(s) 263
CviJI RGCY 7 cut(s) 60, 160, 241, 260, 290, 432, 497
CviKI_1 RGCY 7 cut(s) 60, 160, 241, 260, 290, 432, 497
CviQI GTAC 1 cut(s) 314
DdeI CTNAG 1 cut(s) 433
DpnI GATC 3 cut(s) 31, 203, 444
DpnII GATC 3 cut(s) 29, 201, 442
Eco130I CCWWGG 1 cut(s) 91
Eco24I GRGCYC 1 cut(s) 243
Eco47I GGWCC 2 cut(s) 70, 187
Eco88I CYCGRG 1 cut(s) 23
EcoO109I RGGNCCY 1 cut(s) 70
EcoRII CCWGG 1 cut(s) 234
EcoT14I CCWWGG 1 cut(s) 91
EcoT38I GRGCYC 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 91
FaeI CATG 1 cut(s) 266
FaiI YATR 6 cut(s) 80, 153, 232, 264, 348, 450
FalI AAGNNNNNCTT 2 cut(s) 386, 418
FatI CATG 1 cut(s) 262
Fnu4HI GCNGC 1 cut(s) 336
FriOI GRGCYC 1 cut(s) 243
Fsp4HI GCNGC 1 cut(s) 336
GluI GCNGC 1 cut(s) 336
HaeIII GGCC 1 cut(s) 290
HapII CCGG 3 cut(s) 63, 175, 243
Hin1II CATG 1 cut(s) 266
HpaII CCGG 3 cut(s) 63, 175, 243
HphI GGTGA 3 cut(s) 130, 154, 397
Hpy166II GTNNAC 2 cut(s) 322, 368
Hpy188III TCNNGA 7 cut(s) 23, 254, 263, 387, 478, 490, 500
Hpy8I GTNNAC 2 cut(s) 322, 368
HpyCH4III ACNGT 2 cut(s) 49, 326
HpyCH4V TGCA 1 cut(s) 219
HpyF10VI GCNNNNNNNGC 1 cut(s) 429
HpyF3I CTNAG 1 cut(s) 433
Hsp92II CATG 1 cut(s) 266
Kzo9I GATC 3 cut(s) 29, 201, 442
LmnI GCTCC 2 cut(s) 65, 238
Lsp1109I GCAGC 1 cut(s) 347
MaeIII GTNAC 1 cut(s) 460
MalI GATC 3 cut(s) 31, 203, 444
MboI GATC 3 cut(s) 29, 201, 442
MflI RGATCY 2 cut(s) 29, 201
MhlI GDGCHC 1 cut(s) 243
MluCI AATT 4 cut(s) 41, 266, 350, 390
MluI ACGCGT 1 cut(s) 316
MnlI CCTC 3 cut(s) 113, 116, 250
MseI TTAA 3 cut(s) 285, 357, 393
MspCI CTTAAG 1 cut(s) 356
MspI CCGG 3 cut(s) 63, 175, 243
MspR9I CCNGG 2 cut(s) 236, 243
Mva1269I GAATGC 1 cut(s) 209
MvaI CCWGG 1 cut(s) 236
MvnI CGCG 1 cut(s) 318
MwoI GCNNNNNNNGC 1 cut(s) 429
NciI CCSGG 1 cut(s) 243
NdeII GATC 3 cut(s) 29, 201, 442
NlaIII CATG 1 cut(s) 266
NlaIV GGNNCC 3 cut(s) 21, 240, 385
PagI TCATGA 1 cut(s) 262
PctI GAATGC 1 cut(s) 209
PkrI GCNGC 1 cut(s) 337
PpuMI RGGWCCY 1 cut(s) 70
Psp5II RGGWCCY 1 cut(s) 70
Psp6I CCWGG 1 cut(s) 234
PspGI CCWGG 1 cut(s) 234
PspN4I GGNNCC 3 cut(s) 21, 240, 385
PspPI GGNCC 2 cut(s) 70, 187
PspPPI RGGWCCY 1 cut(s) 70
PsuI RGATCY 2 cut(s) 29, 201
RsaI GTAC 1 cut(s) 315
RsaNI GTAC 1 cut(s) 314
SaqAI TTAA 3 cut(s) 285, 357, 393
SatI GCNGC 1 cut(s) 336
Sau3AI GATC 3 cut(s) 29, 201, 442
Sau96I GGNCC 2 cut(s) 70, 187
ScrFI CCNGG 2 cut(s) 236, 243
SduI GDGCHC 1 cut(s) 243
SetI ASST 6 cut(s) 62, 75, 162, 315, 377, 499
SinI GGWCC 2 cut(s) 70, 187
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 4 cut(s) 41, 266, 350, 390
SsiI CCGC 2 cut(s) 132, 467
StyD4I CCNGG 2 cut(s) 234, 241
StyI CCWWGG 1 cut(s) 91
TaaI ACNGT 2 cut(s) 49, 326
TaqI TCGA 1 cut(s) 477
TasI AATT 4 cut(s) 41, 266, 350, 390
Tru1I TTAA 3 cut(s) 285, 357, 393
Tru9I TTAA 3 cut(s) 285, 357, 393
TscAI CASTG 1 cut(s) 52
TseI GCWGC 1 cut(s) 335
TspDTI ATGAA 1 cut(s) 279
TspGWI ACGGA 1 cut(s) 22
TspRI CASTG 1 cut(s) 52
Vha464I CTTAAG 1 cut(s) 356
VpaK11BI GGWCC 2 cut(s) 70, 187
XapI RAATTY 2 cut(s) 266, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.