AT3G01190

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010695
Physical Location & Seq
Reverse (-)
67032 .. 68665
1634 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G01190.1

Sequence Viewer

Length: 966 bp
ATGGCAGCTTCTAAGCGACTAGTTGTCTCTTGCTTGTTCTTAGTTTTGTTGTTTGCTCAAGCCAATTCGCAAGGTTTGAAAGTAGGTTTCTACAGCAAAACATGCCCACAACTCGAGGGTATAGTTAAAAAGGTCGTGTTCGATGCGATGAACAAAGCACCAACACTTGGTGCTCCTTTGCTTAGAATGTTCTTCCACGACTGCTTCGTTCGGGGATGTGACGGATCAGTTTTGTTAGATAAACCAAACAATCAAGGTGAGAAGAGTGCAGTTCCTAACCTAAGTCTTCGAGGGTTTGGCATCATAGACGATTCCAAGGCGGCTCTAGAAAAAGTGTGTCCGGGAATTGTTTCTTGCTCTGATATCTTGGCACTTGTCGCTAGAGACGCAATGGTTGCACTTGAAGGACCATCATGGGAAGTTGAAACGGGAAGAAGAGACGGTAGGGTTTCTAACATCAACGAAGTCAACTTGCCATCACCTTTTGATAACATCACCAAGCTTATCAGCGATTTTCGCTCAAAGGGCCTCAACGAGAAGGATCTAGTCATTCTCTCGGGTGGTCACACAATTGGAATGGGACATTGTCCTTTATTGACAAACCGGCTTTACAACTTCACCGGAAAAGGAGACAGCGACCCAAGTTTGGACTCGGAGTACGCCGCTAAGCTCAGGAAGAAATGCAAGCCCACCGATACGACGACGGCTCTAGAGATGGATCCGGGGAGTTTCAAAACATTTGACTTGAGCTACTTCACGCTAGTGGCTAAGAGAAGAGGACTTTTCCAGTCGGATGCTGCTCTACTCGACAACTCCAAGACTAGGGCTTATGTCTTGCAACAGATAAGAACTCATGGGTCAATGTTCTTTAACGACTTTGGTGTCTCTATGGTGAAAATGGGTCGGACTGGAGTTCTTACGGGTAAGGCCGGGGAGATCCGTAAGACGTGTCGGTCTGCTAATTAA

Protein Analysis

321

Amino Acids

34.95

Weight (kDa)

9.16

Isoelectric Point (pI)

37.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 42 - 279 2.9e-82 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 881, 952
AccB7I CCANNNNNTGG 1 cut(s) 167
AciI CCGC 2 cut(s) 320, 663
AclWI GGATC 5 cut(s) 232, 549, 713, 726, 931
AdeI CACNNNGTG 1 cut(s) 170
AfaI GTAC 1 cut(s) 659
AfiI CCNNNNNNNGG 3 cut(s) 167, 646, 822
AflIII ACRYGT 1 cut(s) 947
AgsI TTSAA 4 cut(s) 79, 404, 425, 733
AhdI GACNNNNNGTC 1 cut(s) 23
AhlI ACTAGT 1 cut(s) 19
AjiI CACGTC 1 cut(s) 948
AleI CACNNNNGTG 1 cut(s) 761
AluBI AGCT 4 cut(s) 8, 502, 670, 750
AluI AGCT 4 cut(s) 8, 502, 670, 750
Alw21I GWGCWC 1 cut(s) 175
Alw26I GTCTC 5 cut(s) 31, 378, 432, 624, 889
AlwI GGATC 5 cut(s) 232, 549, 713, 726, 931
Ama87I CYCGRG 2 cut(s) 113, 556
AoxI GGCC 2 cut(s) 526, 927
ApeKI GCWGC 2 cut(s) 5, 797
Asp700I GAANNNNTTC 1 cut(s) 349
AspS9I GGNCC 2 cut(s) 407, 526
AsuC2I CCSGG 3 cut(s) 342, 723, 931
AsuHPI GGTGA 5 cut(s) 269, 471, 487, 610, 904
AvaI CYCGRG 2 cut(s) 113, 556
AvaII GGWCC 1 cut(s) 407
BamHI GGATCC 1 cut(s) 718
BbsI GAAGAC 1 cut(s) 278
Bbv12I GWGCWC 1 cut(s) 175
BbvI GCAGC 2 cut(s) 17, 784
BccI CCATC 3 cut(s) 418, 484, 709
BceAI ACGGC 1 cut(s) 720
BcnI CCSGG 3 cut(s) 342, 723, 931
BcoDI GTCTC 5 cut(s) 31, 378, 432, 624, 889
BcuI ACTAGT 1 cut(s) 19
BfaI CTAG 7 cut(s) 20, 326, 381, 545, 710, 761, 822
BfmI CTRYAG 1 cut(s) 91
BisI GCNGC 4 cut(s) 6, 321, 663, 798
BlpI GCTNAGC 1 cut(s) 666
BlsI GCNGC 4 cut(s) 7, 322, 664, 799
Bme1390I CCNGG 3 cut(s) 342, 723, 931
Bme18I GGWCC 1 cut(s) 407
BmeRI GACNNNNNGTC 1 cut(s) 23
BmeT110I CYCGRG 2 cut(s) 113, 556
BmgBI CACGTC 1 cut(s) 948
BmgT120I GGNCC 2 cut(s) 407, 526
BmiI GGNNCC 1 cut(s) 720
BmrFI CCNGG 3 cut(s) 342, 723, 931
BmsI GCATC 3 cut(s) 133, 309, 784
BpiI GAAGAC 1 cut(s) 278
BpmI CTGGAG 1 cut(s) 930
Bpu10I CCTNAGC 1 cut(s) 671
Bpu1102I GCTNAGC 1 cut(s) 666
BpuEI CTTGAG 2 cut(s) 42, 766
BpuMI CCSGG 3 cut(s) 342, 723, 931
BsaJI CCNNGG 3 cut(s) 315, 722, 930
BsaWI WCCGGW 1 cut(s) 620
Bsc4I CCNNNNNNNGG 3 cut(s) 167, 646, 822
Bse118I RCCGGY 1 cut(s) 603
Bse1I ACTGG 2 cut(s) 787, 913
Bse3DI GCAATG 1 cut(s) 396
BseDI CCNNGG 3 cut(s) 315, 722, 930
BseGI GGATG 2 cut(s) 221, 799
BseLI CCNNNNNNNGG 3 cut(s) 167, 646, 822
BseMI GCAATG 1 cut(s) 396
BseMII CTCAG 1 cut(s) 685
BseNI ACTGG 2 cut(s) 787, 913
BseXI GCAGC 2 cut(s) 17, 784
BsgI GTGCAG 1 cut(s) 288
BshFI GGCC 2 cut(s) 528, 929
BsiHKAI GWGCWC 1 cut(s) 175
BsiHKCI CYCGRG 2 cut(s) 113, 556
BsiSI CCGG 5 cut(s) 341, 604, 621, 722, 930
BslFI GGGAC 1 cut(s) 594
BslI CCNNNNNNNGG 3 cut(s) 167, 646, 822
BsmAI GTCTC 5 cut(s) 31, 378, 432, 624, 889
BsmBI CGTCTC 2 cut(s) 378, 432
BsmFI GGGAC 1 cut(s) 594
BsnI GGCC 2 cut(s) 528, 929
BsoBI CYCGRG 2 cut(s) 113, 556
Bsp1286I GDGCHC 1 cut(s) 175
Bsp143I GATC 4 cut(s) 224, 541, 718, 936
Bsp1720I GCTNAGC 1 cut(s) 666
BspACI CCGC 2 cut(s) 320, 663
BspANI GGCC 2 cut(s) 528, 929
BspCNI CTCAG 1 cut(s) 684
BspLI GGNNCC 1 cut(s) 720
BspPI GGATC 5 cut(s) 232, 549, 713, 726, 931
BsrDI GCAATG 1 cut(s) 396
BsrFI RCCGGY 1 cut(s) 603
BsrI ACTGG 2 cut(s) 787, 913
BssAI RCCGGY 1 cut(s) 603
BssECI CCNNGG 3 cut(s) 315, 722, 930
BssMI GATC 4 cut(s) 224, 541, 718, 936
BssT1I CCWWGG 1 cut(s) 315
Bst4CI ACNGT 1 cut(s) 443
Bst6I CTCTTC 3 cut(s) 257, 430, 769
BstAPI GCANNNNNTGC 2 cut(s) 102, 395
BstC8I GCNNGC 1 cut(s) 686
BstDEI CTNAG 7 cut(s) 12, 40, 182, 281, 666, 671, 768
BstF5I GGATG 2 cut(s) 221, 799
BstKTI GATC 4 cut(s) 227, 544, 721, 939
BstMAI GTCTC 5 cut(s) 31, 378, 432, 624, 889
BstMBI GATC 4 cut(s) 224, 541, 718, 936
BstMWI GCNNNNNNNGC 6 cut(s) 102, 377, 386, 395, 516, 525
BstNSI RCATGY 1 cut(s) 105
BstSCI CCNGG 3 cut(s) 340, 721, 929
BstSFI CTRYAG 1 cut(s) 91
BstV1I GCAGC 2 cut(s) 17, 784
BstV2I GAAGAC 1 cut(s) 278
BstX2I RGATCY 3 cut(s) 541, 718, 936
BstYI RGATCY 3 cut(s) 541, 718, 936
BsuRI GGCC 2 cut(s) 528, 929
BtgZI GCGATG 1 cut(s) 161
BtrI CACGTC 1 cut(s) 948
BtsCI GGATG 2 cut(s) 221, 799
Cac8I GCNNGC 1 cut(s) 686
Cfr10I RCCGGY 1 cut(s) 603
Cfr13I GGNCC 2 cut(s) 407, 526
CseI GACGC 1 cut(s) 395
Csp6I GTAC 1 cut(s) 658
CviAII CATG 3 cut(s) 102, 414, 854
CviQI GTAC 1 cut(s) 658
DdeI CTNAG 7 cut(s) 12, 40, 182, 281, 666, 671, 768
DpnI GATC 4 cut(s) 226, 543, 720, 938
DpnII GATC 4 cut(s) 224, 541, 718, 936
DraIII CACNNNGTG 1 cut(s) 170
DrdI GACNNNNNNGTC 2 cut(s) 881, 952
DriI GACNNNNNGTC 1 cut(s) 23
DseDI GACNNNNNNGTC 2 cut(s) 881, 952
Eam1104I CTCTTC 3 cut(s) 257, 430, 769
Eam1105I GACNNNNNGTC 1 cut(s) 23
EarI CTCTTC 3 cut(s) 257, 430, 769
Eco130I CCWWGG 1 cut(s) 315
Eco32I GATATC 1 cut(s) 364
Eco47I GGWCC 1 cut(s) 407
Eco88I CYCGRG 2 cut(s) 113, 556
EcoO109I RGGNCCY 1 cut(s) 526
EcoRV GATATC 1 cut(s) 364
EcoT14I CCWWGG 1 cut(s) 315
ErhI CCWWGG 1 cut(s) 315
Esp3I CGTCTC 2 cut(s) 378, 432
FaeI CATG 3 cut(s) 105, 417, 857
FaiI YATR 7 cut(s) 103, 122, 305, 415, 831, 855, 890
FaqI GGGAC 1 cut(s) 594
FatI CATG 3 cut(s) 101, 413, 853
Fnu4HI GCNGC 4 cut(s) 6, 321, 663, 798
FokI GGATG 2 cut(s) 228, 806
Fsp4HI GCNGC 4 cut(s) 6, 321, 663, 798
FspBI CTAG 7 cut(s) 20, 326, 381, 545, 710, 761, 822
GluI GCNGC 4 cut(s) 6, 321, 663, 798
GsuI CTGGAG 1 cut(s) 930
HaeIII GGCC 2 cut(s) 528, 929
HapII CCGG 5 cut(s) 341, 604, 621, 722, 930
HgaI GACGC 1 cut(s) 395
Hin1II CATG 3 cut(s) 105, 417, 857
HincII GTYRAC 1 cut(s) 469
HindII GTYRAC 1 cut(s) 469
HindIII AAGCTT 1 cut(s) 500
HinfI GANTC 2 cut(s) 311, 650
HpaII CCGG 5 cut(s) 341, 604, 621, 722, 930
HphI GGTGA 5 cut(s) 269, 471, 487, 610, 904
Hpy166II GTNNAC 1 cut(s) 469
Hpy188I TCNGA 4 cut(s) 361, 655, 793, 906
Hpy188III TCNNGA 3 cut(s) 326, 673, 710
Hpy8I GTNNAC 1 cut(s) 469
Hpy99I CGWCG 2 cut(s) 703, 706
HpyAV CCTTC 2 cut(s) 398, 532
HpyCH4III ACNGT 1 cut(s) 443
HpyCH4IV ACGT 1 cut(s) 947
HpyCH4V TGCA 4 cut(s) 269, 398, 684, 838
HpyF10VI GCNNNNNNNGC 6 cut(s) 102, 377, 386, 395, 516, 525
HpyF3I CTNAG 7 cut(s) 12, 40, 182, 281, 666, 671, 768
HpySE526I ACGT 1 cut(s) 947
Hsp92II CATG 3 cut(s) 105, 417, 857
Kzo9I GATC 4 cut(s) 224, 541, 718, 936
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 8 cut(s) 354, 617, 634, 658, 735, 800, 894, 943
Lsp1109I GCAGC 2 cut(s) 17, 784
LweI GCATC 3 cut(s) 133, 309, 784
MaeI CTAG 7 cut(s) 20, 326, 381, 545, 710, 761, 822
MaeII ACGT 1 cut(s) 947
MaeIII GTNAC 2 cut(s) 218, 563
MalI GATC 4 cut(s) 226, 543, 720, 938
MboI GATC 4 cut(s) 224, 541, 718, 936
MboII GAAGA 7 cut(s) 184, 274, 278, 444, 447, 688, 786
MfeI CAATTG 1 cut(s) 570
MflI RGATCY 3 cut(s) 541, 718, 936
MhlI GDGCHC 1 cut(s) 175
MluCI AATT 4 cut(s) 64, 345, 570, 961
MlyI GAGTC 1 cut(s) 644
MmeI TCCRAC 2 cut(s) 771, 884
MnlI CCTC 4 cut(s) 109, 284, 539, 770
MroXI GAANNNNTTC 1 cut(s) 349
MseI TTAA 3 cut(s) 126, 870, 964
MslI CAYNNNNRTG 1 cut(s) 761
MspI CCGG 5 cut(s) 341, 604, 621, 722, 930
MspR9I CCNGG 3 cut(s) 342, 723, 931
MunI CAATTG 1 cut(s) 570
MwoI GCNNNNNNNGC 6 cut(s) 102, 377, 386, 395, 516, 525
NciI CCSGG 3 cut(s) 342, 723, 931
NdeII GATC 4 cut(s) 224, 541, 718, 936
NlaIII CATG 3 cut(s) 105, 417, 857
NlaIV GGNNCC 1 cut(s) 720
NmuCI GTSAC 2 cut(s) 218, 563
NspI RCATGY 1 cut(s) 105
OliI CACNNNNGTG 1 cut(s) 761
PaeR7I CTCGAG 1 cut(s) 113
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PdmI GAANNNNTTC 1 cut(s) 349
PfeI GAWTC 1 cut(s) 311
PflFI GACNNNGTC 1 cut(s) 585
PflMI CCANNNNNTGG 1 cut(s) 167
PfoI TCCNGGA 1 cut(s) 340
PkrI GCNGC 4 cut(s) 7, 322, 664, 799
PleI GAGTC 1 cut(s) 644
PpsI GAGTC 1 cut(s) 644
PspN4I GGNNCC 1 cut(s) 720
PspPI GGNCC 2 cut(s) 407, 526
PspXI VCTCGAGB 1 cut(s) 113
PsuI RGATCY 3 cut(s) 541, 718, 936
PsyI GACNNNGTC 1 cut(s) 585
RsaI GTAC 1 cut(s) 659
RsaNI GTAC 1 cut(s) 658
RseI CAYNNNNRTG 1 cut(s) 761
SaqAI TTAA 3 cut(s) 126, 870, 964
SatI GCNGC 4 cut(s) 6, 321, 663, 798
Sau3AI GATC 4 cut(s) 224, 541, 718, 936
Sau96I GGNCC 2 cut(s) 407, 526
SchI GAGTC 1 cut(s) 644
ScrFI CCNGG 3 cut(s) 342, 723, 931
SduI GDGCHC 1 cut(s) 175
SfaNI GCATC 3 cut(s) 133, 309, 784
SfcI CTRYAG 1 cut(s) 91
Sfr274I CTCGAG 1 cut(s) 113
SinI GGWCC 1 cut(s) 407
SlaI CTCGAG 1 cut(s) 113
SmiMI CAYNNNNRTG 1 cut(s) 761
SmlI CTYRAG 3 cut(s) 57, 113, 745
SmoI CTYRAG 3 cut(s) 57, 113, 745
SpeI ACTAGT 1 cut(s) 19
Sse9I AATT 4 cut(s) 64, 345, 570, 961
SsiI CCGC 2 cut(s) 320, 663
SspMI CTAG 7 cut(s) 20, 326, 381, 545, 710, 761, 822
StyD4I CCNGG 3 cut(s) 340, 721, 929
StyI CCWWGG 1 cut(s) 315
TaaI ACNGT 1 cut(s) 443
TaiI ACGT 1 cut(s) 950
TaqI TCGA 4 cut(s) 114, 141, 289, 807
TaqII GACCGA 1 cut(s) 942
TasI AATT 4 cut(s) 64, 345, 570, 961
TauI GCSGC 2 cut(s) 323, 665
TfiI GAWTC 1 cut(s) 311
Tru1I TTAA 3 cut(s) 126, 870, 964
Tru9I TTAA 3 cut(s) 126, 870, 964
TseFI GTSAC 2 cut(s) 218, 563
TseI GCWGC 2 cut(s) 5, 797
Tsp45I GTSAC 2 cut(s) 218, 563
TspDTI ATGAA 1 cut(s) 164
TspGWI ACGGA 2 cut(s) 237, 929
Tth111I GACNNNGTC 1 cut(s) 585
Van91I CCANNNNNTGG 1 cut(s) 167
VpaK11BI GGWCC 1 cut(s) 407
XbaI TCTAGA 2 cut(s) 325, 709
XceI RCATGY 1 cut(s) 105
XhoI CTCGAG 1 cut(s) 113
XmnI GAANNNNTTC 1 cut(s) 349
XspI CTAG 7 cut(s) 20, 326, 381, 545, 710, 761, 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.