Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0010670

Physical Location & Seq

Genomic Coordinates Reverse (-)

25591797 .. 25594164

Gene Structure 2368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G280000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGCGGAAGAGGGTGATGCTTTTTATGTGGTTCGGAAGGGGGATATCATTGGCGTATATAAAAACTTAAGGGATTGTCAAAACCAAGCCGGTTCTTCGGTATGCAATCCTTCTATAAGTGTGTTCAAAGGCCACGGTTTGCCTAGAGAGGCTGAGGAGTACCTTGTCTCCCATGGGCTTAAGAATGCTTCTTATACTATCTGTGCCAATGATGTGAAAGATGATCTTTTTGGAATAATTGCTGCTTGTCCTTACCAGCAGCCCGATTCTTCTATAGTAGAATCAGCTGTCAATGACTCAGCACCAAATAGATTTCGGGAGATGGCCGGGTCTACTTCATTCCCAACCTCTCTGACTCAGAGAAGGCATTTCAAATCTGATGATCATATTGAAACTCTATCTGTTTCTTATAGTGGTCCAGATTCTTCTACAGTAGAATCAGCTGTCAAGGACTACTCGCCACCAAAGAGATTGCAGGATATGGTTGGGACTACTTCATTCCCAACCTCTCAGAGAAAGCATTTCAAATATGATAATCCTATGGAAACTCAAGCAGTTCCTTCTAGTGGTCATTCCTGTATACTTGAGTTCGATGGTGCTTCAAAAGGAAATCCTGGACAATCTGGTGCAGGAGCTGTGCTACGAGCTGAAGATGGAAGCGCTGTCTACCGGTTACGTGAAGGGGTGGGCATTGCAACAAATAATGTTGCTGAATATCGAGCTGTAATTTTGGGATTGAAATATGCTCTTGAAAAAGGATATAAACACATTCGTGTTAAAGGAGACTCTAAACTTGTCTGCATGCAGATTCAGGGTCTCTGGGCAACCAAAAATGAGAATATGGCTGTGCTGTGCCAAGTGGCCAGGGAGCTCAAGGAAAAGTTTATGTCATTTGATATCAATCATGTTCTTAGGGATTACAATTCTGACGCTGATGTTCAAGCAAACCGAGCAATAAATCTTCAAGATGGACAAGTTGAAGTGGATTGGAACGGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cauli_VI RVT_3

Protein Analysis

334

Amino Acids

36.54

Weight (kDa)

5.94

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01410 AT3G01410
fragaria_vesca	FvH4_6g50271 FvH4_6g50271 FvH4_6g50271 FvH4_6g50271 FvH4_6g50271
malus_domestica	MD09G1038000.v1.1 MD17G1039000.v1.1
prunus_persica	Prupe.3G280000_v2.0.a1
pyrus_communis	pycom111g03030 pycom17g03520
rosa_chinensis	RchiOBHm_Chr2g0170591
rosa_laevigata	RLG00000021966
rosa_roxburghii	Rroxscaffold_2G00081200
rosa_samantha	Rh2AG621700 Rh2BG633100 Rh2CG602400 Rh2DG645900
rosa_wichuraiana	Rw2G051550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	332, 580, 666
AciI	CCGC	1 cut(s)	5
AcoI	YGGCCR	2 cut(s)	324, 861
AcuI	CTGAAG	1 cut(s)	669
AfaI	GTAC	1 cut(s)	161
AfeI	AGCGCT	1 cut(s)	661
AfiI	CCNNNNNNNGG	1 cut(s)	566
AflII	CTTAAG	2 cut(s)	67, 179
AgeI	ACCGGT	1 cut(s)	669
AjnI	CCWGG	2 cut(s)	613, 863
AleI	CACNNNNGTG	1 cut(s)	771
AluBI	AGCT	6 cut(s)	287, 443, 635, 647, 722, 871
AluI	AGCT	6 cut(s)	287, 443, 635, 647, 722, 871
Alw21I	GWGCWC	1 cut(s)	873
Alw26I	GTCTC	3 cut(s)	172, 777, 821
AlwNI	CAGNNNCTG	1 cut(s)	635
Aor51HI	AGCGCT	1 cut(s)	661
AoxI	GGCC	3 cut(s)	130, 324, 861
ApeKI	GCWGC	2 cut(s)	242, 259
AsiGI	ACCGGT	1 cut(s)	669
AspLEI	GCGC	1 cut(s)	662
AspS9I	GGNCC	1 cut(s)	416
AsuC2I	CCSGG	1 cut(s)	328
AsuHPI	GGTGA	1 cut(s)	26
AvaII	GGWCC	1 cut(s)	416
BalI	TGGCCA	1 cut(s)	863
BanII	GRGCYC	1 cut(s)	873
Bbv12I	GWGCWC	1 cut(s)	873
BbvCI	CCTCAGC	1 cut(s)	153
BbvI	GCAGC	2 cut(s)	229, 271
BccI	CCATC	4 cut(s)	316, 587, 647, 962
BciT130I	CCWGG	2 cut(s)	615, 865
BclI	TGATCA	1 cut(s)	382
BcnI	CCSGG	1 cut(s)	328
BcoDI	GTCTC	3 cut(s)	172, 777, 821
BfaI	CTAG	2 cut(s)	144, 564
BfmI	CTRYAG	2 cut(s)	273, 429
BfoI	RGCGCY	1 cut(s)	663
BfrI	CTTAAG	2 cut(s)	67, 179
BisI	GCNGC	2 cut(s)	243, 260
BlsI	GCNGC	2 cut(s)	244, 261
Bme1390I	CCNGG	3 cut(s)	328, 615, 865
Bme18I	GGWCC	1 cut(s)	416
BmgT120I	GGNCC	1 cut(s)	416
BmrFI	CCNGG	3 cut(s)	328, 615, 865
BmsI	GCATC	1 cut(s)	7
Bpu10I	CCTNAGC	1 cut(s)	153
BpuEI	CTTGAG	3 cut(s)	534, 605, 857
BpuMI	CCSGG	1 cut(s)	328
BsaAI	YACGTR	1 cut(s)	677
BsaBI	GATNNNNATC	1 cut(s)	900
BsaI	GGTCTC	1 cut(s)	821
BsaJI	CCNNGG	3 cut(s)	133, 172, 864
BsaWI	WCCGGW	1 cut(s)	669
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	1 cut(s)	566
Bse118I	RCCGGY	2 cut(s)	89, 669
Bse3DI	GCAATG	1 cut(s)	690
Bse8I	GATNNNNATC	1 cut(s)	900
BseBI	CCWGG	2 cut(s)	615, 865
BseDI	CCNNGG	3 cut(s)	133, 172, 864
BseJI	GATNNNNATC	1 cut(s)	900
BseLI	CCNNNNNNNGG	1 cut(s)	566
BseMI	GCAATG	1 cut(s)	690
BseMII	CTCAG	4 cut(s)	144, 312, 371, 524
BseRI	GAGGAG	1 cut(s)	170
BseXI	GCAGC	2 cut(s)	229, 271
BsgI	GTGCAG	1 cut(s)	648
BshFI	GGCC	3 cut(s)	132, 326, 863
BshTI	ACCGGT	1 cut(s)	669
BsiHKAI	GWGCWC	1 cut(s)	873
BsiSI	CCGG	3 cut(s)	90, 327, 670
BslFI	GGGAC	1 cut(s)	502
BslI	CCNNNNNNNGG	1 cut(s)	566
BsmAI	GTCTC	3 cut(s)	172, 777, 821
BsmFI	GGGAC	1 cut(s)	502
BsmI	GAATGC	1 cut(s)	190
BsnI	GGCC	3 cut(s)	132, 326, 863
Bso31I	GGTCTC	1 cut(s)	821
Bsp1286I	GDGCHC	1 cut(s)	873
Bsp143I	GATC	2 cut(s)	223, 382
Bsp19I	CCATGG	1 cut(s)	172
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	3 cut(s)	132, 326, 863
BspCNI	CTCAG	4 cut(s)	145, 311, 370, 523
BspTI	CTTAAG	2 cut(s)	67, 179
BspTNI	GGTCTC	1 cut(s)	821
BsrDI	GCAATG	1 cut(s)	690
BsrFI	RCCGGY	2 cut(s)	89, 669
BssAI	RCCGGY	2 cut(s)	89, 669
BssECI	CCNNGG	3 cut(s)	133, 172, 864
BssMI	GATC	2 cut(s)	223, 382
BssNAI	GTATAC	1 cut(s)	581
BssT1I	CCWWGG	1 cut(s)	172
Bst1107I	GTATAC	1 cut(s)	581
Bst2UI	CCWGG	2 cut(s)	615, 865
Bst4CI	ACNGT	2 cut(s)	137, 433
Bst6I	CTCTTC	1 cut(s)	3
BstAFI	CTTAAG	2 cut(s)	67, 179
BstBAI	YACGTR	1 cut(s)	677
BstC8I	GCNNGC	1 cut(s)	803
BstDEI	CTNAG	5 cut(s)	153, 298, 357, 510, 911
BstDSI	CCRYGG	2 cut(s)	133, 172
BstH2I	RGCGCY	1 cut(s)	663
BstHHI	GCGC	1 cut(s)	662
BstKTI	GATC	2 cut(s)	226, 385
BstMAI	GTCTC	3 cut(s)	172, 777, 821
BstMBI	GATC	2 cut(s)	223, 382
BstMWI	GCNNNNNNNGC	1 cut(s)	950
BstNI	CCWGG	2 cut(s)	615, 865
BstNSI	RCATGY	1 cut(s)	805
BstSCI	CCNGG	3 cut(s)	326, 613, 863
BstSFI	CTRYAG	2 cut(s)	273, 429
BstV1I	GCAGC	2 cut(s)	229, 271
BstZ17I	GTATAC	1 cut(s)	581
BsuRI	GGCC	3 cut(s)	132, 326, 863
BtgI	CCRYGG	2 cut(s)	133, 172
Cac8I	GCNNGC	1 cut(s)	803
CaiI	CAGNNNCTG	1 cut(s)	635
CfoI	GCGC	1 cut(s)	662
Cfr10I	RCCGGY	2 cut(s)	89, 669
Cfr13I	GGNCC	1 cut(s)	416
CseI	GACGC	1 cut(s)	938
Csp6I	GTAC	1 cut(s)	160
CspAI	ACCGGT	1 cut(s)	669
CviAII	CATG	3 cut(s)	173, 802, 905
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	5 cut(s)	153, 298, 357, 510, 911
DpnI	GATC	2 cut(s)	225, 384
DpnII	GATC	2 cut(s)	223, 382
EaeI	YGGCCR	2 cut(s)	324, 861
Eam1104I	CTCTTC	1 cut(s)	3
EarI	CTCTTC	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	871
Eco130I	CCWWGG	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	873
Eco31I	GGTCTC	1 cut(s)	821
Eco32I	GATATC	2 cut(s)	46, 898
Eco47I	GGWCC	1 cut(s)	416
Eco47III	AGCGCT	1 cut(s)	661
Eco53kI	GAGCTC	1 cut(s)	871
Eco57I	CTGAAG	1 cut(s)	669
EcoICRI	GAGCTC	1 cut(s)	871
EcoRII	CCWGG	2 cut(s)	613, 863
EcoRV	GATATC	2 cut(s)	46, 898
EcoT14I	CCWWGG	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	873
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	3 cut(s)	176, 805, 908
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FaqI	GGGAC	1 cut(s)	502
FatI	CATG	3 cut(s)	172, 801, 904
FbaI	TGATCA	1 cut(s)	382
FblI	GTMKAC	3 cut(s)	332, 580, 666
Fnu4HI	GCNGC	2 cut(s)	243, 260
FriOI	GRGCYC	1 cut(s)	873
Fsp4HI	GCNGC	2 cut(s)	243, 260
FspBI	CTAG	2 cut(s)	144, 564
GlaI	GCGC	1 cut(s)	661
GluI	GCNGC	2 cut(s)	243, 260
HaeII	RGCGCY	1 cut(s)	663
HaeIII	GGCC	3 cut(s)	132, 326, 863
HapII	CCGG	3 cut(s)	90, 327, 670
HgaI	GACGC	1 cut(s)	938
HhaI	GCGC	1 cut(s)	662
Hin1II	CATG	3 cut(s)	176, 805, 908
Hin6I	GCGC	1 cut(s)	660
HinP1I	GCGC	1 cut(s)	660
HinfI	GANTC	8 cut(s)	266, 281, 296, 355, 422, 437, 785, 808
HpaII	CCGG	3 cut(s)	90, 327, 670
HphI	GGTGA	1 cut(s)	26
Hpy166II	GTNNAC	3 cut(s)	333, 581, 667
Hpy188I	TCNGA	6 cut(s)	36, 354, 360, 379, 513, 928
Hpy188III	TCNNGA	4 cut(s)	317, 419, 749, 965
Hpy8I	GTNNAC	3 cut(s)	333, 581, 667
HpyAV	CCTTC	5 cut(s)	31, 120, 357, 570, 674
HpyCH4III	ACNGT	2 cut(s)	137, 433
HpyCH4IV	ACGT	1 cut(s)	676
HpyCH4V	TGCA	6 cut(s)	105, 475, 629, 695, 801, 805
HpyF10VI	GCNNNNNNNGC	1 cut(s)	950
HpyF3I	CTNAG	5 cut(s)	153, 298, 357, 510, 911
HpySE526I	ACGT	1 cut(s)	676
Hsp92II	CATG	3 cut(s)	176, 805, 908
HspAI	GCGC	1 cut(s)	660
Ksp22I	TGATCA	1 cut(s)	382
Kzo9I	GATC	2 cut(s)	223, 382
LmnI	GCTCC	2 cut(s)	632, 868
Lsp1109I	GCAGC	2 cut(s)	229, 271
LweI	GCATC	1 cut(s)	7
MaeI	CTAG	2 cut(s)	144, 564
MaeII	ACGT	1 cut(s)	676
MaeIII	GTNAC	1 cut(s)	672
MalI	GATC	2 cut(s)	225, 384
MboI	GATC	2 cut(s)	223, 382
MboII	GAAGA	6 cut(s)	20, 87, 261, 417, 662, 953
MhlI	GDGCHC	1 cut(s)	873
MlsI	TGGCCA	1 cut(s)	863
MluCI	AATT	3 cut(s)	237, 726, 922
MluNI	TGGCCA	1 cut(s)	863
MlyI	GAGTC	3 cut(s)	290, 349, 779
MnlI	CCTC	5 cut(s)	4, 142, 148, 358, 517
Mox20I	TGGCCA	1 cut(s)	863
MscI	TGGCCA	1 cut(s)	863
MseI	TTAA	3 cut(s)	68, 180, 777
MslI	CAYNNNNRTG	1 cut(s)	771
Msp20I	TGGCCA	1 cut(s)	863
MspA1I	CMGCKG	2 cut(s)	287, 443
MspCI	CTTAAG	2 cut(s)	67, 179
MspI	CCGG	3 cut(s)	90, 327, 670
MspR9I	CCNGG	3 cut(s)	328, 615, 865
Mva1269I	GAATGC	1 cut(s)	190
MvaI	CCWGG	2 cut(s)	615, 865
MwoI	GCNNNNNNNGC	1 cut(s)	950
NciI	CCSGG	1 cut(s)	328
NcoI	CCATGG	1 cut(s)	172
NdeII	GATC	2 cut(s)	223, 382
NlaIII	CATG	3 cut(s)	176, 805, 908
NspI	RCATGY	1 cut(s)	805
OliI	CACNNNNGTG	1 cut(s)	771
PaeI	GCATGC	1 cut(s)	805
PctI	GAATGC	1 cut(s)	190
PfeI	GAWTC	5 cut(s)	266, 281, 422, 437, 808
PfoI	TCCNGGA	1 cut(s)	613
PinAI	ACCGGT	1 cut(s)	669
PkrI	GCNGC	2 cut(s)	244, 261
PleI	GAGTC	3 cut(s)	290, 349, 779
PpsI	GAGTC	3 cut(s)	290, 349, 779
Ppu21I	YACGTR	1 cut(s)	677
Psp124BI	GAGCTC	1 cut(s)	873
Psp6I	CCWGG	2 cut(s)	613, 863
PspGI	CCWGG	2 cut(s)	613, 863
PspPI	GGNCC	1 cut(s)	416
PstNI	CAGNNNCTG	1 cut(s)	635
PvuII	CAGCTG	2 cut(s)	287, 443
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
RseI	CAYNNNNRTG	1 cut(s)	771
SacI	GAGCTC	1 cut(s)	873
SaqAI	TTAA	3 cut(s)	68, 180, 777
SatI	GCNGC	2 cut(s)	243, 260
Sau3AI	GATC	2 cut(s)	223, 382
Sau96I	GGNCC	1 cut(s)	416
SchI	GAGTC	3 cut(s)	290, 349, 779
ScrFI	CCNGG	3 cut(s)	328, 615, 865
SduI	GDGCHC	1 cut(s)	873
SfaNI	GCATC	1 cut(s)	7
SfcI	CTRYAG	2 cut(s)	273, 429
SinI	GGWCC	1 cut(s)	416
SmiMI	CAYNNNNRTG	1 cut(s)	771
SmlI	CTYRAG	5 cut(s)	67, 179, 549, 584, 872
SmoI	CTYRAG	5 cut(s)	67, 179, 549, 584, 872
SphI	GCATGC	1 cut(s)	805
Sse9I	AATT	3 cut(s)	237, 726, 922
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	2 cut(s)	144, 564
SstI	GAGCTC	1 cut(s)	873
StyD4I	CCNGG	3 cut(s)	326, 613, 863
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	2 cut(s)	137, 433
TaiI	ACGT	1 cut(s)	679
TaqI	TCGA	2 cut(s)	591, 718
TasI	AATT	3 cut(s)	237, 726, 922
TfiI	GAWTC	5 cut(s)	266, 281, 422, 437, 808
Tru1I	TTAA	3 cut(s)	68, 180, 777
Tru9I	TTAA	3 cut(s)	68, 180, 777
TseI	GCWGC	2 cut(s)	242, 259
TspDTI	ATGAA	2 cut(s)	327, 486
Vha464I	CTTAAG	2 cut(s)	67, 179
VpaK11BI	GGWCC	1 cut(s)	416
XceI	RCATGY	1 cut(s)	805
XmiI	GTMKAC	3 cut(s)	332, 580, 666
XspI	CTAG	2 cut(s)	144, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.