AT5G15180

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010695
Physical Location & Seq
Forward (+)
4930425 .. 4932406
1982 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G15180.1

Sequence Viewer

Length: 990 bp
ATGGCTGCTTTGAAGATGACTATCTCTTGTTTCTTGTTTCTTCAAGTAATATATTGCTTGCTCTCTTCATTTGCTCCAACAAATGTGCAAGGATTGAAAGTTGGATTCTACGACAAGGCATGCCCCAAAGCCGAGCTTATTGTCAAAAAGTCTGTCTTCGAGGCTGTGAAGAATGATCGGACAATTGCAGCTCCTTTGCTCAGGATGTTCTTCCACGATTGCTTCGTTAGGGGATGCGAAGGGTCGGTATTGCTAGAGCTAAAGAACAAAAAAGATGAGAAAAACTCAATTCCTAACCTCACCCTTCGAGGATTTGAGATCATAGACAATGTCAAGGCAGCTCTAGAAAAGGAGTGTCCGGGCATTGTTTCTTGCTCTGATGTATTGGCTCTTGTCGCTAGAGACGCAATGGTTGCGCTCAATGGACCGTCGTGGGAGGTTGAAACGGGACGAAGAGACGGTCTGGTTACAAACATCACTGAGGCCTTATTAAACTTACCATCACCATTTAATAATATCAGTAGCCTTATCACTCAATTCCAGTCCAAAGGCCTCGACAAGAAAGACCTCGTTGTGCTTTCAGGTGGGCACACAATTGGGAATGGACATTGTCCACAGATCACAAACCGTCTCTACAACTTCACCGGAAAAGGAGATAGTGACCCGAACTTAGACACGGAATACGCAGTCAAACTCAGAGGAAAATGCAAGCCAACTGATACCACAACGGCTCTAGAAATGGATCCAGGAAGCTTTAAAACGTTCGATGAAAGTTACTTCAAGCTTGTGTCTCAAAGAAGAGGATTGTTTCAATCTGATGCAGCTCTTTTAGACAATCAAGAAACTAAGTCTTATGTTCTCAAGAGTTTGAATAGTGATGGGTCTACTTTCTTTAAAGACTTTGGTGTCTCCATGGTAAAAATGGGTCGGATTGGAGTTTTAACGGGTCAGGTTGGGGAAGTTCGCAAGAAGTGCAGAATGGTTAATTAA

Protein Analysis

329

Amino Acids

36.22

Weight (kDa)

8.71

Isoelectric Point (pI)

31.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 48 - 288 1e-81 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 905
AccI GTMKAC 1 cut(s) 884
AclI AACGTT 1 cut(s) 761
AclWI GGATC 2 cut(s) 737, 750
AgsI TTSAA 7 cut(s) 13, 44, 97, 443, 781, 812, 871
AjnI CCWGG 1 cut(s) 745
AluBI AGCT 7 cut(s) 136, 191, 259, 341, 753, 784, 824
AluI AGCT 7 cut(s) 136, 191, 259, 341, 753, 784, 824
Alw26I GTCTC 5 cut(s) 396, 450, 635, 795, 913
AlwI GGATC 2 cut(s) 737, 750
AoxI GGCC 2 cut(s) 483, 550
ApeKI GCWGC 4 cut(s) 5, 188, 338, 821
ArsI GACNNNNNNTTYG 4 cut(s) 138, 170, 445, 477
AspLEI GCGC 1 cut(s) 418
AspS9I GGNCC 1 cut(s) 425
AsuC2I CCSGG 1 cut(s) 360
AsuHPI GGTGA 3 cut(s) 292, 495, 634
AvaII GGWCC 1 cut(s) 425
BaeGI GKGCMC 1 cut(s) 591
BamHI GGATCC 1 cut(s) 742
BbsI GAAGAC 1 cut(s) 148
BbvI GCAGC 3 cut(s) 200, 350, 833
BccI CCATC 2 cut(s) 508, 872
BceAI ACGGC 1 cut(s) 744
BciT130I CCWGG 1 cut(s) 747
BcnI CCSGG 1 cut(s) 360
BcoDI GTCTC 5 cut(s) 396, 450, 635, 795, 913
BfaI CTAG 4 cut(s) 254, 344, 399, 734
BisI GCNGC 4 cut(s) 6, 189, 339, 822
BlsI GCNGC 4 cut(s) 7, 190, 340, 823
Bme1390I CCNGG 2 cut(s) 360, 747
Bme18I GGWCC 1 cut(s) 425
BmgT120I GGNCC 1 cut(s) 425
BmiI GGNNCC 1 cut(s) 744
BmrFI CCNGG 2 cut(s) 360, 747
BmsI GCATC 2 cut(s) 224, 808
BpiI GAAGAC 1 cut(s) 148
BplI GAGNNNNNCTC 2 cut(s) 269, 301
Bpu10I CCTNAGC 1 cut(s) 200
BpuEI CTTGAG 1 cut(s) 845
BpuMI CCSGG 1 cut(s) 360
BsaBI GATNNNNATC 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 912
BsaWI WCCGGW 1 cut(s) 644
Bse1I ACTGG 1 cut(s) 541
Bse3DI GCAATG 1 cut(s) 414
Bse8I GATNNNNATC 1 cut(s) 20
BseBI CCWGG 1 cut(s) 747
BseDI CCNNGG 1 cut(s) 912
BseGI GGATG 2 cut(s) 210, 239
BseJI GATNNNNATC 1 cut(s) 20
BseMI GCAATG 1 cut(s) 414
BseMII CTCAG 3 cut(s) 214, 471, 709
BseNI ACTGG 1 cut(s) 541
BseSI GKGCMC 1 cut(s) 591
BseXI GCAGC 3 cut(s) 200, 350, 833
BshFI GGCC 2 cut(s) 485, 552
BsiSI CCGG 2 cut(s) 359, 645
BslFI GGGAC 1 cut(s) 462
BsmAI GTCTC 5 cut(s) 396, 450, 635, 795, 913
BsmBI CGTCTC 3 cut(s) 396, 450, 635
BsmFI GGGAC 1 cut(s) 462
BsnI GGCC 2 cut(s) 485, 552
Bsp1286I GDGCHC 1 cut(s) 591
Bsp143I GATC 4 cut(s) 175, 318, 618, 742
Bsp19I CCATGG 1 cut(s) 912
BspANI GGCC 2 cut(s) 485, 552
BspCNI CTCAG 3 cut(s) 213, 472, 708
BspLI GGNNCC 1 cut(s) 744
BspPI GGATC 2 cut(s) 737, 750
BsrDI GCAATG 1 cut(s) 414
BsrI ACTGG 1 cut(s) 541
BssECI CCNNGG 1 cut(s) 912
BssMI GATC 4 cut(s) 175, 318, 618, 742
BssT1I CCWWGG 1 cut(s) 912
Bst2UI CCWGG 1 cut(s) 747
Bst4CI ACNGT 3 cut(s) 429, 461, 629
Bst6I CTCTTC 3 cut(s) 70, 448, 793
BstAPI GCANNNNNTGC 2 cut(s) 413, 972
BstC8I GCNNGC 3 cut(s) 59, 121, 710
BstDEI CTNAG 5 cut(s) 200, 480, 670, 695, 846
BstDSI CCRYGG 1 cut(s) 912
BstF5I GGATG 2 cut(s) 210, 239
BstHHI GCGC 1 cut(s) 418
BstKTI GATC 4 cut(s) 178, 321, 621, 745
BstMAI GTCTC 5 cut(s) 396, 450, 635, 795, 913
BstMBI GATC 4 cut(s) 175, 318, 618, 742
BstMWI GCNNNNNNNGC 4 cut(s) 395, 404, 413, 972
BstNI CCWGG 1 cut(s) 747
BstNSI RCATGY 1 cut(s) 123
BstSCI CCNGG 2 cut(s) 358, 745
BstSLI GKGCMC 1 cut(s) 591
BstV1I GCAGC 3 cut(s) 200, 350, 833
BstV2I GAAGAC 1 cut(s) 148
BstX2I RGATCY 1 cut(s) 742
BstYI RGATCY 1 cut(s) 742
BsuRI GGCC 2 cut(s) 485, 552
BtgI CCRYGG 1 cut(s) 912
BtsCI GGATG 2 cut(s) 210, 239
BtsIMutI CAGTG 1 cut(s) 477
Cac8I GCNNGC 3 cut(s) 59, 121, 710
CfoI GCGC 1 cut(s) 418
Cfr13I GGNCC 1 cut(s) 425
CseI GACGC 1 cut(s) 413
CviAII CATG 2 cut(s) 120, 913
DdeI CTNAG 5 cut(s) 200, 480, 670, 695, 846
DpnI GATC 4 cut(s) 177, 320, 620, 744
DpnII GATC 4 cut(s) 175, 318, 618, 742
DraI TTTAAA 2 cut(s) 757, 895
DrdI GACNNNNNNGTC 1 cut(s) 905
DseDI GACNNNNNNGTC 1 cut(s) 905
Eam1104I CTCTTC 3 cut(s) 70, 448, 793
EarI CTCTTC 3 cut(s) 70, 448, 793
Eco130I CCWWGG 1 cut(s) 912
Eco147I AGGCCT 2 cut(s) 485, 552
Eco47I GGWCC 1 cut(s) 425
EcoRII CCWGG 1 cut(s) 745
EcoT14I CCWWGG 1 cut(s) 912
ErhI CCWWGG 1 cut(s) 912
Esp3I CGTCTC 3 cut(s) 396, 450, 635
FaeI CATG 2 cut(s) 123, 916
FaiI YATR 5 cut(s) 52, 121, 323, 855, 914
FalI AAGNNNNNCTT 4 cut(s) 120, 152, 140, 172
FaqI GGGAC 1 cut(s) 462
FatI CATG 2 cut(s) 119, 912
FblI GTMKAC 1 cut(s) 884
Fnu4HI GCNGC 4 cut(s) 6, 189, 339, 822
FokI GGATG 2 cut(s) 217, 246
Fsp4HI GCNGC 4 cut(s) 6, 189, 339, 822
FspBI CTAG 4 cut(s) 254, 344, 399, 734
GlaI GCGC 1 cut(s) 417
GluI GCNGC 4 cut(s) 6, 189, 339, 822
HaeIII GGCC 2 cut(s) 485, 552
HapII CCGG 2 cut(s) 359, 645
HgaI GACGC 1 cut(s) 413
HhaI GCGC 1 cut(s) 418
Hin1II CATG 2 cut(s) 123, 916
Hin6I GCGC 1 cut(s) 416
HinP1I GCGC 1 cut(s) 416
HindIII AAGCTT 2 cut(s) 751, 782
HinfI GANTC 1 cut(s) 105
HpaII CCGG 2 cut(s) 359, 645
HphI GGTGA 3 cut(s) 292, 495, 634
Hpy166II GTNNAC 2 cut(s) 614, 885
Hpy188I TCNGA 5 cut(s) 180, 379, 698, 817, 930
Hpy188III TCNNGA 5 cut(s) 202, 344, 734, 839, 862
Hpy8I GTNNAC 2 cut(s) 614, 885
Hpy99I CGWCG 1 cut(s) 433
HpyAV CCTTC 2 cut(s) 233, 314
HpyCH4III ACNGT 3 cut(s) 429, 461, 629
HpyCH4IV ACGT 1 cut(s) 761
HpyCH4V TGCA 5 cut(s) 88, 188, 708, 821, 975
HpyF10VI GCNNNNNNNGC 4 cut(s) 395, 404, 413, 972
HpyF3I CTNAG 5 cut(s) 200, 480, 670, 695, 846
HpySE526I ACGT 1 cut(s) 761
Hsp92II CATG 2 cut(s) 123, 916
HspAI GCGC 1 cut(s) 416
Kzo9I GATC 4 cut(s) 175, 318, 618, 742
LmnI GCTCC 2 cut(s) 79, 196
LpnPI CCDG 9 cut(s) 187, 372, 449, 554, 567, 658, 732, 759, 935
Lsp1109I GCAGC 3 cut(s) 200, 350, 833
LweI GCATC 2 cut(s) 224, 808
MaeI CTAG 4 cut(s) 254, 344, 399, 734
MaeII ACGT 1 cut(s) 761
MaeIII GTNAC 3 cut(s) 466, 659, 773
MalI GATC 4 cut(s) 177, 320, 620, 744
MboI GATC 4 cut(s) 175, 318, 618, 742
MboII GAAGA 8 cut(s) 25, 32, 57, 148, 181, 202, 465, 810
MfeI CAATTG 2 cut(s) 183, 594
MflI RGATCY 1 cut(s) 742
MhlI GDGCHC 1 cut(s) 591
MluCI AATT 5 cut(s) 183, 288, 536, 594, 985
MmeI TCCRAC 3 cut(s) 82, 101, 908
MnlI CCTC 9 cut(s) 154, 302, 308, 430, 475, 563, 578, 692, 794
MseI TTAA 7 cut(s) 491, 510, 756, 894, 941, 984, 988
MspI CCGG 2 cut(s) 359, 645
MspR9I CCNGG 2 cut(s) 360, 747
MunI CAATTG 2 cut(s) 183, 594
MvaI CCWGG 1 cut(s) 747
MwoI GCNNNNNNNGC 4 cut(s) 395, 404, 413, 972
NciI CCSGG 1 cut(s) 360
NcoI CCATGG 1 cut(s) 912
NdeII GATC 4 cut(s) 175, 318, 618, 742
NlaIII CATG 2 cut(s) 123, 916
NlaIV GGNNCC 1 cut(s) 744
NmeAIII GCCGAG 1 cut(s) 157
NmuCI GTSAC 1 cut(s) 659
NspI RCATGY 1 cut(s) 123
PacI TTAATTAA 1 cut(s) 988
PaeI GCATGC 1 cut(s) 123
PceI AGGCCT 2 cut(s) 485, 552
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PfeI GAWTC 1 cut(s) 105
PflFI GACNNNGTC 2 cut(s) 329, 609
PfoI TCCNGGA 1 cut(s) 745
PkrI GCNGC 4 cut(s) 7, 190, 340, 823
Psp1406I AACGTT 1 cut(s) 761
Psp6I CCWGG 1 cut(s) 745
PspGI CCWGG 1 cut(s) 745
PspN4I GGNNCC 1 cut(s) 744
PspPI GGNCC 1 cut(s) 425
PsuI RGATCY 1 cut(s) 742
PsyI GACNNNGTC 2 cut(s) 329, 609
SaqAI TTAA 7 cut(s) 491, 510, 756, 894, 941, 984, 988
SatI GCNGC 4 cut(s) 6, 189, 339, 822
Sau3AI GATC 4 cut(s) 175, 318, 618, 742
Sau96I GGNCC 1 cut(s) 425
ScrFI CCNGG 2 cut(s) 360, 747
SduI GDGCHC 1 cut(s) 591
SfaNI GCATC 2 cut(s) 224, 808
SinI GGWCC 1 cut(s) 425
SmlI CTYRAG 1 cut(s) 860
SmoI CTYRAG 1 cut(s) 860
SphI GCATGC 1 cut(s) 123
Sse9I AATT 5 cut(s) 183, 288, 536, 594, 985
SseBI AGGCCT 2 cut(s) 485, 552
SspMI CTAG 4 cut(s) 254, 344, 399, 734
StuI AGGCCT 2 cut(s) 485, 552
StyD4I CCNGG 2 cut(s) 358, 745
StyI CCWWGG 1 cut(s) 912
TaaI ACNGT 3 cut(s) 429, 461, 629
TaiI ACGT 1 cut(s) 764
TaqI TCGA 4 cut(s) 159, 307, 555, 765
TasI AATT 5 cut(s) 183, 288, 536, 594, 985
TfiI GAWTC 1 cut(s) 105
Tru1I TTAA 7 cut(s) 491, 510, 756, 894, 941, 984, 988
Tru9I TTAA 7 cut(s) 491, 510, 756, 894, 941, 984, 988
TscAI CASTG 1 cut(s) 484
TseFI GTSAC 1 cut(s) 659
TseI GCWGC 4 cut(s) 5, 188, 338, 821
Tsp45I GTSAC 1 cut(s) 659
TspDTI ATGAA 2 cut(s) 57, 783
TspGWI ACGGA 1 cut(s) 692
TspRI CASTG 1 cut(s) 484
Tth111I GACNNNGTC 2 cut(s) 329, 609
VpaK11BI GGWCC 1 cut(s) 425
XbaI TCTAGA 2 cut(s) 343, 733
XceI RCATGY 1 cut(s) 123
XcmI CCANNNNNNNNNTGG 1 cut(s) 919
XmiI GTMKAC 1 cut(s) 884
XspI CTAG 4 cut(s) 254, 344, 399, 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.