Rorug04G0409600

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0010695
Physical Location & Seq
Forward (+)
57218018 .. 57219034
1017 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0409600.1

Sequence Viewer

Length: 561 bp
ATGTTTATGAAAACACGAGCAAAAAAGACAGAGAATAATGAAGGCCAACAAGTTGAGACTTTTGATGAGGAGGCTGCTGCTATTATAAGTCAATTCAATGATTATTTGGAGGAGAGGCCTGAAGATGAAGAAGATGATTCATTTCGAGAGGAGGTATTTACTAAAGTGATGGGAGAAGATACACATGGACGTGTCCGCATGTACGGGACAGGAGTAACTCCATCTCAAATATTTGGTCAAACTTCGACAACTTCTGAAATTAATGAAAAAGGAACATTGGAGGACATGGAAAGAAACTATGAGTCCAAGCTAAATGATCTTAAAAGTGGCTATGAATCTCAATTGGGAGAGATGAAATCAAAGTATGATGATATGAAATCAAAGTATGATGATGTATTGTCACGATTGGATCTTTTAATGGCTCATGTGGGCATCCAAGTGAACTCAAGTGGCACTAGAAGTGATCAAGTCAGGGGTGGCCTATTATTGGGTTATGCAGAAGGATGTGATCAAGATAATTCCATCAATTCATATGCTACTCTGTACTCATTAGATATTTAA

Protein Analysis

186

Amino Acids

21.07

Weight (kDa)

4.42

Isoelectric Point (pI)

38.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 2 - 74 5.2e-07 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 86
AciI CCGC 1 cut(s) 196
AclWI GGATC 1 cut(s) 417
AcuI CTGAAG 1 cut(s) 141
AfaI GTAC 2 cut(s) 203, 545
AfiI CCNNNNNNNGG 1 cut(s) 487
AflIII ACRYGT 1 cut(s) 190
AgsI TTSAA 1 cut(s) 97
AjiI CACGTC 1 cut(s) 191
AluBI AGCT 1 cut(s) 310
AluI AGCT 1 cut(s) 310
Alw26I GTCTC 1 cut(s) 50
AlwI GGATC 1 cut(s) 417
AoxI GGCC 3 cut(s) 43, 116, 478
ApeKI GCWGC 2 cut(s) 74, 77
ArsI GACNNNNNNTTYG 2 cut(s) 220, 252
AseI ATTAAT 1 cut(s) 261
BauI CACGAG 1 cut(s) 15
BbvI GCAGC 2 cut(s) 61, 64
BccI CCATC 3 cut(s) 163, 229, 530
BclI TGATCA 2 cut(s) 463, 508
BcoDI GTCTC 1 cut(s) 50
BfaI CTAG 1 cut(s) 456
BisI GCNGC 2 cut(s) 75, 78
BlsI GCNGC 2 cut(s) 76, 79
BmgBI CACGTC 1 cut(s) 191
BmsI GCATC 1 cut(s) 441
BpuEI CTTGAG 1 cut(s) 430
Bsc4I CCNNNNNNNGG 1 cut(s) 487
BseGI GGATG 2 cut(s) 432, 509
BseLI CCNNNNNNNGG 1 cut(s) 487
BseRI GAGGAG 3 cut(s) 83, 125, 164
BseXI GCAGC 2 cut(s) 61, 64
BshFI GGCC 3 cut(s) 45, 118, 480
BslFI GGGAC 1 cut(s) 220
BslI CCNNNNNNNGG 1 cut(s) 487
BsmAI GTCTC 1 cut(s) 50
BsmFI GGGAC 1 cut(s) 220
BsnI GGCC 3 cut(s) 45, 118, 480
Bsp143I GATC 4 cut(s) 316, 409, 463, 508
BspACI CCGC 1 cut(s) 196
BspANI GGCC 3 cut(s) 45, 118, 480
BspPI GGATC 1 cut(s) 417
BssMI GATC 4 cut(s) 316, 409, 463, 508
BssSI CACGAG 1 cut(s) 15
Bst2BI CACGAG 1 cut(s) 15
BstF5I GGATG 2 cut(s) 432, 509
BstKTI GATC 4 cut(s) 319, 412, 466, 511
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 4 cut(s) 316, 409, 463, 508
BstNSI RCATGY 1 cut(s) 202
BstV1I GCAGC 2 cut(s) 61, 64
BstX2I RGATCY 1 cut(s) 409
BstYI RGATCY 1 cut(s) 409
BsuRI GGCC 3 cut(s) 45, 118, 480
BtrI CACGTC 1 cut(s) 191
BtsCI GGATG 2 cut(s) 432, 509
Csp6I GTAC 2 cut(s) 202, 544
CviAII CATG 4 cut(s) 185, 199, 286, 425
CviJI RGCY 7 cut(s) 45, 74, 118, 310, 330, 422, 480
CviKI_1 RGCY 7 cut(s) 45, 74, 118, 310, 330, 422, 480
CviQI GTAC 2 cut(s) 202, 544
DpnI GATC 4 cut(s) 318, 411, 465, 510
DpnII GATC 4 cut(s) 316, 409, 463, 508
Eco147I AGGCCT 1 cut(s) 118
Eco57I CTGAAG 1 cut(s) 141
FaeI CATG 4 cut(s) 188, 202, 289, 428
FaqI GGGAC 1 cut(s) 220
FatI CATG 4 cut(s) 184, 198, 285, 424
FauNDI CATATG 1 cut(s) 532
FbaI TGATCA 2 cut(s) 463, 508
Fnu4HI GCNGC 2 cut(s) 75, 78
FokI GGATG 2 cut(s) 419, 516
Fsp4HI GCNGC 2 cut(s) 75, 78
FspBI CTAG 1 cut(s) 456
GluI GCNGC 2 cut(s) 75, 78
HaeIII GGCC 3 cut(s) 45, 118, 480
Hin1II CATG 4 cut(s) 188, 202, 289, 428
HinfI GANTC 3 cut(s) 137, 302, 335
Hpy166II GTNNAC 1 cut(s) 442
Hpy188I TCNGA 1 cut(s) 256
Hpy188III TCNNGA 3 cut(s) 146, 402, 512
Hpy8I GTNNAC 1 cut(s) 442
HpyAV CCTTC 2 cut(s) 35, 494
HpyCH4IV ACGT 1 cut(s) 190
HpyCH4V TGCA 1 cut(s) 497
HpySE526I ACGT 1 cut(s) 190
Hsp92II CATG 4 cut(s) 188, 202, 289, 428
Ksp22I TGATCA 2 cut(s) 463, 508
Kzo9I GATC 4 cut(s) 316, 409, 463, 508
LpnPI CCDG 3 cut(s) 132, 195, 457
Lsp1109I GCAGC 2 cut(s) 61, 64
LweI GCATC 1 cut(s) 441
MaeI CTAG 1 cut(s) 456
MaeII ACGT 1 cut(s) 190
MaeIII GTNAC 2 cut(s) 214, 399
MalI GATC 4 cut(s) 318, 411, 465, 510
MboI GATC 4 cut(s) 316, 409, 463, 508
MboII GAAGA 4 cut(s) 134, 140, 143, 188
MfeI CAATTG 1 cut(s) 341
MflI RGATCY 1 cut(s) 409
MluCI AATT 5 cut(s) 92, 258, 341, 517, 526
MlyI GAGTC 1 cut(s) 311
MnlI CCTC 7 cut(s) 61, 64, 103, 108, 142, 145, 274
MseI TTAA 4 cut(s) 261, 321, 416, 559
MslI CAYNNNNRTG 2 cut(s) 189, 437
MunI CAATTG 1 cut(s) 341
NdeI CATATG 1 cut(s) 532
NdeII GATC 4 cut(s) 316, 409, 463, 508
NlaIII CATG 4 cut(s) 188, 202, 289, 428
NmuCI GTSAC 1 cut(s) 399
NspI RCATGY 1 cut(s) 202
PceI AGGCCT 1 cut(s) 118
PfeI GAWTC 2 cut(s) 137, 335
PkrI GCNGC 2 cut(s) 76, 79
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
PshBI ATTAAT 1 cut(s) 261
PsiI TTATAA 1 cut(s) 86
PsuI RGATCY 1 cut(s) 409
RsaI GTAC 2 cut(s) 203, 545
RsaNI GTAC 2 cut(s) 202, 544
RseI CAYNNNNRTG 2 cut(s) 189, 437
SaqAI TTAA 4 cut(s) 261, 321, 416, 559
SatI GCNGC 2 cut(s) 75, 78
Sau3AI GATC 4 cut(s) 316, 409, 463, 508
SchI GAGTC 1 cut(s) 311
SetI ASST 3 cut(s) 156, 193, 312
SfaNI GCATC 1 cut(s) 441
SmiMI CAYNNNNRTG 2 cut(s) 189, 437
SmlI CTYRAG 1 cut(s) 445
SmoI CTYRAG 1 cut(s) 445
Sse9I AATT 5 cut(s) 92, 258, 341, 517, 526
SseBI AGGCCT 1 cut(s) 118
SsiI CCGC 1 cut(s) 196
SspI AATATT 1 cut(s) 231
SspMI CTAG 1 cut(s) 456
StuI AGGCCT 1 cut(s) 118
TaiI ACGT 1 cut(s) 193
TaqI TCGA 2 cut(s) 145, 245
TasI AATT 5 cut(s) 92, 258, 341, 517, 526
TatI WGTACW 1 cut(s) 543
TfiI GAWTC 2 cut(s) 137, 335
Tru1I TTAA 4 cut(s) 261, 321, 416, 559
Tru9I TTAA 4 cut(s) 261, 321, 416, 559
TseFI GTSAC 1 cut(s) 399
TseI GCWGC 2 cut(s) 74, 77
Tsp45I GTSAC 1 cut(s) 399
TspDTI ATGAA 9 cut(s) 23, 54, 129, 141, 279, 348, 368, 389, 519
VspI ATTAAT 1 cut(s) 261
XceI RCATGY 1 cut(s) 202
XspI CTAG 1 cut(s) 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.