Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0010695

Physical Location & Seq

Genomic Coordinates Reverse (-)

57221181 .. 57221563

Gene Structure 383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0409700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGGTGGCGTGGCTATCTGGCGAGAGGGAGGTGATGGTGACGCTGCTGCCGGTGGTGGAATGGCCTGGGAAGAGCCGGCCGGATGGCAAAGTCGTGCTCTCTACACCCGGGTACTCAGACTTGGGCCTGTTGAGCTTTGGGTCAGTACACAGTGGCTCTATGCCGGCAATAAGTCCCTACCACTTTTGGTTAGGGCGACGTGGGCTTTGTCCCGGTATGCACACTCAGTGTGCCTTGTCTGGCCTAGACATCATGATGTCTTTACAAATGACCAGAATGTTATTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

96

Amino Acids

10.63

Weight (kDa)

6.82

Isoelectric Point (pI)

44.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010695)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01190 AT5G15180
fragaria_vesca	FvH4_3g02700
prunus_persica	Prupe.4G026700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0004041
rosa_laevigata	RLG00000031198 RLG00000031200
rosa_roxburghii	Rroxscaffold_1G00071930
rosa_rugosa	Rorug04G0409600 Rorug04G0409700
rosa_samantha	Rh5AG037000 Rh5AG037100 Rh5BG036000 Rh5BG036100 Rh5CG039700 Rh5CG039800 Rh5DG035600 Rh5DG035700
rosa_wichuraiana	Rw5G003350 Rw5G003360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	78
AdeI	CACNNNGTG	1 cut(s)	229
AfaI	GTAC	2 cut(s)	114, 148
AjiI	CACGTC	1 cut(s)	201
AjnI	CCWGG	1 cut(s)	65
AluBI	AGCT	1 cut(s)	136
AluI	AGCT	1 cut(s)	136
Alw21I	GWGCWC	1 cut(s)	100
Ama87I	CYCGRG	1 cut(s)	108
AoxI	GGCC	4 cut(s)	63, 78, 125, 242
ApeKI	GCWGC	2 cut(s)	44, 47
ArsI	GACNNNNNNTTYG	2 cut(s)	190, 222
AspS9I	GGNCC	1 cut(s)	125
AsuC2I	CCSGG	3 cut(s)	109, 110, 214
AsuHPI	GGTGA	2 cut(s)	44, 50
AvaI	CYCGRG	1 cut(s)	108
Bbv12I	GWGCWC	1 cut(s)	100
BbvI	GCAGC	2 cut(s)	31, 34
BccI	CCATC	2 cut(s)	29, 78
BciT130I	CCWGG	1 cut(s)	67
BcnI	CCSGG	3 cut(s)	109, 110, 214
BfaI	CTAG	1 cut(s)	246
BisI	GCNGC	2 cut(s)	45, 48
BlsI	GCNGC	2 cut(s)	46, 49
Bme1390I	CCNGG	4 cut(s)	67, 109, 110, 214
BmeT110I	CYCGRG	1 cut(s)	108
BmgBI	CACGTC	1 cut(s)	201
BmgT120I	GGNCC	1 cut(s)	125
BmrFI	CCNGG	4 cut(s)	67, 109, 110, 214
BpuMI	CCSGG	3 cut(s)	109, 110, 214
BsaJI	CCNNGG	2 cut(s)	66, 108
Bse118I	RCCGGY	3 cut(s)	50, 76, 164
BseBI	CCWGG	1 cut(s)	67
BseDI	CCNNGG	2 cut(s)	66, 108
BseGI	GGATG	1 cut(s)	89
BseMII	CTCAG	2 cut(s)	130, 240
BseX3I	CGGCCG	1 cut(s)	78
BseXI	GCAGC	2 cut(s)	31, 34
Bsh1285I	CGRYCG	1 cut(s)	81
BshFI	GGCC	4 cut(s)	65, 80, 127, 244
BsiEI	CGRYCG	1 cut(s)	81
BsiHKAI	GWGCWC	1 cut(s)	100
BsiHKCI	CYCGRG	1 cut(s)	108
BsiSI	CCGG	6 cut(s)	51, 77, 81, 109, 165, 214
BslFI	GGGAC	2 cut(s)	160, 196
BsmFI	GGGAC	2 cut(s)	160, 196
BsnI	GGCC	4 cut(s)	65, 80, 127, 244
BsoBI	CYCGRG	1 cut(s)	108
Bsp1286I	GDGCHC	1 cut(s)	100
BspANI	GGCC	4 cut(s)	65, 80, 127, 244
BspCNI	CTCAG	2 cut(s)	129, 239
BspHI	TCATGA	2 cut(s)	253, 287
BspQI	GCTCTTC	1 cut(s)	66
BsrFI	RCCGGY	3 cut(s)	50, 76, 164
BssAI	RCCGGY	3 cut(s)	50, 76, 164
BssECI	CCNNGG	2 cut(s)	66, 108
Bst2UI	CCWGG	1 cut(s)	67
Bst4CI	ACNGT	1 cut(s)	153
Bst6I	CTCTTC	1 cut(s)	66
BstC8I	GCNNGC	2 cut(s)	78, 166
BstDEI	CTNAG	2 cut(s)	116, 226
BstF5I	GGATG	1 cut(s)	89
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	2 cut(s)	133, 203
BstNI	CCWGG	1 cut(s)	67
BstSCI	CCNGG	4 cut(s)	65, 107, 108, 212
BstV1I	GCAGC	2 cut(s)	31, 34
BstZI	CGGCCG	1 cut(s)	78
BsuRI	GGCC	4 cut(s)	65, 80, 127, 244
BtrI	CACGTC	1 cut(s)	201
BtsCI	GGATG	1 cut(s)	89
BtsIMutI	CAGTG	2 cut(s)	158, 234
Cac8I	GCNNGC	2 cut(s)	78, 166
CciI	TCATGA	2 cut(s)	253, 287
Cfr10I	RCCGGY	3 cut(s)	50, 76, 164
Cfr13I	GGNCC	1 cut(s)	125
Cfr9I	CCCGGG	1 cut(s)	108
CseI	GACGC	1 cut(s)	50
Csp6I	GTAC	2 cut(s)	113, 147
CviAII	CATG	2 cut(s)	254, 288
CviJI	RGCY	9 cut(s)	14, 65, 76, 80, 127, 136, 157, 206, 244
CviKI_1	RGCY	9 cut(s)	14, 65, 76, 80, 127, 136, 157, 206, 244
CviQI	GTAC	2 cut(s)	113, 147
DdeI	CTNAG	2 cut(s)	116, 226
DraIII	CACNNNGTG	1 cut(s)	229
EaeI	YGGCCR	1 cut(s)	78
EagI	CGGCCG	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
EclXI	CGGCCG	1 cut(s)	78
Eco52I	CGGCCG	1 cut(s)	78
Eco88I	CYCGRG	1 cut(s)	108
EcoRII	CCWGG	1 cut(s)	65
FaeI	CATG	2 cut(s)	257, 291
FaiI	YATR	4 cut(s)	162, 219, 255, 289
FaqI	GGGAC	2 cut(s)	160, 196
FatI	CATG	2 cut(s)	253, 287
Fnu4HI	GCNGC	2 cut(s)	45, 48
FokI	GGATG	1 cut(s)	96
Fsp4HI	GCNGC	2 cut(s)	45, 48
FspBI	CTAG	1 cut(s)	246
GluI	GCNGC	2 cut(s)	45, 48
HaeIII	GGCC	4 cut(s)	65, 80, 127, 244
HapII	CCGG	6 cut(s)	51, 77, 81, 109, 165, 214
HgaI	GACGC	1 cut(s)	50
Hin1II	CATG	2 cut(s)	257, 291
HpaII	CCGG	6 cut(s)	51, 77, 81, 109, 165, 214
HphI	GGTGA	2 cut(s)	44, 50
Hpy166II	GTNNAC	1 cut(s)	149
Hpy188I	TCNGA	1 cut(s)	119
Hpy188III	TCNNGA	2 cut(s)	254, 288
Hpy8I	GTNNAC	1 cut(s)	149
Hpy99I	CGWCG	1 cut(s)	202
HpyCH4III	ACNGT	1 cut(s)	153
HpyCH4IV	ACGT	1 cut(s)	200
HpyCH4V	TGCA	1 cut(s)	221
HpyF10VI	GCNNNNNNNGC	2 cut(s)	133, 203
HpyF3I	CTNAG	2 cut(s)	116, 226
HpySE526I	ACGT	1 cut(s)	200
Hsp92II	CATG	2 cut(s)	257, 291
KroI	GCCGGC	2 cut(s)	76, 164
KroNI	GCCGGC	2 cut(s)	78, 166
LguI	GCTCTTC	1 cut(s)	66
Lsp1109I	GCAGC	2 cut(s)	31, 34
MaeI	CTAG	1 cut(s)	246
MaeII	ACGT	1 cut(s)	200
MaeIII	GTNAC	1 cut(s)	38
MboII	GAAGA	1 cut(s)	83
MhlI	GDGCHC	1 cut(s)	100
MnlI	CCTC	2 cut(s)	19, 23
MroNI	GCCGGC	2 cut(s)	76, 164
MslI	CAYNNNNRTG	1 cut(s)	255
MspI	CCGG	6 cut(s)	51, 77, 81, 109, 165, 214
MspR9I	CCNGG	4 cut(s)	67, 109, 110, 214
MvaI	CCWGG	1 cut(s)	67
MwoI	GCNNNNNNNGC	2 cut(s)	133, 203
NaeI	GCCGGC	2 cut(s)	78, 166
NciI	CCSGG	3 cut(s)	109, 110, 214
NgoMIV	GCCGGC	2 cut(s)	76, 164
NlaIII	CATG	2 cut(s)	257, 291
NmuCI	GTSAC	1 cut(s)	38
PagI	TCATGA	2 cut(s)	253, 287
PciSI	GCTCTTC	1 cut(s)	66
PdiI	GCCGGC	2 cut(s)	78, 166
PkrI	GCNGC	2 cut(s)	46, 49
Psp6I	CCWGG	1 cut(s)	65
PspGI	CCWGG	1 cut(s)	65
PspPI	GGNCC	1 cut(s)	125
RsaI	GTAC	2 cut(s)	114, 148
RsaNI	GTAC	2 cut(s)	113, 147
RseI	CAYNNNNRTG	1 cut(s)	255
SapI	GCTCTTC	1 cut(s)	66
SatI	GCNGC	2 cut(s)	45, 48
Sau96I	GGNCC	1 cut(s)	125
ScrFI	CCNGG	4 cut(s)	67, 109, 110, 214
SduI	GDGCHC	1 cut(s)	100
SetI	ASST	3 cut(s)	34, 138, 203
SmaI	CCCGGG	1 cut(s)	110
SmiMI	CAYNNNNRTG	1 cut(s)	255
SspMI	CTAG	1 cut(s)	246
StyD4I	CCNGG	4 cut(s)	65, 107, 108, 212
TaaI	ACNGT	1 cut(s)	153
TaiI	ACGT	1 cut(s)	203
TatI	WGTACW	1 cut(s)	146
TscAI	CASTG	2 cut(s)	158, 234
TseFI	GTSAC	1 cut(s)	38
TseI	GCWGC	2 cut(s)	44, 47
Tsp45I	GTSAC	1 cut(s)	38
TspDTI	ATGAA	1 cut(s)	276
TspMI	CCCGGG	1 cut(s)	108
TspRI	CASTG	2 cut(s)	158, 234
XmaI	CCCGGG	1 cut(s)	108
XspI	CTAG	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.