Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0010695

Physical Location & Seq

Genomic Coordinates Reverse (-)

93060488 .. 93061529

Gene Structure 1042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00071930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGCTACTTCAAAGCTTATCTTCATCCTGATCCAAGGGATCGTTCTGCTTTCTGTCCTTGACTTTGCAAATGCACAGGGACTGAAAGTAGGGTTTTATGCAAAGTCATGCCCGAAAGCCGAGGCCATAGTCAAGAAGGTTATCGCTCAAACCATGGCGGTAGCACCTTCACTCGCTGGTCCTTTGCTGAGAATGCATTTCCATGATTGCTTTGTCAGGGGTTGCGACGGTTCAGTGCTATTGAATTCTTCAACGAACCAAGCCGAAAAGGATGCAATTCCAAACCTAAGCCTTCGAGGGTTTGAAGTCATCGACAAAGTTAAGTCTGCTTTGGAAAAAGCATGCCCTGGAGTGGTTTCATGCTCTGACATCGTAGCCATTGTAGCTAGGGATGTGGTTGTGGCGGTAAGCAGTACATGGGGTCACACCATTGGGACGTCTCATTGCTCTTCCTTCAACAACCGTCTTTACAACTTCACCGGAAAGGGCGATACCGATCCCACCTTGGATAGCAACTACATTGCAAGGTTGAAGTTGAAATGCAAGCCCAATGACCAAACAACTCTCGTGGAGATGGATCCCGGGAGTTCTAAGATATTTGACGTTTCCTATTATACTCTTGTGGCCAAGACAAGGGGCCTCTTTCAGTCAGATGCAGCTCTTCTTGATGACAGTGAGACCAAAGCTTACGTTAAAAACCATGCCACACCTAAGGGAAAAGCTAGTTTCTTGAAGGATTTTGGTGTTTCAATGAGGAAAATGGGTAGGATCGGAGTTCTCACGGGGAATGCAGGAGAGATCAGGAAAGTGTGCAGCAAGATTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

275

Amino Acids

29.59

Weight (kDa)

9.2

Isoelectric Point (pI)

19.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	44 - 136	3e-32	Peroxidase
peroxidase	PF00141	141 - 235	3.7e-23	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010695)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01190 AT5G15180
fragaria_vesca	FvH4_3g02700
prunus_persica	Prupe.4G026700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0004041
rosa_laevigata	RLG00000031198 RLG00000031200
rosa_roxburghii	Rroxscaffold_1G00071930
rosa_rugosa	Rorug04G0409600 Rorug04G0409700
rosa_samantha	Rh5AG037000 Rh5AG037100 Rh5BG036000 Rh5BG036100 Rh5CG039700 Rh5CG039800 Rh5DG035600 Rh5DG035700
rosa_wichuraiana	Rw5G003350 Rw5G003360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	440
AciI	CCGC	2 cut(s)	158, 404
AclWI	GGATC	6 cut(s)	25, 47, 491, 572, 585, 776
AcoI	YGGCCR	1 cut(s)	624
AcsI	RAATTY	1 cut(s)	244
AcyI	GRCGYC	1 cut(s)	437
AfaI	GTAC	1 cut(s)	415
AfiI	CCNNNNNNNGG	2 cut(s)	352, 633
AgsI	TTSAA	9 cut(s)	12, 244, 252, 305, 457, 532, 538, 733, 750
AjnI	CCWGG	1 cut(s)	346
AjuI	GAANNNNNNNTTGG	2 cut(s)	27, 59
AluBI	AGCT	5 cut(s)	16, 386, 659, 686, 722
AluI	AGCT	5 cut(s)	16, 386, 659, 686, 722
Alw26I	GTCTC	2 cut(s)	444, 671
AlwI	GGATC	6 cut(s)	25, 47, 491, 572, 585, 776
AlwNI	CAGNNNCTG	1 cut(s)	82
Ama87I	CYCGRG	1 cut(s)	581
AoxI	GGCC	3 cut(s)	123, 624, 637
ApeKI	GCWGC	2 cut(s)	656, 813
ApoI	RAATTY	1 cut(s)	244
AseI	ATTAAT	1 cut(s)	822
AspS9I	GGNCC	2 cut(s)	179, 637
AsuC2I	CCSGG	2 cut(s)	582, 583
AsuHPI	GGTGA	1 cut(s)	469
AvaI	CYCGRG	1 cut(s)	581
AvaII	GGWCC	1 cut(s)	179
AxyI	CCTNAGG	1 cut(s)	711
BalI	TGGCCA	1 cut(s)	626
BamHI	GGATCC	1 cut(s)	577
BauI	CACGAG	1 cut(s)	566
BbvI	GCAGC	1 cut(s)	668
BccI	CCATC	1 cut(s)	568
BcgI	CGANNNNNNTGC	2 cut(s)	254, 288
BciT130I	CCWGG	1 cut(s)	348
BcnI	CCSGG	2 cut(s)	582, 583
BcoDI	GTCTC	2 cut(s)	444, 671
BfaI	CTAG	2 cut(s)	387, 723
BisI	GCNGC	2 cut(s)	657, 814
BlsI	GCNGC	2 cut(s)	658, 815
Bme1390I	CCNGG	3 cut(s)	348, 582, 583
Bme18I	GGWCC	1 cut(s)	179
BmeT110I	CYCGRG	1 cut(s)	581
BmgT120I	GGNCC	2 cut(s)	179, 637
BmiI	GGNNCC	2 cut(s)	579, 638
BmrFI	CCNGG	3 cut(s)	348, 582, 583
BmsI	GCATC	2 cut(s)	262, 643
BpmI	CTGGAG	1 cut(s)	369
Bpu10I	CCTNAGC	1 cut(s)	287
BpuMI	CCSGG	2 cut(s)	582, 583
BsaBI	GATNNNNATC	1 cut(s)	495
BsaHI	GRCGYC	1 cut(s)	437
BsaI	GGTCTC	1 cut(s)	671
BsaJI	CCNNGG	6 cut(s)	34, 120, 153, 346, 504, 581
BsaWI	WCCGGW	1 cut(s)	479
Bsc4I	CCNNNNNNNGG	2 cut(s)	352, 633
Bse21I	CCTNAGG	1 cut(s)	711
Bse3DI	GCAATG	2 cut(s)	442, 519
Bse8I	GATNNNNATC	1 cut(s)	495
BseBI	CCWGG	1 cut(s)	348
BseDI	CCNNGG	6 cut(s)	34, 120, 153, 346, 504, 581
BseGI	GGATG	3 cut(s)	24, 277, 397
BseJI	GATNNNNATC	1 cut(s)	495
BseLI	CCNNNNNNNGG	2 cut(s)	352, 633
BseMI	GCAATG	2 cut(s)	442, 519
BseMII	CTCAG	1 cut(s)	179
BseXI	GCAGC	1 cut(s)	668
BshFI	GGCC	3 cut(s)	125, 626, 639
BsiHKCI	CYCGRG	1 cut(s)	581
BsiSI	CCGG	2 cut(s)	480, 582
BslFI	GGGAC	2 cut(s)	93, 448
BslI	CCNNNNNNNGG	2 cut(s)	352, 633
BsmAI	GTCTC	2 cut(s)	444, 671
BsmBI	CGTCTC	1 cut(s)	444
BsmFI	GGGAC	2 cut(s)	93, 448
BsmI	GAATGC	2 cut(s)	198, 793
BsnI	GGCC	3 cut(s)	125, 626, 639
Bso31I	GGTCTC	1 cut(s)	671
BsoBI	CYCGRG	1 cut(s)	581
Bsp143I	GATC	6 cut(s)	30, 39, 496, 577, 768, 798
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	2 cut(s)	158, 404
BspANI	GGCC	3 cut(s)	125, 626, 639
BspCNI	CTCAG	1 cut(s)	180
BspLI	GGNNCC	2 cut(s)	579, 638
BspPI	GGATC	6 cut(s)	25, 47, 491, 572, 585, 776
BspQI	GCTCTTC	2 cut(s)	454, 666
BspTNI	GGTCTC	1 cut(s)	671
BsrDI	GCAATG	2 cut(s)	442, 519
BssECI	CCNNGG	6 cut(s)	34, 120, 153, 346, 504, 581
BssMI	GATC	6 cut(s)	30, 39, 496, 577, 768, 798
BssNI	GRCGYC	1 cut(s)	437
BssSI	CACGAG	1 cut(s)	566
BssT1I	CCWWGG	3 cut(s)	34, 153, 504
Bst2BI	CACGAG	1 cut(s)	566
Bst2UI	CCWGG	1 cut(s)	348
Bst4CI	ACNGT	3 cut(s)	230, 464, 674
Bst6I	CTCTTC	2 cut(s)	454, 666
BstACI	GRCGYC	1 cut(s)	437
BstC8I	GCNNGC	2 cut(s)	343, 545
BstDEI	CTNAG	4 cut(s)	188, 287, 591, 711
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	3 cut(s)	24, 277, 397
BstKTI	GATC	6 cut(s)	33, 42, 499, 580, 771, 801
BstMAI	GTCTC	2 cut(s)	444, 671
BstMBI	GATC	6 cut(s)	30, 39, 496, 577, 768, 798
BstMWI	GCNNNNNNNGC	2 cut(s)	193, 383
BstNI	CCWGG	1 cut(s)	348
BstNSI	RCATGY	1 cut(s)	345
BstSCI	CCNGG	3 cut(s)	346, 580, 581
BstV1I	GCAGC	1 cut(s)	668
BstX2I	RGATCY	1 cut(s)	577
BstYI	RGATCY	1 cut(s)	577
Bsu36I	CCTNAGG	1 cut(s)	711
BsuRI	GGCC	3 cut(s)	125, 626, 639
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	3 cut(s)	24, 277, 397
BtsIMutI	CAGTG	2 cut(s)	240, 679
Cac8I	GCNNGC	2 cut(s)	343, 545
CaiI	CAGNNNCTG	1 cut(s)	82
Cfr13I	GGNCC	2 cut(s)	179, 637
Cfr9I	CCCGGG	1 cut(s)	581
Csp6I	GTAC	1 cut(s)	414
CspCI	CAANNNNNGTGG	2 cut(s)	549, 584
CviAII	CATG	7 cut(s)	108, 154, 203, 342, 360, 417, 701
CviQI	GTAC	1 cut(s)	414
DdeI	CTNAG	4 cut(s)	188, 287, 591, 711
DpnI	GATC	6 cut(s)	32, 41, 498, 579, 770, 800
DpnII	GATC	6 cut(s)	30, 39, 496, 577, 768, 798
EaeI	YGGCCR	1 cut(s)	624
Eam1104I	CTCTTC	2 cut(s)	454, 666
EarI	CTCTTC	2 cut(s)	454, 666
Eco130I	CCWWGG	3 cut(s)	34, 153, 504
Eco31I	GGTCTC	1 cut(s)	671
Eco47I	GGWCC	1 cut(s)	179
Eco81I	CCTNAGG	1 cut(s)	711
Eco88I	CYCGRG	1 cut(s)	581
EcoO109I	RGGNCCY	1 cut(s)	637
EcoRI	GAATTC	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	346
EcoT14I	CCWWGG	3 cut(s)	34, 153, 504
EcoT22I	ATGCAT	1 cut(s)	198
ErhI	CCWWGG	3 cut(s)	34, 153, 504
Esp3I	CGTCTC	1 cut(s)	444
FaeI	CATG	7 cut(s)	111, 157, 206, 345, 363, 420, 704
FalI	AAGNNNNNCTT	1 cut(s)	37
FaqI	GGGAC	2 cut(s)	93, 448
FatI	CATG	7 cut(s)	107, 153, 202, 341, 359, 416, 700
Fnu4HI	GCNGC	2 cut(s)	657, 814
FokI	GGATG	3 cut(s)	11, 284, 404
Fsp4HI	GCNGC	2 cut(s)	657, 814
FspBI	CTAG	2 cut(s)	387, 723
GluI	GCNGC	2 cut(s)	657, 814
GsuI	CTGGAG	1 cut(s)	369
HaeIII	GGCC	3 cut(s)	125, 626, 639
HapII	CCGG	2 cut(s)	480, 582
Hin1I	GRCGYC	1 cut(s)	437
Hin1II	CATG	7 cut(s)	111, 157, 206, 345, 363, 420, 704
HindIII	AAGCTT	2 cut(s)	14, 684
HpaII	CCGG	2 cut(s)	480, 582
HphI	GGTGA	1 cut(s)	469
Hpy188I	TCNGA	3 cut(s)	367, 652, 773
Hpy188III	TCNNGA	5 cut(s)	28, 133, 665, 730, 802
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	5 cut(s)	130, 177, 302, 463, 727
HpyCH4III	ACNGT	3 cut(s)	230, 464, 674
HpyCH4IV	ACGT	3 cut(s)	437, 603, 690
HpyF10VI	GCNNNNNNNGC	2 cut(s)	193, 383
HpyF3I	CTNAG	4 cut(s)	188, 287, 591, 711
HpySE526I	ACGT	3 cut(s)	437, 603, 690
Hsp92I	GRCGYC	1 cut(s)	437
Hsp92II	CATG	7 cut(s)	111, 157, 206, 345, 363, 420, 704
Kzo9I	GATC	6 cut(s)	30, 39, 496, 577, 768, 798
LguI	GCTCTTC	2 cut(s)	454, 666
Lsp1109I	GCAGC	1 cut(s)	668
LweI	GCATC	2 cut(s)	262, 643
MaeI	CTAG	2 cut(s)	387, 723
MaeII	ACGT	3 cut(s)	437, 603, 690
MaeIII	GTNAC	1 cut(s)	422
MalI	GATC	6 cut(s)	32, 41, 498, 579, 770, 800
MboI	GATC	6 cut(s)	30, 39, 496, 577, 768, 798
MboII	GAAGA	4 cut(s)	13, 240, 441, 653
MflI	RGATCY	1 cut(s)	577
MlsI	TGGCCA	1 cut(s)	626
MluCI	AATT	3 cut(s)	244, 276, 823
MluNI	TGGCCA	1 cut(s)	626
MnlI	CCTC	4 cut(s)	115, 290, 650, 747
Mox20I	TGGCCA	1 cut(s)	626
Mph1103I	ATGCAT	1 cut(s)	198
MscI	TGGCCA	1 cut(s)	626
MseI	TTAA	4 cut(s)	321, 693, 822, 826
MslI	CAYNNNNRTG	1 cut(s)	201
Msp20I	TGGCCA	1 cut(s)	626
MspI	CCGG	2 cut(s)	480, 582
MspR9I	CCNGG	3 cut(s)	348, 582, 583
Mva1269I	GAATGC	2 cut(s)	198, 793
MvaI	CCWGG	1 cut(s)	348
MwoI	GCNNNNNNNGC	2 cut(s)	193, 383
NciI	CCSGG	2 cut(s)	582, 583
NcoI	CCATGG	1 cut(s)	153
NdeII	GATC	6 cut(s)	30, 39, 496, 577, 768, 798
NlaIII	CATG	7 cut(s)	111, 157, 206, 345, 363, 420, 704
NlaIV	GGNNCC	2 cut(s)	579, 638
NmeAIII	GCCGAG	1 cut(s)	145
NmuCI	GTSAC	1 cut(s)	422
NsiI	ATGCAT	1 cut(s)	198
NspI	RCATGY	1 cut(s)	345
PacI	TTAATTAA	1 cut(s)	826
PaeI	GCATGC	1 cut(s)	345
PciSI	GCTCTTC	2 cut(s)	454, 666
PctI	GAATGC	2 cut(s)	198, 793
PkrI	GCNGC	2 cut(s)	658, 815
PshBI	ATTAAT	1 cut(s)	822
Psp6I	CCWGG	1 cut(s)	346
PspGI	CCWGG	1 cut(s)	346
PspN4I	GGNNCC	2 cut(s)	579, 638
PspPI	GGNCC	2 cut(s)	179, 637
PstNI	CAGNNNCTG	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	577
RsaI	GTAC	1 cut(s)	415
RsaNI	GTAC	1 cut(s)	414
RseI	CAYNNNNRTG	1 cut(s)	201
SapI	GCTCTTC	2 cut(s)	454, 666
SaqAI	TTAA	4 cut(s)	321, 693, 822, 826
SatI	GCNGC	2 cut(s)	657, 814
Sau3AI	GATC	6 cut(s)	30, 39, 496, 577, 768, 798
Sau96I	GGNCC	2 cut(s)	179, 637
ScrFI	CCNGG	3 cut(s)	348, 582, 583
SfaNI	GCATC	2 cut(s)	262, 643
SinI	GGWCC	1 cut(s)	179
SmaI	CCCGGG	1 cut(s)	583
SmiMI	CAYNNNNRTG	1 cut(s)	201
SphI	GCATGC	1 cut(s)	345
Sse9I	AATT	3 cut(s)	244, 276, 823
SsiI	CCGC	2 cut(s)	158, 404
SspMI	CTAG	2 cut(s)	387, 723
StyD4I	CCNGG	3 cut(s)	346, 580, 581
StyI	CCWWGG	3 cut(s)	34, 153, 504
TaaI	ACNGT	3 cut(s)	230, 464, 674
TaiI	ACGT	3 cut(s)	440, 606, 693
TaqI	TCGA	2 cut(s)	295, 312
TasI	AATT	3 cut(s)	244, 276, 823
TatI	WGTACW	1 cut(s)	413
Tru1I	TTAA	4 cut(s)	321, 693, 822, 826
Tru9I	TTAA	4 cut(s)	321, 693, 822, 826
TscAI	CASTG	2 cut(s)	240, 679
TseFI	GTSAC	1 cut(s)	422
TseI	GCWGC	2 cut(s)	656, 813
Tsp45I	GTSAC	1 cut(s)	422
TspDTI	ATGAA	2 cut(s)	13, 348
TspMI	CCCGGG	1 cut(s)	581
TspRI	CASTG	2 cut(s)	240, 679
VpaK11BI	GGWCC	1 cut(s)	179
VspI	ATTAAT	1 cut(s)	822
XapI	RAATTY	1 cut(s)	244
XceI	RCATGY	1 cut(s)	345
XmaI	CCCGGG	1 cut(s)	581
XspI	CTAG	2 cut(s)	387, 723
ZraI	GACGTC	1 cut(s)	438
Zsp2I	ATGCAT	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.