Rmu_sc0026626.1_g000001

Belongs to the glutathione peroxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0026626.1
OG0013809
Physical Location & Seq
Forward (+)
453 .. 2625
2173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0026626.1_g000001.1.cds

Sequence Viewer

Length: 402 bp
atgggtgctgcacactcgtcgtgcctctccgaaaaatccatccacgaattcacagtcaaggatagcaaaggcaaggacgtcgacctcagcgtttacaaagggaaggtcctcctcgtggttaacgtcgcttccaaatgtggctttaccgataccaattacacacagttgactgagctttacagcaaatacaaggacaaaggttttgagatcttggcatttccatgcaaccagtttctgaagcaggagcctggaacaagcctggatgcgattgaatttgcatgcacaaggtacaaggctgaatatccaatcttcaagaaggtagttgaatatcttttaccatatcatatttatcagctagtcaatgagattattctatttcaatctggtgcttcatgcttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00480 ko00590 ko04918 map00480 map00590 map04918
Pfam Domains
Protein Families
GSHPx

Protein Analysis

133

Amino Acids

15.01

Weight (kDa)

6.81

Isoelectric Point (pI)

38.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013809)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G48150 AT2G48150 AT3G63080
fragaria_vesca FvH4_2g23900
malus_domestica MD03G1268500.v1.1 MD11G1289300.v1.1
prunus_persica Prupe.8G244300_v2.0.a1
pyrus_communis pycom11g25670
rosa_chinensis RchiOBHm_Chr6g0291511
rosa_laevigata RLG00000012110
rosa_multiflora Rmu_sc0026626.1_g000001
rosa_roxburghii Rroxscaffold_7G00176010
rosa_rugosa Rorug06G0220100
rosa_samantha Rh6AG332200 Rh6BG339100 Rh6CG345300 Rh6DG332700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 81
AccI GTMKAC 1 cut(s) 81
AcsI RAATTY 2 cut(s) 47, 272
AcuI CTGAAG 1 cut(s) 257
AcyI GRCGYC 1 cut(s) 78
AfaI GTAC 1 cut(s) 290
AfiI CCNNNNNNNGG 1 cut(s) 115
AgsI TTSAA 4 cut(s) 272, 313, 326, 380
AjnI CCWGG 2 cut(s) 247, 258
AluBI AGCT 2 cut(s) 175, 355
AluI AGCT 2 cut(s) 175, 355
AlwNI CAGNNNCTG 1 cut(s) 235
ApeKI GCWGC 1 cut(s) 8
ApoI RAATTY 2 cut(s) 47, 272
ArsI GACNNNNNNTTYG 6 cut(s) 39, 71, 90, 122, 185, 217
AspS9I GGNCC 1 cut(s) 106
AvaII GGWCC 1 cut(s) 106
BauI CACGAG 1 cut(s) 113
BbvCI CCTCAGC 1 cut(s) 86
BccI CCATC 1 cut(s) 47
BcgI CGANNNNNNTGC 3 cut(s) 34, 61, 95
BciT130I CCWGG 2 cut(s) 249, 260
BfaI CTAG 1 cut(s) 356
BglII AGATCT 1 cut(s) 207
BisI GCNGC 1 cut(s) 9
BlsI GCNGC 1 cut(s) 10
Bme1390I CCNGG 2 cut(s) 249, 260
Bme18I GGWCC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 246
BmrFI CCNGG 2 cut(s) 249, 260
BmsI GCATC 1 cut(s) 253
Bpu10I CCTNAGC 1 cut(s) 86
BsaHI GRCGYC 1 cut(s) 78
Bsc4I CCNNNNNNNGG 1 cut(s) 115
Bse1I ACTGG 1 cut(s) 229
BseBI CCWGG 2 cut(s) 249, 260
BseGI GGATG 2 cut(s) 39, 268
BseLI CCNNNNNNNGG 1 cut(s) 115
BseMII CTCAG 2 cut(s) 100, 162
BseNI ACTGG 1 cut(s) 229
BseRI GAGGAG 1 cut(s) 101
BslI CCNNNNNNNGG 1 cut(s) 115
Bsp143I GATC 1 cut(s) 207
BspCNI CTCAG 2 cut(s) 99, 163
BspLI GGNNCC 1 cut(s) 246
BsrI ACTGG 1 cut(s) 229
BssMI GATC 1 cut(s) 207
BssNI GRCGYC 1 cut(s) 78
BssSI CACGAG 1 cut(s) 113
Bst2BI CACGAG 1 cut(s) 113
Bst2UI CCWGG 2 cut(s) 249, 260
Bst4CI ACNGT 2 cut(s) 55, 165
BstACI GRCGYC 1 cut(s) 78
BstC8I GCNNGC 1 cut(s) 280
BstDEI CTNAG 2 cut(s) 86, 171
BstF5I GGATG 2 cut(s) 39, 268
BstKTI GATC 1 cut(s) 210
BstMBI GATC 1 cut(s) 207
BstNI CCWGG 2 cut(s) 249, 260
BstNSI RCATGY 1 cut(s) 282
BstSCI CCNGG 2 cut(s) 247, 258
BstX2I RGATCY 1 cut(s) 207
BstYI RGATCY 1 cut(s) 207
BtsCI GGATG 2 cut(s) 39, 268
Cac8I GCNNGC 1 cut(s) 280
CaiI CAGNNNCTG 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 106
Csp6I GTAC 1 cut(s) 289
CviAII CATG 3 cut(s) 222, 279, 393
CviJI RGCY 6 cut(s) 141, 175, 247, 258, 296, 355
CviKI_1 RGCY 6 cut(s) 141, 175, 247, 258, 296, 355
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 2 cut(s) 86, 171
DpnI GATC 1 cut(s) 209
DpnII GATC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 257
EcoO109I RGGNCCY 1 cut(s) 106
EcoRI GAATTC 1 cut(s) 47
EcoRII CCWGG 2 cut(s) 247, 258
FaeI CATG 3 cut(s) 225, 282, 396
FaiI YATR 5 cut(s) 223, 280, 340, 345, 394
FatI CATG 3 cut(s) 221, 278, 392
FblI GTMKAC 1 cut(s) 81
Fnu4HI GCNGC 1 cut(s) 9
FokI GGATG 2 cut(s) 26, 275
Fsp4HI GCNGC 1 cut(s) 9
FspBI CTAG 1 cut(s) 356
GluI GCNGC 1 cut(s) 9
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 3 cut(s) 225, 282, 396
HincII GTYRAC 3 cut(s) 82, 121, 168
HindII GTYRAC 3 cut(s) 82, 121, 168
HpaI GTTAAC 1 cut(s) 121
Hpy166II GTNNAC 4 cut(s) 82, 94, 121, 168
Hpy188I TCNGA 2 cut(s) 31, 237
Hpy188III TCNNGA 1 cut(s) 313
Hpy8I GTNNAC 4 cut(s) 82, 94, 121, 168
Hpy99I CGWCG 3 cut(s) 22, 83, 128
HpyAV CCTTC 2 cut(s) 97, 310
HpyCH4III ACNGT 2 cut(s) 55, 165
HpyCH4IV ACGT 2 cut(s) 78, 123
HpyCH4V TGCA 4 cut(s) 11, 225, 278, 282
HpyF3I CTNAG 2 cut(s) 86, 171
HpySE526I ACGT 2 cut(s) 78, 123
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 3 cut(s) 225, 282, 396
KspAI GTTAAC 1 cut(s) 121
Kzo9I GATC 1 cut(s) 207
LmnI GCTCC 1 cut(s) 244
LpnPI CCDG 7 cut(s) 227, 234, 242, 245, 261, 272, 369
LweI GCATC 1 cut(s) 253
MaeI CTAG 1 cut(s) 356
MaeII ACGT 2 cut(s) 78, 123
MalI GATC 1 cut(s) 209
MboI GATC 1 cut(s) 207
MboII GAAGA 1 cut(s) 301
MflI RGATCY 1 cut(s) 207
MluCI AATT 3 cut(s) 47, 154, 272
MnlI CCTC 4 cut(s) 35, 95, 119, 122
MseI TTAA 1 cut(s) 120
MslI CAYNNNNRTG 2 cut(s) 220, 397
MspR9I CCNGG 2 cut(s) 249, 260
MvaI CCWGG 2 cut(s) 249, 260
NdeII GATC 1 cut(s) 207
NlaIII CATG 3 cut(s) 225, 282, 396
NlaIV GGNNCC 1 cut(s) 246
NspI RCATGY 1 cut(s) 282
PaeI GCATGC 1 cut(s) 282
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 120
PkrI GCNGC 1 cut(s) 10
PpuMI RGGWCCY 1 cut(s) 106
Psp5II RGGWCCY 1 cut(s) 106
Psp6I CCWGG 2 cut(s) 247, 258
PspGI CCWGG 2 cut(s) 247, 258
PspN4I GGNNCC 1 cut(s) 246
PspPI GGNCC 1 cut(s) 106
PspPPI RGGWCCY 1 cut(s) 106
PstNI CAGNNNCTG 1 cut(s) 235
PsuI RGATCY 1 cut(s) 207
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
RseI CAYNNNNRTG 2 cut(s) 220, 397
SalI GTCGAC 1 cut(s) 80
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 1 cut(s) 9
Sau3AI GATC 1 cut(s) 207
Sau96I GGNCC 1 cut(s) 106
ScrFI CCNGG 2 cut(s) 249, 260
SetI ASST 9 cut(s) 81, 87, 108, 126, 177, 202, 290, 321, 357
SfaNI GCATC 1 cut(s) 253
SinI GGWCC 1 cut(s) 106
SmiMI CAYNNNNRTG 2 cut(s) 220, 397
SphI GCATGC 1 cut(s) 282
Sse9I AATT 3 cut(s) 47, 154, 272
SspMI CTAG 1 cut(s) 356
StyD4I CCNGG 2 cut(s) 247, 258
TaaI ACNGT 2 cut(s) 55, 165
TaiI ACGT 2 cut(s) 81, 126
TaqI TCGA 1 cut(s) 81
TasI AATT 3 cut(s) 47, 154, 272
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TseI GCWGC 1 cut(s) 8
TspDTI ATGAA 1 cut(s) 381
VpaK11BI GGWCC 1 cut(s) 106
XapI RAATTY 2 cut(s) 47, 272
XceI RCATGY 1 cut(s) 282
XmiI GTMKAC 1 cut(s) 81
XspI CTAG 1 cut(s) 356
ZraI GACGTC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.