FvH4_3g02700

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0010695
Physical Location & Seq
Forward (+)
1378211 .. 1380130
1920 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g02700.t1

Sequence Viewer

Length: 990 bp
ATGGCTGCTACTTCAAAGCTCATCTTCCTCCTGATCCAAGGGATCGTTCTGCTTTCTGTTCTTGACTGTGCAAATGCACAGGGACTGAAAGTAGGGTTCTATGCGAAGTCGTGCCCGGAAGCTGAGGCCATAGTGAAGAAGGTTATCGCTCAAACCTTGTCGGTAGCACCTTCACTTGGTGGTCCTTTGCTGAGAATGCATTTCCATGATTGCTTTGTCAGGGGTTGCGACGGTTCAGTGCTACTGAATTCTTCATCAAACCAAGCCGAGAAGGATGCAATTCCAAACCTAAGTCTTCGAGGGTATGGAATCATTGACAGAGTCAAGTCTGCTTTGGAGAAAGCATGCCCTGGAGTGGTTTCATGTTCTGACATCTTAGCCGTTGTAGCTAGAGATGTCGTCGTCGCGGACATGGGAGTACATTGGGATGTTGAAACTGGACGAAGAGATGGTAATGTATCAAACATGATAGATGCCTTGCGAAATCTCCCAGCACCTACTTCAAACATCTCTTCATTAAAATCAAGCTTTGCATCAAAGGGTCTAAGCGCTAAAGATCTTGTAGTACTATCAGGGAGTCACACCATCGGGACATCTCACTGCTCTTCCTTCACCAACCGTCTTTATAACTTCACCGGAAAGAACGTAAACGATACCGATCCCACCTTGGATAGCAACTACATTGCAAAGTTGAAGATGAAATGCAAGCCCAACGACCAAACTACTCTCGTTGAGATGGATCCTGGGAGTTTCAAGACATTTGACGGTTCTTACTATACTCTTGTGGCCAAGAGAAGGGGTCTCTTTCAGTCAGATGCAGCTCTTCTTGATGACAGTGAAACCAAAGCTTACGTGACAAGCCATGCCGTACCAAAGGGAGAAGCTAGTTTCTTGAAGGATTTTGGTGTTTCAATGGTGAACATGGGAAGGATCGGAGTTCTCACGGGGAATGCAGGAGAGATCAGGAAAGTGTGCAGCAAGATCAATTAG

Protein Analysis

330

Amino Acids

35.12

Weight (kDa)

8.65

Isoelectric Point (pI)

28.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 45 - 289 5.1e-83 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 627
AccII CGCG 1 cut(s) 407
AciI CCGC 1 cut(s) 407
AclWI GGATC 6 cut(s) 28, 50, 653, 734, 747, 938
AcoI YGGCCR 1 cut(s) 786
AcsI RAATTY 1 cut(s) 247
AdeI CACNNNGTG 1 cut(s) 179
AfaI GTAC 3 cut(s) 420, 567, 870
AfeI AGCGCT 1 cut(s) 550
AfiI CCNNNNNNNGG 3 cut(s) 176, 355, 795
AgsI TTSAA 7 cut(s) 15, 434, 504, 694, 754, 895, 912
AjnI CCWGG 2 cut(s) 349, 742
AjuI GAANNNNNNNTTGG 2 cut(s) 30, 62
AluBI AGCT 7 cut(s) 19, 122, 389, 528, 821, 848, 884
AluI AGCT 7 cut(s) 19, 122, 389, 528, 821, 848, 884
Alw26I GTCTC 1 cut(s) 806
AlwI GGATC 6 cut(s) 28, 50, 653, 734, 747, 938
AlwNI CAGNNNCTG 1 cut(s) 85
Aor51HI AGCGCT 1 cut(s) 550
AoxI GGCC 2 cut(s) 126, 786
ApeKI GCWGC 3 cut(s) 5, 818, 975
ApoI RAATTY 1 cut(s) 247
AspLEI GCGC 1 cut(s) 551
AspS9I GGNCC 1 cut(s) 182
AsuC2I CCSGG 1 cut(s) 116
AsuHPI GGTGA 3 cut(s) 604, 625, 928
AvaII GGWCC 1 cut(s) 182
BaeGI GKGCMC 1 cut(s) 116
BalI TGGCCA 1 cut(s) 788
BamHI GGATCC 1 cut(s) 739
BbsI GAAGAC 1 cut(s) 287
BbvCI CCTCAGC 1 cut(s) 123
BbvI GCAGC 1 cut(s) 830
BccI CCATC 3 cut(s) 443, 593, 730
BceAI ACGGC 2 cut(s) 365, 851
BcgI CGANNNNNNTGC 2 cut(s) 257, 291
BciT130I CCWGG 2 cut(s) 351, 744
BcnI CCSGG 1 cut(s) 116
BcoDI GTCTC 1 cut(s) 806
BfaI CTAG 2 cut(s) 390, 885
BfoI RGCGCY 1 cut(s) 552
BglII AGATCT 1 cut(s) 556
BisI GCNGC 3 cut(s) 6, 819, 976
BlsI GCNGC 3 cut(s) 7, 820, 977
BmcAI AGTACT 1 cut(s) 567
Bme1390I CCNGG 3 cut(s) 116, 351, 744
Bme18I GGWCC 1 cut(s) 182
BmgT120I GGNCC 1 cut(s) 182
BmiI GGNNCC 1 cut(s) 741
BmrFI CCNGG 3 cut(s) 116, 351, 744
BmsI GCATC 4 cut(s) 265, 463, 542, 805
BpiI GAAGAC 1 cut(s) 287
BpmI CTGGAG 1 cut(s) 372
Bpu10I CCTNAGC 1 cut(s) 123
BpuMI CCSGG 1 cut(s) 116
BsaAI YACGTR 1 cut(s) 853
BsaBI GATNNNNATC 1 cut(s) 657
BsaI GGTCTC 1 cut(s) 806
BsaJI CCNNGG 4 cut(s) 37, 349, 666, 743
BsaWI WCCGGW 1 cut(s) 635
Bsc4I CCNNNNNNNGG 3 cut(s) 176, 355, 795
Bse1I ACTGG 1 cut(s) 442
Bse3DI GCAATG 1 cut(s) 681
Bse8I GATNNNNATC 1 cut(s) 657
BseBI CCWGG 2 cut(s) 351, 744
BseDI CCNNGG 4 cut(s) 37, 349, 666, 743
BseGI GGATG 2 cut(s) 280, 433
BseJI GATNNNNATC 1 cut(s) 657
BseLI CCNNNNNNNGG 3 cut(s) 176, 355, 795
BseMI GCAATG 1 cut(s) 681
BseMII CTCAG 2 cut(s) 114, 182
BseNI ACTGG 1 cut(s) 442
BseSI GKGCMC 1 cut(s) 116
BseXI GCAGC 1 cut(s) 830
BseYI CCCAGC 1 cut(s) 490
Bsh1236I CGCG 1 cut(s) 407
BshFI GGCC 2 cut(s) 128, 788
BsiSI CCGG 2 cut(s) 116, 636
BslFI GGGAC 2 cut(s) 96, 604
BslI CCNNNNNNNGG 3 cut(s) 176, 355, 795
BsmAI GTCTC 1 cut(s) 806
BsmFI GGGAC 2 cut(s) 96, 604
BsmI GAATGC 2 cut(s) 201, 955
BsnI GGCC 2 cut(s) 128, 788
Bso31I GGTCTC 1 cut(s) 806
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 8 cut(s) 33, 42, 556, 658, 739, 930, 960, 981
BspACI CCGC 1 cut(s) 407
BspANI GGCC 2 cut(s) 128, 788
BspCNI CTCAG 2 cut(s) 115, 183
BspFNI CGCG 1 cut(s) 407
BspLI GGNNCC 1 cut(s) 741
BspPI GGATC 6 cut(s) 28, 50, 653, 734, 747, 938
BspQI GCTCTTC 2 cut(s) 610, 828
BspTNI GGTCTC 1 cut(s) 806
BsrDI GCAATG 1 cut(s) 681
BsrI ACTGG 1 cut(s) 442
BssECI CCNNGG 4 cut(s) 37, 349, 666, 743
BssMI GATC 8 cut(s) 33, 42, 556, 658, 739, 930, 960, 981
BssT1I CCWWGG 2 cut(s) 37, 666
Bst2UI CCWGG 2 cut(s) 351, 744
Bst4CI ACNGT 5 cut(s) 68, 233, 620, 767, 836
Bst6I CTCTTC 4 cut(s) 439, 517, 610, 828
BstBAI YACGTR 1 cut(s) 853
BstC8I GCNNGC 2 cut(s) 346, 707
BstDEI CTNAG 5 cut(s) 123, 191, 290, 376, 545
BstF5I GGATG 2 cut(s) 280, 433
BstFNI CGCG 1 cut(s) 407
BstH2I RGCGCY 1 cut(s) 552
BstHHI GCGC 1 cut(s) 551
BstKTI GATC 8 cut(s) 36, 45, 559, 661, 742, 933, 963, 984
BstMAI GTCTC 1 cut(s) 806
BstMBI GATC 8 cut(s) 33, 42, 556, 658, 739, 930, 960, 981
BstMWI GCNNNNNNNGC 2 cut(s) 196, 386
BstNI CCWGG 2 cut(s) 351, 744
BstNSI RCATGY 1 cut(s) 348
BstSCI CCNGG 3 cut(s) 114, 349, 742
BstSLI GKGCMC 1 cut(s) 116
BstUI CGCG 1 cut(s) 407
BstV1I GCAGC 1 cut(s) 830
BstV2I GAAGAC 1 cut(s) 287
BstX2I RGATCY 2 cut(s) 556, 739
BstYI RGATCY 2 cut(s) 556, 739
BsuRI GGCC 2 cut(s) 128, 788
BtsCI GGATG 2 cut(s) 280, 433
BtsI GCAGTG 1 cut(s) 598
BtsIMutI CAGTG 3 cut(s) 243, 598, 841
Cac8I GCNNGC 2 cut(s) 346, 707
CaiI CAGNNNCTG 1 cut(s) 85
CfoI GCGC 1 cut(s) 551
Cfr13I GGNCC 1 cut(s) 182
Csp6I GTAC 3 cut(s) 419, 566, 869
CviAII CATG 7 cut(s) 206, 345, 363, 412, 466, 863, 922
CviQI GTAC 3 cut(s) 419, 566, 869
DdeI CTNAG 5 cut(s) 123, 191, 290, 376, 545
DpnI GATC 8 cut(s) 35, 44, 558, 660, 741, 932, 962, 983
DpnII GATC 8 cut(s) 33, 42, 556, 658, 739, 930, 960, 981
DraIII CACNNNGTG 1 cut(s) 179
EaeI YGGCCR 1 cut(s) 786
Eam1104I CTCTTC 4 cut(s) 439, 517, 610, 828
EarI CTCTTC 4 cut(s) 439, 517, 610, 828
Eco130I CCWWGG 2 cut(s) 37, 666
Eco31I GGTCTC 1 cut(s) 806
Eco47I GGWCC 1 cut(s) 182
Eco47III AGCGCT 1 cut(s) 550
EcoRI GAATTC 1 cut(s) 247
EcoRII CCWGG 2 cut(s) 349, 742
EcoT14I CCWWGG 2 cut(s) 37, 666
EcoT22I ATGCAT 1 cut(s) 201
ErhI CCWWGG 2 cut(s) 37, 666
FaeI CATG 7 cut(s) 209, 348, 366, 415, 469, 866, 925
FalI AAGNNNNNCTT 2 cut(s) 8, 40
FaqI GGGAC 2 cut(s) 96, 604
FatI CATG 7 cut(s) 205, 344, 362, 411, 465, 862, 921
Fnu4HI GCNGC 3 cut(s) 6, 819, 976
FokI GGATG 2 cut(s) 287, 440
Fsp4HI GCNGC 3 cut(s) 6, 819, 976
FspBI CTAG 2 cut(s) 390, 885
GlaI GCGC 1 cut(s) 550
GluI GCNGC 3 cut(s) 6, 819, 976
GsaI CCCAGC 1 cut(s) 494
GsuI CTGGAG 1 cut(s) 372
HaeII RGCGCY 1 cut(s) 552
HaeIII GGCC 2 cut(s) 128, 788
HapII CCGG 2 cut(s) 116, 636
HhaI GCGC 1 cut(s) 551
Hin1II CATG 7 cut(s) 209, 348, 366, 415, 469, 866, 925
Hin6I GCGC 1 cut(s) 549
HinP1I GCGC 1 cut(s) 549
HindIII AAGCTT 2 cut(s) 526, 846
HinfI GANTC 3 cut(s) 309, 321, 577
HpaII CCGG 2 cut(s) 116, 636
HphI GGTGA 3 cut(s) 604, 625, 928
Hpy166II GTNNAC 2 cut(s) 649, 919
Hpy188I TCNGA 3 cut(s) 370, 814, 935
Hpy188III TCNNGA 7 cut(s) 31, 62, 589, 754, 827, 892, 964
Hpy8I GTNNAC 2 cut(s) 649, 919
Hpy99I CGWCG 3 cut(s) 233, 404, 407
HpyAV CCTTC 7 cut(s) 133, 180, 265, 619, 789, 889, 921
HpyCH4III ACNGT 5 cut(s) 68, 233, 620, 767, 836
HpyCH4IV ACGT 2 cut(s) 645, 852
HpyF10VI GCNNNNNNNGC 2 cut(s) 196, 386
HpyF3I CTNAG 5 cut(s) 123, 191, 290, 376, 545
HpySE526I ACGT 2 cut(s) 645, 852
Hsp92II CATG 7 cut(s) 209, 348, 366, 415, 469, 866, 925
HspAI GCGC 1 cut(s) 549
Kzo9I GATC 8 cut(s) 33, 42, 556, 658, 739, 930, 960, 981
LguI GCTCTTC 2 cut(s) 610, 828
Lsp1109I GCAGC 1 cut(s) 830
LweI GCATC 4 cut(s) 265, 463, 542, 805
MaeI CTAG 2 cut(s) 390, 885
MaeII ACGT 2 cut(s) 645, 852
MaeIII GTNAC 2 cut(s) 578, 853
MalI GATC 8 cut(s) 35, 44, 558, 660, 741, 932, 962, 983
MboI GATC 8 cut(s) 33, 42, 556, 658, 739, 930, 960, 981
MboII GAAGA 9 cut(s) 16, 148, 243, 287, 456, 504, 597, 706, 815
MflI RGATCY 2 cut(s) 556, 739
MhlI GDGCHC 1 cut(s) 116
MlsI TGGCCA 1 cut(s) 788
MluCI AATT 3 cut(s) 247, 279, 985
MluNI TGGCCA 1 cut(s) 788
MlyI GAGTC 2 cut(s) 330, 586
MnlI CCTC 3 cut(s) 38, 118, 293
Mox20I TGGCCA 1 cut(s) 788
Mph1103I ATGCAT 1 cut(s) 201
MscI TGGCCA 1 cut(s) 788
MseI TTAA 1 cut(s) 518
MslI CAYNNNNRTG 2 cut(s) 204, 426
Msp20I TGGCCA 1 cut(s) 788
MspI CCGG 2 cut(s) 116, 636
MspR9I CCNGG 3 cut(s) 116, 351, 744
Mva1269I GAATGC 2 cut(s) 201, 955
MvaI CCWGG 2 cut(s) 351, 744
MvnI CGCG 1 cut(s) 407
MwoI GCNNNNNNNGC 2 cut(s) 196, 386
NciI CCSGG 1 cut(s) 116
NdeII GATC 8 cut(s) 33, 42, 556, 658, 739, 930, 960, 981
NlaIII CATG 7 cut(s) 209, 348, 366, 415, 469, 866, 925
NlaIV GGNNCC 1 cut(s) 741
NmeAIII GCCGAG 1 cut(s) 292
NmuCI GTSAC 2 cut(s) 578, 853
NsiI ATGCAT 1 cut(s) 201
NspI RCATGY 1 cut(s) 348
PaeI GCATGC 1 cut(s) 348
PciSI GCTCTTC 2 cut(s) 610, 828
PctI GAATGC 2 cut(s) 201, 955
PfeI GAWTC 1 cut(s) 309
PflFI GACNNNGTC 1 cut(s) 320
PkrI GCNGC 3 cut(s) 7, 820, 977
PleI GAGTC 2 cut(s) 329, 585
PpsI GAGTC 2 cut(s) 329, 585
Ppu21I YACGTR 1 cut(s) 853
PsiI TTATAA 1 cut(s) 627
Psp6I CCWGG 2 cut(s) 349, 742
PspFI CCCAGC 1 cut(s) 490
PspGI CCWGG 2 cut(s) 349, 742
PspN4I GGNNCC 1 cut(s) 741
PspPI GGNCC 1 cut(s) 182
PstNI CAGNNNCTG 1 cut(s) 85
PsuI RGATCY 2 cut(s) 556, 739
PsyI GACNNNGTC 1 cut(s) 320
RsaI GTAC 3 cut(s) 420, 567, 870
RsaNI GTAC 3 cut(s) 419, 566, 869
RseI CAYNNNNRTG 2 cut(s) 204, 426
SapI GCTCTTC 2 cut(s) 610, 828
SaqAI TTAA 1 cut(s) 518
SatI GCNGC 3 cut(s) 6, 819, 976
Sau3AI GATC 8 cut(s) 33, 42, 556, 658, 739, 930, 960, 981
Sau96I GGNCC 1 cut(s) 182
ScaI AGTACT 1 cut(s) 567
SchI GAGTC 2 cut(s) 330, 586
ScrFI CCNGG 3 cut(s) 116, 351, 744
SduI GDGCHC 1 cut(s) 116
SfaNI GCATC 4 cut(s) 265, 463, 542, 805
SinI GGWCC 1 cut(s) 182
SmiMI CAYNNNNRTG 2 cut(s) 204, 426
SphI GCATGC 1 cut(s) 348
Sse9I AATT 3 cut(s) 247, 279, 985
SsiI CCGC 1 cut(s) 407
SspMI CTAG 2 cut(s) 390, 885
StyD4I CCNGG 3 cut(s) 114, 349, 742
StyI CCWWGG 2 cut(s) 37, 666
TaaI ACNGT 5 cut(s) 68, 233, 620, 767, 836
TaiI ACGT 2 cut(s) 648, 855
TaqI TCGA 1 cut(s) 298
TasI AATT 3 cut(s) 247, 279, 985
TatI WGTACW 2 cut(s) 418, 565
TfiI GAWTC 1 cut(s) 309
Tru1I TTAA 1 cut(s) 518
Tru9I TTAA 1 cut(s) 518
TscAI CASTG 3 cut(s) 243, 605, 841
TseFI GTSAC 2 cut(s) 578, 853
TseI GCWGC 3 cut(s) 5, 818, 975
Tsp45I GTSAC 2 cut(s) 578, 853
TspDTI ATGAA 4 cut(s) 243, 351, 504, 713
TspRI CASTG 3 cut(s) 243, 605, 841
Tth111I GACNNNGTC 1 cut(s) 320
VpaK11BI GGWCC 1 cut(s) 182
XapI RAATTY 1 cut(s) 247
XceI RCATGY 1 cut(s) 348
XspI CTAG 2 cut(s) 390, 885
ZrmI AGTACT 1 cut(s) 567
Zsp2I ATGCAT 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.