AT3G01410

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010670
Physical Location & Seq
Reverse (-)
153343 .. 155657
2315 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G01410.1

Sequence Viewer

Length: 885 bp
ATGGGTTCCACAATGGAGGATGAAAAAGATGCGTTTTACATTGTGCGTAAGGGAGACATTATTGGTGTCTATCGAAGCTTGAGCGAATGCCAAGGGCAAGCTGGTTCATCTGTATCACATCCTGCAATGAGTGTGTACAAAGGATATGGTTGGCCAAAAGGAGCAGAGGACTTGTTATCTTCGTTTGGGATTAAGAACGCTCTTTTTTCTGTCAATGCAAGTCATGTCAAAGATGATGCTTTTGGGAAACTCATTCCTTGTCCTGTTCAGCAACCGTCTTCTTCCCAAGGAGAGTCTCTCAACAAATCTTCCCCGTCTAAGAGATTGCAAGATATGGGAAGTGGTGAATCGGGTTCATTTTCCCCTAGTCCTCCGCAGAAGCAGCTTAAGATCGAAAATGACATGCTTCGTCGGATTCCTTCCAGTCTCCTAACTCGGACACCTATACGTCAAAATGATTCATGTACCATTGAGTTTGATGGTGCTTCTAAAGGAAACCCAGGGAAGGCTGGTGCAGGAGCTGTTCTCCGTGCTTCAGATAATAGTGTCCTCTTCTATTTACGGGAAGGTGTTGGCAATGCCACAAACAATGTTGCAGAGTATCGAGCTCTGCTTCTTGGTTTGAGGTCTGCTCTTGACAAAGGGTTTAAAAATGTGCACGTCTTAGGCGACTCAATGCTTGTCTGTATGCAGGTTCAAGGTGCATGGAAAACCAATCACCCAAAAATGGCTGAGCTGTGCAAACAGGCTAAGGAGCTCATGAACAGTTTTAAAACATTCGATATCAAACACATTGCCAGGGAAAAAAATTCAGAAGCTGATAAACAAGCTAACAGTGCGATTTTTCTGGCAGATGGTCAAACGCAAGTGATTTCAGGCGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cauli_VI RVT_3

Protein Analysis

294

Amino Acids

31.67

Weight (kDa)

8.85

Isoelectric Point (pI)

48.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_H PF00075 156 - 280 1.8e-09 RNase H
RVT_3 PF13456 159 - 280 1.9e-28 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 682
AciI CCGC 2 cut(s) 374, 879
AcoI YGGCCR 1 cut(s) 152
AcsI RAATTY 1 cut(s) 808
AcuI CTGAAG 1 cut(s) 519
AfaI GTAC 2 cut(s) 137, 466
AfiI CCNNNNNNNGG 2 cut(s) 505, 727
AflII CTTAAG 1 cut(s) 386
AgsI TTSAA 1 cut(s) 698
AjiI CACGTC 1 cut(s) 661
AjnI CCWGG 2 cut(s) 499, 797
AluBI AGCT 9 cut(s) 78, 101, 385, 521, 608, 736, 757, 818, 830
AluI AGCT 9 cut(s) 78, 101, 385, 521, 608, 736, 757, 818, 830
Alw21I GWGCWC 3 cut(s) 610, 660, 759
Alw26I GTCTC 3 cut(s) 48, 300, 431
Alw44I GTGCAC 1 cut(s) 656
AlwNI CAGNNNCTG 2 cut(s) 521, 818
AoxI GGCC 1 cut(s) 152
ApaLI GTGCAC 1 cut(s) 656
ApeKI GCWGC 1 cut(s) 382
ApoI RAATTY 1 cut(s) 808
AsuHPI GGTGA 2 cut(s) 356, 710
BaeGI GKGCMC 1 cut(s) 660
BalI TGGCCA 1 cut(s) 154
BanII GRGCYC 2 cut(s) 610, 759
BbsI GAAGAC 1 cut(s) 270
Bbv12I GWGCWC 3 cut(s) 610, 660, 759
BbvI GCAGC 1 cut(s) 394
BccI CCATC 2 cut(s) 473, 848
BciT130I CCWGG 2 cut(s) 501, 799
BcoDI GTCTC 3 cut(s) 48, 300, 431
BfaI CTAG 2 cut(s) 366, 883
BfrI CTTAAG 1 cut(s) 386
BfuAI ACCTGC 1 cut(s) 682
BisI GCNGC 2 cut(s) 383, 880
BlpI GCTNAGC 1 cut(s) 732
BlsI GCNGC 2 cut(s) 384, 881
Bme1390I CCNGG 2 cut(s) 501, 799
BmgBI CACGTC 1 cut(s) 661
BmiI GGNNCC 1 cut(s) 7
BmrFI CCNGG 2 cut(s) 501, 799
BmsI GCATC 2 cut(s) 19, 226
BpiI GAAGAC 1 cut(s) 270
BplI GAGNNNNNCTC 6 cut(s) 282, 314, 510, 542, 616, 648
Bpu10I CCTNAGC 1 cut(s) 750
Bpu1102I GCTNAGC 1 cut(s) 732
BpuEI CTTGAG 1 cut(s) 100
BsaJI CCNNGG 5 cut(s) 91, 286, 499, 500, 798
Bsc4I CCNNNNNNNGG 2 cut(s) 505, 727
Bse1I ACTGG 1 cut(s) 423
Bse3DI GCAATG 3 cut(s) 132, 583, 792
BseBI CCWGG 2 cut(s) 501, 799
BseDI CCNNGG 5 cut(s) 91, 286, 499, 500, 798
BseGI GGATG 2 cut(s) 25, 118
BseLI CCNNNNNNNGG 2 cut(s) 505, 727
BseMI GCAATG 3 cut(s) 132, 583, 792
BseMII CTCAG 1 cut(s) 723
BseNI ACTGG 1 cut(s) 423
BseSI GKGCMC 1 cut(s) 660
BseXI GCAGC 1 cut(s) 394
BsgI GTGCAG 1 cut(s) 534
BshFI GGCC 1 cut(s) 154
BsiHKAI GWGCWC 3 cut(s) 610, 660, 759
BslI CCNNNNNNNGG 2 cut(s) 505, 727
BsmAI GTCTC 3 cut(s) 48, 300, 431
BsmI GAATGC 1 cut(s) 92
BsnI GGCC 1 cut(s) 154
Bsp1286I GDGCHC 3 cut(s) 610, 660, 759
Bsp1407I TGTACA 1 cut(s) 135
Bsp143I GATC 1 cut(s) 390
Bsp1720I GCTNAGC 1 cut(s) 732
BspACI CCGC 2 cut(s) 374, 879
BspANI GGCC 1 cut(s) 154
BspCNI CTCAG 1 cut(s) 724
BspHI TCATGA 1 cut(s) 759
BspLI GGNNCC 1 cut(s) 7
BspMI ACCTGC 1 cut(s) 682
BspTI CTTAAG 1 cut(s) 386
BsrDI GCAATG 3 cut(s) 132, 583, 792
BsrGI TGTACA 1 cut(s) 135
BsrI ACTGG 1 cut(s) 423
BssECI CCNNGG 5 cut(s) 91, 286, 499, 500, 798
BssMI GATC 1 cut(s) 390
BssT1I CCWWGG 2 cut(s) 91, 286
Bst2UI CCWGG 2 cut(s) 501, 799
Bst4CI ACNGT 3 cut(s) 276, 767, 836
Bst6I CTCTTC 1 cut(s) 557
BstAFI CTTAAG 1 cut(s) 386
BstAUI TGTACA 1 cut(s) 135
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 4 cut(s) 318, 664, 732, 750
BstF5I GGATG 2 cut(s) 25, 118
BstKTI GATC 1 cut(s) 393
BstMAI GTCTC 3 cut(s) 48, 300, 431
BstMBI GATC 1 cut(s) 390
BstMWI GCNNNNNNNGC 2 cut(s) 382, 836
BstNI CCWGG 2 cut(s) 501, 799
BstNSI RCATGY 1 cut(s) 406
BstSCI CCNGG 2 cut(s) 499, 797
BstSLI GKGCMC 1 cut(s) 660
BstV1I GCAGC 1 cut(s) 394
BstV2I GAAGAC 1 cut(s) 270
BsuRI GGCC 1 cut(s) 154
BtrI CACGTC 1 cut(s) 661
BtsCI GGATG 2 cut(s) 25, 118
BtsIMutI CAGTG 1 cut(s) 841
BveI ACCTGC 1 cut(s) 682
Cac8I GCNNGC 1 cut(s) 99
CaiI CAGNNNCTG 2 cut(s) 521, 818
CciI TCATGA 1 cut(s) 759
Csp6I GTAC 2 cut(s) 136, 465
CviAII CATG 5 cut(s) 224, 403, 462, 705, 760
CviQI GTAC 2 cut(s) 136, 465
DdeI CTNAG 4 cut(s) 318, 664, 732, 750
DpnI GATC 1 cut(s) 392
DpnII GATC 1 cut(s) 390
DraI TTTAAA 2 cut(s) 649, 772
EaeI YGGCCR 1 cut(s) 152
Eam1104I CTCTTC 1 cut(s) 557
EarI CTCTTC 1 cut(s) 557
Ecl136II GAGCTC 2 cut(s) 608, 757
Eco130I CCWWGG 2 cut(s) 91, 286
Eco24I GRGCYC 2 cut(s) 610, 759
Eco32I GATATC 1 cut(s) 784
Eco53kI GAGCTC 2 cut(s) 608, 757
Eco57I CTGAAG 1 cut(s) 519
EcoICRI GAGCTC 2 cut(s) 608, 757
EcoRII CCWGG 2 cut(s) 499, 797
EcoRV GATATC 1 cut(s) 784
EcoT14I CCWWGG 2 cut(s) 91, 286
EcoT38I GRGCYC 2 cut(s) 610, 759
ErhI CCWWGG 2 cut(s) 91, 286
FaeI CATG 5 cut(s) 227, 406, 465, 708, 763
FaiI YATR 9 cut(s) 147, 225, 335, 404, 446, 463, 689, 706, 761
FatI CATG 5 cut(s) 223, 402, 461, 704, 759
Fnu4HI GCNGC 2 cut(s) 383, 880
FokI GGATG 2 cut(s) 32, 105
FriOI GRGCYC 2 cut(s) 610, 759
Fsp4HI GCNGC 2 cut(s) 383, 880
FspBI CTAG 2 cut(s) 366, 883
GluI GCNGC 2 cut(s) 383, 880
HaeIII GGCC 1 cut(s) 154
Hin1II CATG 5 cut(s) 227, 406, 465, 708, 763
HindIII AAGCTT 1 cut(s) 76
HinfI GANTC 5 cut(s) 293, 347, 415, 458, 671
HphI GGTGA 2 cut(s) 356, 710
Hpy166II GTNNAC 2 cut(s) 136, 658
Hpy188I TCNGA 4 cut(s) 414, 438, 538, 814
Hpy188III TCNNGA 2 cut(s) 635, 760
Hpy8I GTNNAC 2 cut(s) 136, 658
Hpy99I CGWCG 1 cut(s) 414
HpyAV CCTTC 3 cut(s) 429, 499, 560
HpyCH4III ACNGT 3 cut(s) 276, 767, 836
HpyCH4IV ACGT 2 cut(s) 448, 660
HpyCH4V TGCA 9 cut(s) 125, 218, 328, 515, 596, 658, 691, 704, 741
HpyF10VI GCNNNNNNNGC 2 cut(s) 382, 836
HpyF3I CTNAG 4 cut(s) 318, 664, 732, 750
HpySE526I ACGT 2 cut(s) 448, 660
Hsp92II CATG 5 cut(s) 227, 406, 465, 708, 763
Kzo9I GATC 1 cut(s) 390
LmnI GCTCC 3 cut(s) 161, 518, 754
Lsp1109I GCAGC 1 cut(s) 394
LweI GCATC 2 cut(s) 19, 226
MaeI CTAG 2 cut(s) 366, 883
MaeII ACGT 2 cut(s) 448, 660
MalI GATC 1 cut(s) 392
MboI GATC 1 cut(s) 390
MboII GAAGA 5 cut(s) 171, 270, 273, 300, 544
MhlI GDGCHC 3 cut(s) 610, 660, 759
MlsI TGGCCA 1 cut(s) 154
MluCI AATT 1 cut(s) 808
MluNI TGGCCA 1 cut(s) 154
MlyI GAGTC 2 cut(s) 302, 665
MmeI TCCRAC 1 cut(s) 392
MnlI CCTC 5 cut(s) 10, 160, 381, 560, 618
Mox20I TGGCCA 1 cut(s) 154
MscI TGGCCA 1 cut(s) 154
MseI TTAA 4 cut(s) 192, 387, 648, 771
Msp20I TGGCCA 1 cut(s) 154
MspCI CTTAAG 1 cut(s) 386
MspR9I CCNGG 2 cut(s) 501, 799
Mva1269I GAATGC 1 cut(s) 92
MvaI CCWGG 2 cut(s) 501, 799
MwoI GCNNNNNNNGC 2 cut(s) 382, 836
NdeII GATC 1 cut(s) 390
NlaIII CATG 5 cut(s) 227, 406, 465, 708, 763
NlaIV GGNNCC 1 cut(s) 7
NspI RCATGY 1 cut(s) 406
PagI TCATGA 1 cut(s) 759
PasI CCCWGGG 1 cut(s) 500
PcsI WCGNNNNNNNCGW 1 cut(s) 666
PctI GAATGC 1 cut(s) 92
PfeI GAWTC 3 cut(s) 347, 415, 458
PkrI GCNGC 2 cut(s) 384, 881
PleI GAGTC 2 cut(s) 301, 665
PpsI GAGTC 2 cut(s) 301, 665
Psp124BI GAGCTC 2 cut(s) 610, 759
Psp6I CCWGG 2 cut(s) 499, 797
PspGI CCWGG 2 cut(s) 499, 797
PspN4I GGNNCC 1 cut(s) 7
PstNI CAGNNNCTG 2 cut(s) 521, 818
RsaI GTAC 2 cut(s) 137, 466
RsaNI GTAC 2 cut(s) 136, 465
SacI GAGCTC 2 cut(s) 610, 759
SaqAI TTAA 4 cut(s) 192, 387, 648, 771
SatI GCNGC 2 cut(s) 383, 880
Sau3AI GATC 1 cut(s) 390
SchI GAGTC 2 cut(s) 302, 665
ScrFI CCNGG 2 cut(s) 501, 799
SduI GDGCHC 3 cut(s) 610, 660, 759
SfaNI GCATC 2 cut(s) 19, 226
SmlI CTYRAG 2 cut(s) 79, 386
SmoI CTYRAG 2 cut(s) 79, 386
Sse9I AATT 1 cut(s) 808
SsiI CCGC 2 cut(s) 374, 879
SspMI CTAG 2 cut(s) 366, 883
SstI GAGCTC 2 cut(s) 610, 759
StyD4I CCNGG 2 cut(s) 499, 797
StyI CCWWGG 2 cut(s) 91, 286
TaaI ACNGT 3 cut(s) 276, 767, 836
TaiI ACGT 2 cut(s) 451, 663
TaqI TCGA 4 cut(s) 73, 393, 604, 780
TasI AATT 1 cut(s) 808
TatI WGTACW 1 cut(s) 135
TauI GCSGC 1 cut(s) 882
TfiI GAWTC 3 cut(s) 347, 415, 458
Tru1I TTAA 4 cut(s) 192, 387, 648, 771
Tru9I TTAA 4 cut(s) 192, 387, 648, 771
TscAI CASTG 1 cut(s) 841
TseI GCWGC 1 cut(s) 382
TspDTI ATGAA 5 cut(s) 36, 96, 345, 450, 776
TspGWI ACGGA 1 cut(s) 518
TspRI CASTG 1 cut(s) 841
Vha464I CTTAAG 1 cut(s) 386
VneI GTGCAC 1 cut(s) 656
XapI RAATTY 1 cut(s) 808
XceI RCATGY 1 cut(s) 406
XcmI CCANNNNNNNNNTGG 1 cut(s) 98
XspI CTAG 2 cut(s) 366, 883
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.