MD11G1289300.v1.1

HUA2-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0013809
Physical Location & Seq
Reverse (-)
40899955 .. 40903254
3300 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1289300.v1.1.491

Sequence Viewer

Length: 597 bp
ATGGGTGGCTTCCAATCTGTCTCTGAACAATCCATCCATGAATTCACAGTGAAGGATAGCAGAGGGAAGGAGGTGGACCTCGGCGTTTACAAGGGGAAGGTCGTCCTCGTCGTCAACGTTGCTTCCAAATGTGGGTTTACTGATACGAATTATACCCAGTTGACTGAGATTTACAGCAAATGCAAAGAGAAAGGTTTTGAGATCTTGGCATTTCCGTGCAATCAGTTTCTAAAGCAAGAGCCCGGGACAAGTCAGGATGCTGAACAATTTGCATGTACAAGATACAAGGCTGAATATCCAATATTCAAGAAGGTACGTGTCAATGGGCCGGATACAGAACCTGTGTACAAATTCCTCAAAGCAAGTAAATCTGGATTTCTGGGGAATAGTATAAAGTGGAACTTCACCAAGTTCTTAGTTGACAAGGATGGCCATGTCATTGAACGGTACGCCCCAACCACCTCCCCCTTGAGCATTGAGCATTACTCTGATCATGGCTTAAAACTTATCTTTGGCACAGGCCGATATCAAGAAAGCGCTAGGGGAGGCGTGATGTTATCAGGCAGTTCATCTTCAGACAACAGTGAAAGAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CTD_bind GSHPx PWWP

Protein Analysis

199

Amino Acids

22.06

Weight (kDa)

8.56

Isoelectric Point (pI)

36.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Redoxin PF08534 10 - 98 4e-06 Redoxin
AhpC-TSA PF00578 11 - 75 1.5e-06 AhpC/TSA family
GSHPx PF00255 12 - 120 5.2e-39 Glutathione peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013809)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G48150 AT2G48150 AT3G63080
fragaria_vesca FvH4_2g23900
malus_domestica MD03G1268500.v1.1 MD11G1289300.v1.1
prunus_persica Prupe.8G244300_v2.0.a1
pyrus_communis pycom11g25670
rosa_chinensis RchiOBHm_Chr6g0291511
rosa_laevigata RLG00000012110
rosa_multiflora Rmu_sc0026626.1_g000001
rosa_roxburghii Rroxscaffold_7G00176010
rosa_rugosa Rorug06G0220100
rosa_samantha Rh6AG332200 Rh6BG339100 Rh6CG345300 Rh6DG332700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 117
AcoI YGGCCR 1 cut(s) 430
AcsI RAATTY 2 cut(s) 41, 350
AcuI CTGAAG 1 cut(s) 558
AfaI GTAC 4 cut(s) 277, 315, 347, 449
AfeI AGCGCT 1 cut(s) 538
AfiI CCNNNNNNNGG 1 cut(s) 132
AflIII ACRYGT 1 cut(s) 316
AgsI TTSAA 2 cut(s) 307, 443
AloI GAACNNNNNNTCC 2 cut(s) 18, 50
Alw26I GTCTC 1 cut(s) 25
AlwNI CAGNNNCTG 1 cut(s) 341
Ama87I CYCGRG 1 cut(s) 242
Aor51HI AGCGCT 1 cut(s) 538
AoxI GGCC 3 cut(s) 326, 430, 520
ApoI RAATTY 2 cut(s) 41, 350
AspLEI GCGC 1 cut(s) 539
AspS9I GGNCC 2 cut(s) 76, 326
AsuC2I CCSGG 2 cut(s) 243, 244
AsuHPI GGTGA 1 cut(s) 397
AvaI CYCGRG 1 cut(s) 242
AvaII GGWCC 1 cut(s) 76
BalI TGGCCA 1 cut(s) 432
BanII GRGCYC 1 cut(s) 243
BccI CCATC 2 cut(s) 41, 422
BciVI GTATCC 1 cut(s) 325
BclI TGATCA 1 cut(s) 490
BcnI CCSGG 2 cut(s) 243, 244
BcoDI GTCTC 1 cut(s) 25
BfaI CTAG 1 cut(s) 540
BfoI RGCGCY 1 cut(s) 540
BfuI GTATCC 1 cut(s) 325
BglII AGATCT 1 cut(s) 201
Bme1390I CCNGG 2 cut(s) 243, 244
Bme18I GGWCC 1 cut(s) 76
BmeT110I CYCGRG 1 cut(s) 242
BmgT120I GGNCC 2 cut(s) 76, 326
BmrFI CCNGG 2 cut(s) 243, 244
BmrI ACTGGG 1 cut(s) 151
BmsI GCATC 1 cut(s) 247
BmuI ACTGGG 1 cut(s) 151
BplI GAGNNNNNCTC 2 cut(s) 470, 502
BpuEI CTTGAG 1 cut(s) 490
BpuMI CCSGG 2 cut(s) 243, 244
BsaAI YACGTR 1 cut(s) 317
BsaJI CCNNGG 2 cut(s) 79, 242
Bsc4I CCNNNNNNNGG 1 cut(s) 132
Bse1I ACTGG 1 cut(s) 157
BseDI CCNNGG 2 cut(s) 79, 242
BseGI GGATG 3 cut(s) 33, 262, 433
BseLI CCNNNNNNNGG 1 cut(s) 132
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 157
BshFI GGCC 3 cut(s) 328, 432, 522
BsiHKCI CYCGRG 1 cut(s) 242
BsiSI CCGG 2 cut(s) 243, 329
BslFI GGGAC 1 cut(s) 259
BslI CCNNNNNNNGG 1 cut(s) 132
BsmAI GTCTC 1 cut(s) 25
BsmFI GGGAC 1 cut(s) 259
BsnI GGCC 3 cut(s) 328, 432, 522
BsoBI CYCGRG 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 243
Bsp1407I TGTACA 2 cut(s) 275, 345
Bsp143I GATC 2 cut(s) 201, 490
BspANI GGCC 3 cut(s) 328, 432, 522
BspCNI CTCAG 1 cut(s) 157
BsrGI TGTACA 2 cut(s) 275, 345
BsrI ACTGG 1 cut(s) 157
BssECI CCNNGG 2 cut(s) 79, 242
BssMI GATC 2 cut(s) 201, 490
Bst4CI ACNGT 3 cut(s) 49, 447, 584
BstAUI TGTACA 2 cut(s) 275, 345
BstBAI YACGTR 1 cut(s) 317
BstDEI CTNAG 2 cut(s) 165, 415
BstF5I GGATG 3 cut(s) 33, 262, 433
BstH2I RGCGCY 1 cut(s) 540
BstHHI GCGC 1 cut(s) 539
BstKTI GATC 2 cut(s) 204, 493
BstMAI GTCTC 1 cut(s) 25
BstMBI GATC 2 cut(s) 201, 490
BstNSI RCATGY 1 cut(s) 276
BstSCI CCNGG 2 cut(s) 241, 242
BstX2I RGATCY 1 cut(s) 201
BstYI RGATCY 1 cut(s) 201
BsuI GTATCC 1 cut(s) 325
BsuRI GGCC 3 cut(s) 328, 432, 522
BtsCI GGATG 3 cut(s) 33, 262, 433
BtsIMutI CAGTG 2 cut(s) 54, 589
CaiI CAGNNNCTG 1 cut(s) 341
CfoI GCGC 1 cut(s) 539
Cfr13I GGNCC 2 cut(s) 76, 326
Cfr9I CCCGGG 1 cut(s) 242
Csp6I GTAC 4 cut(s) 276, 314, 346, 448
CviAII CATG 4 cut(s) 38, 273, 434, 494
CviJI RGCY 7 cut(s) 9, 241, 290, 328, 432, 498, 522
CviKI_1 RGCY 7 cut(s) 9, 241, 290, 328, 432, 498, 522
CviQI GTAC 4 cut(s) 276, 314, 346, 448
DdeI CTNAG 2 cut(s) 165, 415
DpnI GATC 2 cut(s) 203, 492
DpnII GATC 2 cut(s) 201, 490
EaeI YGGCCR 1 cut(s) 430
Eco24I GRGCYC 1 cut(s) 243
Eco32I GATATC 1 cut(s) 527
Eco47I GGWCC 1 cut(s) 76
Eco47III AGCGCT 1 cut(s) 538
Eco57I CTGAAG 1 cut(s) 558
Eco88I CYCGRG 1 cut(s) 242
EcoRI GAATTC 1 cut(s) 41
EcoRV GATATC 1 cut(s) 527
EcoT38I GRGCYC 1 cut(s) 243
FaeI CATG 4 cut(s) 41, 276, 437, 497
FaiI YATR 7 cut(s) 39, 153, 274, 392, 435, 495, 595
FalI AAGNNNNNCTT 2 cut(s) 386, 418
FaqI GGGAC 1 cut(s) 259
FatI CATG 4 cut(s) 37, 272, 433, 493
FbaI TGATCA 1 cut(s) 490
FokI GGATG 3 cut(s) 20, 269, 440
FriOI GRGCYC 1 cut(s) 243
FspBI CTAG 1 cut(s) 540
GlaI GCGC 1 cut(s) 538
HaeII RGCGCY 1 cut(s) 540
HaeIII GGCC 3 cut(s) 328, 432, 522
HapII CCGG 2 cut(s) 243, 329
HhaI GCGC 1 cut(s) 539
Hin1II CATG 4 cut(s) 41, 276, 437, 497
Hin6I GCGC 1 cut(s) 537
HinP1I GCGC 1 cut(s) 537
HincII GTYRAC 3 cut(s) 115, 162, 421
HindII GTYRAC 3 cut(s) 115, 162, 421
HpaII CCGG 2 cut(s) 243, 329
HphI GGTGA 1 cut(s) 397
Hpy166II GTNNAC 7 cut(s) 76, 88, 115, 138, 162, 346, 421
Hpy188I TCNGA 3 cut(s) 25, 490, 577
Hpy188III TCNNGA 4 cut(s) 254, 307, 372, 530
Hpy8I GTNNAC 7 cut(s) 76, 88, 115, 138, 162, 346, 421
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 4 cut(s) 46, 61, 91, 304
HpyCH4III ACNGT 3 cut(s) 49, 447, 584
HpyCH4IV ACGT 2 cut(s) 117, 316
HpyCH4V TGCA 3 cut(s) 183, 219, 272
HpyF3I CTNAG 2 cut(s) 165, 415
HpySE526I ACGT 2 cut(s) 117, 316
Hsp92II CATG 4 cut(s) 41, 276, 437, 497
HspAI GCGC 1 cut(s) 537
Ksp22I TGATCA 1 cut(s) 490
Kzo9I GATC 2 cut(s) 201, 490
LpnPI CCDG 9 cut(s) 170, 239, 256, 342, 354, 357, 365, 504, 546
LweI GCATC 1 cut(s) 247
MaeI CTAG 1 cut(s) 540
MaeII ACGT 2 cut(s) 117, 316
MalI GATC 2 cut(s) 203, 492
MboI GATC 2 cut(s) 201, 490
MboII GAAGA 1 cut(s) 564
MflI RGATCY 1 cut(s) 201
MhlI GDGCHC 1 cut(s) 243
MlsI TGGCCA 1 cut(s) 432
MluCI AATT 4 cut(s) 41, 148, 266, 350
MluNI TGGCCA 1 cut(s) 432
MnlI CCTC 7 cut(s) 56, 64, 89, 116, 365, 472, 539
Mox20I TGGCCA 1 cut(s) 432
MscI TGGCCA 1 cut(s) 432
MseI TTAA 1 cut(s) 500
MslI CAYNNNNRTG 1 cut(s) 214
Msp20I TGGCCA 1 cut(s) 432
MspI CCGG 2 cut(s) 243, 329
MspR9I CCNGG 2 cut(s) 243, 244
NciI CCSGG 2 cut(s) 243, 244
NdeII GATC 2 cut(s) 201, 490
NlaIII CATG 4 cut(s) 41, 276, 437, 497
NmeAIII GCCGAG 1 cut(s) 60
NspI RCATGY 1 cut(s) 276
PcsI WCGNNNNNNNCGW 2 cut(s) 108, 114
Ppu21I YACGTR 1 cut(s) 317
Psp1406I AACGTT 1 cut(s) 117
PspPI GGNCC 2 cut(s) 76, 326
PstNI CAGNNNCTG 1 cut(s) 341
PsuI RGATCY 1 cut(s) 201
RsaI GTAC 4 cut(s) 277, 315, 347, 449
RsaNI GTAC 4 cut(s) 276, 314, 346, 448
RseI CAYNNNNRTG 1 cut(s) 214
SaqAI TTAA 1 cut(s) 500
Sau3AI GATC 2 cut(s) 201, 490
Sau96I GGNCC 2 cut(s) 76, 326
ScrFI CCNGG 2 cut(s) 243, 244
SduI GDGCHC 1 cut(s) 243
SetI ASST 9 cut(s) 75, 81, 102, 120, 196, 315, 319, 343, 464
SfaNI GCATC 1 cut(s) 247
SinI GGWCC 1 cut(s) 76
SmaI CCCGGG 1 cut(s) 244
SmiMI CAYNNNNRTG 1 cut(s) 214
SmlI CTYRAG 1 cut(s) 469
SmoI CTYRAG 1 cut(s) 469
Sse9I AATT 4 cut(s) 41, 148, 266, 350
SspI AATATT 1 cut(s) 303
SspMI CTAG 1 cut(s) 540
StyD4I CCNGG 2 cut(s) 241, 242
TaaI ACNGT 3 cut(s) 49, 447, 584
TaiI ACGT 2 cut(s) 120, 319
TasI AATT 4 cut(s) 41, 148, 266, 350
TatI WGTACW 2 cut(s) 275, 345
Tru1I TTAA 1 cut(s) 500
Tru9I TTAA 1 cut(s) 500
TscAI CASTG 2 cut(s) 54, 589
TspDTI ATGAA 2 cut(s) 54, 558
TspGWI ACGGA 1 cut(s) 204
TspMI CCCGGG 1 cut(s) 242
TspRI CASTG 2 cut(s) 54, 589
VpaK11BI GGWCC 1 cut(s) 76
XapI RAATTY 2 cut(s) 41, 350
XceI RCATGY 1 cut(s) 276
XmaI CCCGGG 1 cut(s) 242
XspI CTAG 1 cut(s) 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.