Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0010695

Physical Location & Seq

Genomic Coordinates Forward (+)

3117355 .. 3118619

Gene Structure 1265 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G003350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGCTACTTCAAAGCTTATCTTCATCCTGATCCAAGGGATCGTTCTGCTTTCTGTCCTTGACTTGGCAAATGCACAAGGACTGAAAGTAGGGTTTTATGCAAAGTCATGCCCGAAAGCCGAGGCCATAGTCAAGAAGGTTATCGCTCAAACCATGGCGGTAGCACCTTCACTCGCTGGTCCTTTGCTCAGAATGCATTTCCATGATTGCTTTGTCAGGGGTTGCGACGGTTCAGTGCTATTGAATTCTTCAACAAACCAAGCCGAAAAGGATGCACCTCCCAACCTAAGTCTTCGAGGGTATGGAGTCATTGACAGTGTTAAGTCTGCTTTGGAAAAAGCTTGTCCTGGAGTAGTTTCATGCTCTGACATCGTAGCGATTGTAGCTAGGGATGTGGTTGTCGCGGACATGGGAGAACACTGGGATGTTGAAACTGGACGAAGAGATGGTAATGTATCAAGCATGACAGATGCCTTGCTCAATCTCCCATCACCTCGTTCAAACATCACTATACTAAAATCAAGCTTTGCACAGAAGGGTCTAAGCGCTAAAGATCTTGTAGTACTATCAGGGAGTCACACCATTGGGACGTCTCATTGCTCTTCCTTCAACAATCGTCTTTACAACTTCACCGGAAATGGCGATACAGATCCCACCTTGGATAACAACTACATTGCAAGGTTGAAGATGAAATGCAAGCCCAACGACCAAACAACTCTCGCTGAGATGGATCCGGGGAGTTTCAAGACATTTGACGTCTCCTATTATACTCTTGTGGCCAAGAGAAGGGGTCTCTTTCAGTCAGATGCAGCTCTTCTTGATGACAGTGAGACCAAAACTTACGTTACAAACCATTCCACACCTAAGGGAAAAGCAAGTTTCTTGAAGGATTTTGGTGTTTCAATGGTGAAAATGGGTAGGATCGGAGTTCTCACGGGGAATGCAGGGGAGATCAGGCGAGTCTGCAGCAAGATTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

326

Amino Acids

35.0

Weight (kDa)

8.93

Isoelectric Point (pI)

31.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	44 - 284	2.1e-82	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010695)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01190 AT5G15180
fragaria_vesca	FvH4_3g02700
prunus_persica	Prupe.4G026700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0004041
rosa_laevigata	RLG00000031198 RLG00000031200
rosa_roxburghii	Rroxscaffold_1G00071930
rosa_rugosa	Rorug04G0409600 Rorug04G0409700
rosa_samantha	Rh5AG037000 Rh5AG037100 Rh5BG036000 Rh5BG036100 Rh5CG039700 Rh5CG039800 Rh5DG035600 Rh5DG035700
rosa_wichuraiana	Rw5G003350 Rw5G003360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	593, 759
AccII	CGCG	1 cut(s)	404
AciI	CCGC	2 cut(s)	158, 404
AclWI	GGATC	6 cut(s)	25, 47, 644, 725, 738, 929
AcoI	YGGCCR	1 cut(s)	777
AcsI	RAATTY	1 cut(s)	244
AcyI	GRCGYC	2 cut(s)	590, 756
AfaI	GTAC	1 cut(s)	564
AfeI	AGCGCT	1 cut(s)	547
AfiI	CCNNNNNNNGG	2 cut(s)	64, 786
AjnI	CCWGG	1 cut(s)	346
AjuI	GAANNNNNNNTTGG	2 cut(s)	27, 59
AluBI	AGCT	5 cut(s)	16, 341, 386, 525, 812
AluI	AGCT	5 cut(s)	16, 341, 386, 525, 812
Alw26I	GTCTC	4 cut(s)	597, 763, 797, 824
AlwI	GGATC	6 cut(s)	25, 47, 644, 725, 738, 929
Aor51HI	AGCGCT	1 cut(s)	547
AoxI	GGCC	2 cut(s)	123, 777
ApeKI	GCWGC	2 cut(s)	809, 966
ApoI	RAATTY	1 cut(s)	244
AseI	ATTAAT	1 cut(s)	975
AspLEI	GCGC	1 cut(s)	548
AspS9I	GGNCC	1 cut(s)	179
AsuC2I	CCSGG	1 cut(s)	735
AsuHPI	GGTGA	3 cut(s)	483, 622, 919
AvaII	GGWCC	1 cut(s)	179
AxyI	CCTNAGG	1 cut(s)	864
BalI	TGGCCA	1 cut(s)	779
BamHI	GGATCC	1 cut(s)	730
BbsI	GAAGAC	1 cut(s)	284
BbvI	GCAGC	1 cut(s)	821
BccI	CCATC	3 cut(s)	440, 496, 721
BcgI	CGANNNNNNTGC	2 cut(s)	254, 288
BciT130I	CCWGG	1 cut(s)	348
BcnI	CCSGG	1 cut(s)	735
BcoDI	GTCTC	4 cut(s)	597, 763, 797, 824
BfaI	CTAG	1 cut(s)	387
BfmI	CTRYAG	1 cut(s)	964
BfoI	RGCGCY	1 cut(s)	549
BglII	AGATCT	1 cut(s)	553
BisI	GCNGC	2 cut(s)	810, 967
BlsI	GCNGC	2 cut(s)	811, 968
BmcAI	AGTACT	1 cut(s)	564
Bme1390I	CCNGG	2 cut(s)	348, 735
Bme18I	GGWCC	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	732
BmrFI	CCNGG	2 cut(s)	348, 735
BmrI	ACTGGG	1 cut(s)	430
BmsI	GCATC	3 cut(s)	262, 460, 796
BmuI	ACTGGG	1 cut(s)	430
BpiI	GAAGAC	1 cut(s)	284
BpmI	CTGGAG	1 cut(s)	369
BpuMI	CCSGG	1 cut(s)	735
BsaBI	GATNNNNATC	1 cut(s)	648
BsaHI	GRCGYC	2 cut(s)	590, 756
BsaI	GGTCTC	2 cut(s)	797, 824
BsaJI	CCNNGG	5 cut(s)	34, 120, 153, 657, 734
BsaWI	WCCGGW	1 cut(s)	632
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 786
Bse1I	ACTGG	2 cut(s)	425, 439
Bse21I	CCTNAGG	1 cut(s)	864
Bse3DI	GCAATG	2 cut(s)	595, 672
Bse8I	GATNNNNATC	1 cut(s)	648
BseBI	CCWGG	1 cut(s)	348
BseDI	CCNNGG	5 cut(s)	34, 120, 153, 657, 734
BseGI	GGATG	4 cut(s)	24, 277, 397, 430
BseJI	GATNNNNATC	1 cut(s)	648
BseLI	CCNNNNNNNGG	2 cut(s)	64, 786
BseMI	GCAATG	2 cut(s)	595, 672
BseMII	CTCAG	2 cut(s)	202, 714
BseNI	ACTGG	2 cut(s)	425, 439
BseXI	GCAGC	1 cut(s)	821
Bsh1236I	CGCG	1 cut(s)	404
BshFI	GGCC	2 cut(s)	125, 779
BsiSI	CCGG	2 cut(s)	633, 734
BslFI	GGGAC	1 cut(s)	601
BslI	CCNNNNNNNGG	2 cut(s)	64, 786
BsmAI	GTCTC	4 cut(s)	597, 763, 797, 824
BsmBI	CGTCTC	2 cut(s)	597, 763
BsmFI	GGGAC	1 cut(s)	601
BsmI	GAATGC	2 cut(s)	198, 946
BsnI	GGCC	2 cut(s)	125, 779
Bso31I	GGTCTC	2 cut(s)	797, 824
Bsp143I	GATC	7 cut(s)	30, 39, 553, 649, 730, 921, 951
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	2 cut(s)	158, 404
BspANI	GGCC	2 cut(s)	125, 779
BspCNI	CTCAG	2 cut(s)	201, 715
BspFNI	CGCG	1 cut(s)	404
BspLI	GGNNCC	1 cut(s)	732
BspMAI	CTGCAG	1 cut(s)	968
BspPI	GGATC	6 cut(s)	25, 47, 644, 725, 738, 929
BspQI	GCTCTTC	2 cut(s)	607, 819
BspTNI	GGTCTC	2 cut(s)	797, 824
BsrDI	GCAATG	2 cut(s)	595, 672
BsrI	ACTGG	2 cut(s)	425, 439
BssECI	CCNNGG	5 cut(s)	34, 120, 153, 657, 734
BssMI	GATC	7 cut(s)	30, 39, 553, 649, 730, 921, 951
BssNI	GRCGYC	2 cut(s)	590, 756
BssT1I	CCWWGG	3 cut(s)	34, 153, 657
Bst2UI	CCWGG	1 cut(s)	348
Bst4CI	ACNGT	3 cut(s)	230, 317, 827
Bst6I	CTCTTC	3 cut(s)	436, 607, 819
BstACI	GRCGYC	2 cut(s)	590, 756
BstC8I	GCNNGC	1 cut(s)	698
BstDEI	CTNAG	5 cut(s)	188, 287, 542, 723, 864
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	4 cut(s)	24, 277, 397, 430
BstFNI	CGCG	1 cut(s)	404
BstH2I	RGCGCY	1 cut(s)	549
BstHHI	GCGC	1 cut(s)	548
BstKTI	GATC	7 cut(s)	33, 42, 556, 652, 733, 924, 954
BstMAI	GTCTC	4 cut(s)	597, 763, 797, 824
BstMBI	GATC	7 cut(s)	30, 39, 553, 649, 730, 921, 951
BstMWI	GCNNNNNNNGC	2 cut(s)	193, 383
BstNI	CCWGG	1 cut(s)	348
BstSCI	CCNGG	2 cut(s)	346, 733
BstSFI	CTRYAG	1 cut(s)	964
BstUI	CGCG	1 cut(s)	404
BstV1I	GCAGC	1 cut(s)	821
BstV2I	GAAGAC	1 cut(s)	284
BstX2I	RGATCY	3 cut(s)	553, 649, 730
BstYI	RGATCY	3 cut(s)	553, 649, 730
Bsu36I	CCTNAGG	1 cut(s)	864
BsuRI	GGCC	2 cut(s)	125, 779
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	4 cut(s)	24, 277, 397, 430
BtsIMutI	CAGTG	4 cut(s)	240, 322, 418, 832
Cac8I	GCNNGC	1 cut(s)	698
CfoI	GCGC	1 cut(s)	548
Cfr13I	GGNCC	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	563
CviAII	CATG	6 cut(s)	108, 154, 203, 360, 409, 463
CviQI	GTAC	1 cut(s)	563
DdeI	CTNAG	5 cut(s)	188, 287, 542, 723, 864
DpnI	GATC	7 cut(s)	32, 41, 555, 651, 732, 923, 953
DpnII	GATC	7 cut(s)	30, 39, 553, 649, 730, 921, 951
EaeI	YGGCCR	1 cut(s)	777
Eam1104I	CTCTTC	3 cut(s)	436, 607, 819
EarI	CTCTTC	3 cut(s)	436, 607, 819
Eco130I	CCWWGG	3 cut(s)	34, 153, 657
Eco31I	GGTCTC	2 cut(s)	797, 824
Eco47I	GGWCC	1 cut(s)	179
Eco47III	AGCGCT	1 cut(s)	547
Eco81I	CCTNAGG	1 cut(s)	864
EcoRI	GAATTC	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	346
EcoT14I	CCWWGG	3 cut(s)	34, 153, 657
EcoT22I	ATGCAT	1 cut(s)	198
ErhI	CCWWGG	3 cut(s)	34, 153, 657
Esp3I	CGTCTC	2 cut(s)	597, 763
FaeI	CATG	6 cut(s)	111, 157, 206, 363, 412, 466
FalI	AAGNNNNNCTT	1 cut(s)	37
FaqI	GGGAC	1 cut(s)	601
FatI	CATG	6 cut(s)	107, 153, 202, 359, 408, 462
Fnu4HI	GCNGC	2 cut(s)	810, 967
FokI	GGATG	4 cut(s)	11, 284, 404, 437
Fsp4HI	GCNGC	2 cut(s)	810, 967
FspBI	CTAG	1 cut(s)	387
GlaI	GCGC	1 cut(s)	547
GluI	GCNGC	2 cut(s)	810, 967
GsuI	CTGGAG	1 cut(s)	369
HaeII	RGCGCY	1 cut(s)	549
HaeIII	GGCC	2 cut(s)	125, 779
HapII	CCGG	2 cut(s)	633, 734
HhaI	GCGC	1 cut(s)	548
Hin1I	GRCGYC	2 cut(s)	590, 756
Hin1II	CATG	6 cut(s)	111, 157, 206, 363, 412, 466
Hin6I	GCGC	1 cut(s)	546
HinP1I	GCGC	1 cut(s)	546
HindIII	AAGCTT	3 cut(s)	14, 339, 523
HinfI	GANTC	3 cut(s)	306, 574, 960
HpaII	CCGG	2 cut(s)	633, 734
HphI	GGTGA	3 cut(s)	483, 622, 919
Hpy188I	TCNGA	4 cut(s)	191, 367, 805, 926
Hpy188III	TCNNGA	5 cut(s)	28, 133, 745, 818, 883
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	6 cut(s)	130, 177, 529, 616, 780, 880
HpyCH4III	ACNGT	3 cut(s)	230, 317, 827
HpyCH4IV	ACGT	3 cut(s)	590, 756, 843
HpyF10VI	GCNNNNNNNGC	2 cut(s)	193, 383
HpyF3I	CTNAG	5 cut(s)	188, 287, 542, 723, 864
HpySE526I	ACGT	3 cut(s)	590, 756, 843
Hsp92I	GRCGYC	2 cut(s)	590, 756
Hsp92II	CATG	6 cut(s)	111, 157, 206, 363, 412, 466
HspAI	GCGC	1 cut(s)	546
Kzo9I	GATC	7 cut(s)	30, 39, 553, 649, 730, 921, 951
LguI	GCTCTTC	2 cut(s)	607, 819
Lsp1109I	GCAGC	1 cut(s)	821
LweI	GCATC	3 cut(s)	262, 460, 796
MaeI	CTAG	1 cut(s)	387
MaeII	ACGT	3 cut(s)	590, 756, 843
MaeIII	GTNAC	2 cut(s)	575, 844
MalI	GATC	7 cut(s)	32, 41, 555, 651, 732, 923, 953
MboI	GATC	7 cut(s)	30, 39, 553, 649, 730, 921, 951
MboII	GAAGA	7 cut(s)	13, 240, 284, 453, 594, 697, 806
MflI	RGATCY	3 cut(s)	553, 649, 730
MlsI	TGGCCA	1 cut(s)	779
MluCI	AATT	2 cut(s)	244, 976
MluNI	TGGCCA	1 cut(s)	779
MlyI	GAGTC	3 cut(s)	315, 583, 969
MnlI	CCTC	4 cut(s)	115, 288, 290, 504
Mox20I	TGGCCA	1 cut(s)	779
Mph1103I	ATGCAT	1 cut(s)	198
MscI	TGGCCA	1 cut(s)	779
MseI	TTAA	3 cut(s)	321, 975, 979
MslI	CAYNNNNRTG	2 cut(s)	201, 423
Msp20I	TGGCCA	1 cut(s)	779
MspI	CCGG	2 cut(s)	633, 734
MspR9I	CCNGG	2 cut(s)	348, 735
Mva1269I	GAATGC	2 cut(s)	198, 946
MvaI	CCWGG	1 cut(s)	348
MvnI	CGCG	1 cut(s)	404
MwoI	GCNNNNNNNGC	2 cut(s)	193, 383
NciI	CCSGG	1 cut(s)	735
NcoI	CCATGG	1 cut(s)	153
NdeII	GATC	7 cut(s)	30, 39, 553, 649, 730, 921, 951
NlaIII	CATG	6 cut(s)	111, 157, 206, 363, 412, 466
NlaIV	GGNNCC	1 cut(s)	732
NmeAIII	GCCGAG	1 cut(s)	145
NmuCI	GTSAC	1 cut(s)	575
NsiI	ATGCAT	1 cut(s)	198
PacI	TTAATTAA	1 cut(s)	979
PciSI	GCTCTTC	2 cut(s)	607, 819
PctI	GAATGC	2 cut(s)	198, 946
PfoI	TCCNGGA	1 cut(s)	346
PkrI	GCNGC	2 cut(s)	811, 968
PleI	GAGTC	3 cut(s)	314, 582, 968
PpsI	GAGTC	3 cut(s)	314, 582, 968
PshBI	ATTAAT	1 cut(s)	975
Psp6I	CCWGG	1 cut(s)	346
PspGI	CCWGG	1 cut(s)	346
PspN4I	GGNNCC	1 cut(s)	732
PspPI	GGNCC	1 cut(s)	179
PstI	CTGCAG	1 cut(s)	968
PsuI	RGATCY	3 cut(s)	553, 649, 730
RsaI	GTAC	1 cut(s)	564
RsaNI	GTAC	1 cut(s)	563
RseI	CAYNNNNRTG	2 cut(s)	201, 423
SapI	GCTCTTC	2 cut(s)	607, 819
SaqAI	TTAA	3 cut(s)	321, 975, 979
SatI	GCNGC	2 cut(s)	810, 967
Sau3AI	GATC	7 cut(s)	30, 39, 553, 649, 730, 921, 951
Sau96I	GGNCC	1 cut(s)	179
ScaI	AGTACT	1 cut(s)	564
SchI	GAGTC	3 cut(s)	315, 583, 969
ScrFI	CCNGG	2 cut(s)	348, 735
SfaNI	GCATC	3 cut(s)	262, 460, 796
SfcI	CTRYAG	1 cut(s)	964
SinI	GGWCC	1 cut(s)	179
SmiMI	CAYNNNNRTG	2 cut(s)	201, 423
Sse9I	AATT	2 cut(s)	244, 976
SsiI	CCGC	2 cut(s)	158, 404
SspMI	CTAG	1 cut(s)	387
StyD4I	CCNGG	2 cut(s)	346, 733
StyI	CCWWGG	3 cut(s)	34, 153, 657
TaaI	ACNGT	3 cut(s)	230, 317, 827
TaiI	ACGT	3 cut(s)	593, 759, 846
TaqI	TCGA	1 cut(s)	295
TasI	AATT	2 cut(s)	244, 976
TatI	WGTACW	1 cut(s)	562
Tru1I	TTAA	3 cut(s)	321, 975, 979
Tru9I	TTAA	3 cut(s)	321, 975, 979
TscAI	CASTG	4 cut(s)	240, 322, 425, 832
TseFI	GTSAC	1 cut(s)	575
TseI	GCWGC	2 cut(s)	809, 966
Tsp45I	GTSAC	1 cut(s)	575
TspDTI	ATGAA	3 cut(s)	13, 348, 704
TspRI	CASTG	4 cut(s)	240, 322, 425, 832
VpaK11BI	GGWCC	1 cut(s)	179
VspI	ATTAAT	1 cut(s)	975
XapI	RAATTY	1 cut(s)	244
XspI	CTAG	1 cut(s)	387
ZraI	GACGTC	2 cut(s)	591, 757
ZrmI	AGTACT	1 cut(s)	564
Zsp2I	ATGCAT	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.