MD03G1268500.v1.1

HUA2-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0013809
Physical Location & Seq
Reverse (-)
35321836 .. 35330327
8492 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1268500.v1.1.491

Sequence Viewer

Length: 552 bp
ATGGGTGGTTCCCAATCTGTCTCTGAGAAATCCATCCATGAATTCACTGTAAAGGATACCAGAGGGAAGGAGGTGGACCTCAGCGTTTACAAAGGGAAGGTTGTCCTCGTTGTCAACGTTGCTTCCAAATGTGGGTTTACTGATACGAATTATACCCAGTTGACTGAGCTTTACAGCAAATACAAGGAGAAAGGTTTTGAGATCTTGGCATTTCCGTGCAATCAGTTTCTGAGGCAAGAGCCCGGCACAAGCCAGGATGCTGAACAATTCGCATGCACAAGATACAAGGCTGAATATCCAATATTCAAGAAGTATATCTTACAACGGAATTCTGTACTCTTCTGTATCCAGGTACGTGTCAATGGGCCAGATACCGAACCTGTTTACAAATTCCTCAAAGCAAGTAAATCTGGATTTCTGGGGAGTAGGATAAAGTGGAACTTCACCAAGTTCTTAGTTGACAAGGATGGCCATGTCATTGAACGGTACGGCCCAACCACCTCCCCGTTGAACATTGAGGCCGATATCAAGAAAGCGCTCGGGGAAGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CTD_bind GSHPx PWWP

Protein Analysis

184

Amino Acids

20.72

Weight (kDa)

9.05

Isoelectric Point (pI)

31.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Redoxin PF08534 10 - 71 6.4e-08 Redoxin
GSHPx PF00255 12 - 133 1.1e-34 Glutathione peroxidase
AhpC-TSA PF00578 12 - 74 8.7e-09 AhpC/TSA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013809)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G48150 AT2G48150 AT3G63080
fragaria_vesca FvH4_2g23900
malus_domestica MD03G1268500.v1.1 MD11G1289300.v1.1
prunus_persica Prupe.8G244300_v2.0.a1
pyrus_communis pycom11g25670
rosa_chinensis RchiOBHm_Chr6g0291511
rosa_laevigata RLG00000012110
rosa_multiflora Rmu_sc0026626.1_g000001
rosa_roxburghii Rroxscaffold_7G00176010
rosa_rugosa Rorug06G0220100
rosa_samantha Rh6AG332200 Rh6BG339100 Rh6CG345300 Rh6DG332700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 117
AcoI YGGCCR 1 cut(s) 469
AcsI RAATTY 3 cut(s) 41, 328, 389
AfaI GTAC 3 cut(s) 336, 354, 488
AfeI AGCGCT 1 cut(s) 537
AfiI CCNNNNNNNGG 1 cut(s) 132
AflIII ACRYGT 1 cut(s) 355
AgsI TTSAA 3 cut(s) 307, 482, 511
AjnI CCWGG 2 cut(s) 252, 348
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
Alw26I GTCTC 1 cut(s) 25
AlwNI CAGNNNCTG 1 cut(s) 229
Ama87I CYCGRG 1 cut(s) 539
Aor51HI AGCGCT 1 cut(s) 537
AoxI GGCC 4 cut(s) 365, 469, 490, 519
ApoI RAATTY 3 cut(s) 41, 328, 389
AspLEI GCGC 1 cut(s) 538
AspS9I GGNCC 3 cut(s) 76, 365, 491
AsuC2I CCSGG 1 cut(s) 243
AsuHPI GGTGA 1 cut(s) 436
AvaI CYCGRG 1 cut(s) 539
AvaII GGWCC 1 cut(s) 76
BalI TGGCCA 1 cut(s) 471
BanII GRGCYC 1 cut(s) 243
BbvCI CCTCAGC 1 cut(s) 80
BccI CCATC 2 cut(s) 41, 461
BceAI ACGGC 1 cut(s) 505
BciT130I CCWGG 2 cut(s) 254, 350
BciVI GTATCC 2 cut(s) 49, 356
BcnI CCSGG 1 cut(s) 243
BcoDI GTCTC 1 cut(s) 25
BfoI RGCGCY 1 cut(s) 539
BfuI GTATCC 2 cut(s) 49, 356
BglII AGATCT 1 cut(s) 201
Bme1390I CCNGG 3 cut(s) 243, 254, 350
Bme18I GGWCC 1 cut(s) 76
BmeT110I CYCGRG 1 cut(s) 539
BmgT120I GGNCC 3 cut(s) 76, 365, 491
BmiI GGNNCC 1 cut(s) 10
BmrFI CCNGG 3 cut(s) 243, 254, 350
BmrI ACTGGG 1 cut(s) 151
BmsI GCATC 1 cut(s) 247
BmuI ACTGGG 1 cut(s) 151
Bpu10I CCTNAGC 1 cut(s) 80
BpuMI CCSGG 1 cut(s) 243
BsaAI YACGTR 1 cut(s) 356
Bsc4I CCNNNNNNNGG 1 cut(s) 132
Bse1I ACTGG 1 cut(s) 157
BseBI CCWGG 2 cut(s) 254, 350
BseGI GGATG 3 cut(s) 33, 262, 472
BseLI CCNNNNNNNGG 1 cut(s) 132
BseMII CTCAG 4 cut(s) 15, 94, 156, 221
BseNI ACTGG 1 cut(s) 157
BshFI GGCC 4 cut(s) 367, 471, 492, 521
BsiHKCI CYCGRG 1 cut(s) 539
BsiSI CCGG 1 cut(s) 243
BslI CCNNNNNNNGG 1 cut(s) 132
BsmAI GTCTC 1 cut(s) 25
BsnI GGCC 4 cut(s) 367, 471, 492, 521
BsoBI CYCGRG 1 cut(s) 539
Bsp1286I GDGCHC 1 cut(s) 243
Bsp143I GATC 1 cut(s) 201
BspANI GGCC 4 cut(s) 367, 471, 492, 521
BspCNI CTCAG 4 cut(s) 16, 93, 157, 222
BspLI GGNNCC 1 cut(s) 10
BsrI ACTGG 1 cut(s) 157
BssMI GATC 1 cut(s) 201
Bst2UI CCWGG 2 cut(s) 254, 350
Bst4CI ACNGT 2 cut(s) 49, 486
Bst6I CTCTTC 1 cut(s) 344
BstBAI YACGTR 1 cut(s) 356
BstC8I GCNNGC 1 cut(s) 274
BstDEI CTNAG 5 cut(s) 24, 80, 165, 230, 454
BstF5I GGATG 3 cut(s) 33, 262, 472
BstH2I RGCGCY 1 cut(s) 539
BstHHI GCGC 1 cut(s) 538
BstKTI GATC 1 cut(s) 204
BstMAI GTCTC 1 cut(s) 25
BstMBI GATC 1 cut(s) 201
BstNI CCWGG 2 cut(s) 254, 350
BstNSI RCATGY 1 cut(s) 276
BstSCI CCNGG 3 cut(s) 241, 252, 348
BstX2I RGATCY 1 cut(s) 201
BstYI RGATCY 1 cut(s) 201
BsuI GTATCC 2 cut(s) 49, 356
BsuRI GGCC 4 cut(s) 367, 471, 492, 521
BtsCI GGATG 3 cut(s) 33, 262, 472
BtsIMutI CAGTG 1 cut(s) 45
Cac8I GCNNGC 1 cut(s) 274
CaiI CAGNNNCTG 1 cut(s) 229
CfoI GCGC 1 cut(s) 538
Cfr13I GGNCC 3 cut(s) 76, 365, 491
Csp6I GTAC 3 cut(s) 335, 353, 487
CviAII CATG 3 cut(s) 38, 273, 473
CviJI RGCY 8 cut(s) 169, 241, 252, 290, 367, 471, 492, 521
CviKI_1 RGCY 8 cut(s) 169, 241, 252, 290, 367, 471, 492, 521
CviQI GTAC 3 cut(s) 335, 353, 487
DdeI CTNAG 5 cut(s) 24, 80, 165, 230, 454
DpnI GATC 1 cut(s) 203
DpnII GATC 1 cut(s) 201
EaeI YGGCCR 1 cut(s) 469
Eam1104I CTCTTC 1 cut(s) 344
EarI CTCTTC 1 cut(s) 344
Eco24I GRGCYC 1 cut(s) 243
Eco32I GATATC 1 cut(s) 526
Eco47I GGWCC 1 cut(s) 76
Eco47III AGCGCT 1 cut(s) 537
Eco88I CYCGRG 1 cut(s) 539
EcoRI GAATTC 2 cut(s) 41, 328
EcoRII CCWGG 2 cut(s) 252, 348
EcoRV GATATC 1 cut(s) 526
EcoT38I GRGCYC 1 cut(s) 243
FaeI CATG 3 cut(s) 41, 276, 476
FaiI YATR 5 cut(s) 39, 153, 274, 315, 474
FalI AAGNNNNNCTT 4 cut(s) 302, 334, 425, 457
FatI CATG 3 cut(s) 37, 272, 472
FokI GGATG 3 cut(s) 20, 269, 479
FriOI GRGCYC 1 cut(s) 243
GlaI GCGC 1 cut(s) 537
HaeII RGCGCY 1 cut(s) 539
HaeIII GGCC 4 cut(s) 367, 471, 492, 521
HapII CCGG 1 cut(s) 243
HhaI GCGC 1 cut(s) 538
Hin1II CATG 3 cut(s) 41, 276, 476
Hin6I GCGC 1 cut(s) 536
HinP1I GCGC 1 cut(s) 536
HincII GTYRAC 3 cut(s) 115, 162, 460
HindII GTYRAC 3 cut(s) 115, 162, 460
HpaII CCGG 1 cut(s) 243
HphI GGTGA 1 cut(s) 436
Hpy166II GTNNAC 7 cut(s) 76, 88, 115, 138, 162, 385, 460
Hpy188I TCNGA 2 cut(s) 25, 231
Hpy188III TCNNGA 3 cut(s) 307, 411, 529
Hpy8I GTNNAC 7 cut(s) 76, 88, 115, 138, 162, 385, 460
HpyAV CCTTC 2 cut(s) 61, 91
HpyCH4III ACNGT 2 cut(s) 49, 486
HpyCH4IV ACGT 2 cut(s) 117, 355
HpyCH4V TGCA 2 cut(s) 219, 276
HpyF3I CTNAG 5 cut(s) 24, 80, 165, 230, 454
HpySE526I ACGT 2 cut(s) 117, 355
Hsp92II CATG 3 cut(s) 41, 276, 476
HspAI GCGC 1 cut(s) 536
Kzo9I GATC 1 cut(s) 201
LweI GCATC 1 cut(s) 247
MaeII ACGT 2 cut(s) 117, 355
MalI GATC 1 cut(s) 203
MboI GATC 1 cut(s) 201
MboII GAAGA 1 cut(s) 331
MflI RGATCY 1 cut(s) 201
MhlI GDGCHC 1 cut(s) 243
MlsI TGGCCA 1 cut(s) 471
MluCI AATT 5 cut(s) 41, 148, 266, 328, 389
MluNI TGGCCA 1 cut(s) 471
MnlI CCTC 8 cut(s) 56, 64, 89, 116, 225, 404, 511, 511
Mox20I TGGCCA 1 cut(s) 471
MscI TGGCCA 1 cut(s) 471
MslI CAYNNNNRTG 1 cut(s) 214
Msp20I TGGCCA 1 cut(s) 471
MspI CCGG 1 cut(s) 243
MspR9I CCNGG 3 cut(s) 243, 254, 350
MvaI CCWGG 2 cut(s) 254, 350
NciI CCSGG 1 cut(s) 243
NdeII GATC 1 cut(s) 201
NlaIII CATG 3 cut(s) 41, 276, 476
NlaIV GGNNCC 1 cut(s) 10
NspI RCATGY 1 cut(s) 276
PaeI GCATGC 1 cut(s) 276
PcsI WCGNNNNNNNCGW 1 cut(s) 114
Ppu21I YACGTR 1 cut(s) 356
Psp1406I AACGTT 1 cut(s) 117
Psp6I CCWGG 2 cut(s) 252, 348
PspGI CCWGG 2 cut(s) 252, 348
PspN4I GGNNCC 1 cut(s) 10
PspPI GGNCC 3 cut(s) 76, 365, 491
PstNI CAGNNNCTG 1 cut(s) 229
PsuI RGATCY 1 cut(s) 201
RsaI GTAC 3 cut(s) 336, 354, 488
RsaNI GTAC 3 cut(s) 335, 353, 487
RseI CAYNNNNRTG 1 cut(s) 214
Sau3AI GATC 1 cut(s) 201
Sau96I GGNCC 3 cut(s) 76, 365, 491
ScrFI CCNGG 3 cut(s) 243, 254, 350
SduI GDGCHC 1 cut(s) 243
SfaNI GCATC 1 cut(s) 247
SinI GGWCC 1 cut(s) 76
SmiMI CAYNNNNRTG 1 cut(s) 214
SphI GCATGC 1 cut(s) 276
Sse9I AATT 5 cut(s) 41, 148, 266, 328, 389
SspI AATATT 1 cut(s) 303
StyD4I CCNGG 3 cut(s) 241, 252, 348
TaaI ACNGT 2 cut(s) 49, 486
TaiI ACGT 2 cut(s) 120, 358
TasI AATT 5 cut(s) 41, 148, 266, 328, 389
TatI WGTACW 1 cut(s) 334
TscAI CASTG 1 cut(s) 52
TspDTI ATGAA 1 cut(s) 54
TspGWI ACGGA 2 cut(s) 204, 340
TspRI CASTG 1 cut(s) 52
VpaK11BI GGWCC 1 cut(s) 76
XapI RAATTY 3 cut(s) 41, 328, 389
XceI RCATGY 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.