Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0010670

Physical Location & Seq

Genomic Coordinates Forward (+)

2316613 .. 2320059

Gene Structure 3447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1038000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCGGAAGAAGGTGATGCTTTTTACGTTGTTCGGAAAGGCGACGTTATTGGCATTTACAAAAACTTCACGGATTGCCAAAACCAAGCCGGTTCTTCGGTATGCAATCCTTCTGTAAGTGTGTTCGAAGGCCACTGTTTGCCGAAGGAGGCTGAGGAGTACCTTGTCTCCCACGGCCTTAAGAATGCTTCTTATACTATCAGTGCCAGTGATGTGAAAGATGACGCTCTTTTCGGAAAACTCGTTGCTTGCCCTATCCAGCAGCCAGATTCGCCTGCCAATGACTCACCGCCAAAGAGATCACATGAGGCGGTTGGGGCTACTGCATTCCCGAACTCTCAGACTCAGAGAAAGCATTTCAAATCTGATATTCAAACTGAAGCTGTTGCAAATTCATCTAGTTGTGACATGATTGGATCTACTCCATTCCCGATATCTCAGAGGAGGCATTTCACACCGGATAACCACATTGAAAATCTTGGAATTTCTTCTTTTTGTCAAACCTGTATACTTGAGTTTGATGGTGCTTCAAAAGGAAATCCTGGACTAGCTGGTGCAGGGGCTGTCCTACGAGCTGAAGACGGAAGCGCTGTGTACCGTTTGCGTGAAGGGGTGGGAATTGCAACAAATAACGTTGCAGAATATCGAGCTGTAATTCTGGGATTGAAATATGCTCTTGAGAAAGGATATAAACACATTCGTGTTAAAGGAGACTCTAAACTTGTCTGCATGCAGGTTCAAGGTCTCTGGAAAACGAAAAATCAGAACATGGCTGACCTGTGTGAAGTGGCCAAGGAGCTCAAAGACAAGTTTATGTCATTTGAGATCAATCATGTTCTTAGGGAATACAATTCTGAGGCTGATGTTCAAGCAAACCGAGCAATAAATCTTCGAGATGGACAAGTTGAAGTGGATTGGAATGGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cauli_VI RVT_3

Protein Analysis

310

Amino Acids

33.77

Weight (kDa)

5.93

Isoelectric Point (pI)

37.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	173 - 294	2.8e-25	Reverse transcriptase-like
RNase_H	PF00075	173 - 276	2.2e-09	RNase H

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01410 AT3G01410
fragaria_vesca	FvH4_6g50271 FvH4_6g50271 FvH4_6g50271 FvH4_6g50271 FvH4_6g50271
malus_domestica	MD09G1038000.v1.1 MD17G1039000.v1.1
prunus_persica	Prupe.3G280000_v2.0.a1
pyrus_communis	pycom111g03030 pycom17g03520
rosa_chinensis	RchiOBHm_Chr2g0170591
rosa_laevigata	RLG00000021966
rosa_roxburghii	Rroxscaffold_2G00081200
rosa_samantha	Rh2AG621700 Rh2BG633100 Rh2CG602400 Rh2DG645900
rosa_wichuraiana	Rw2G051550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	724
AccI	GTMKAC	1 cut(s)	508
AciI	CCGC	3 cut(s)	5, 290, 311
AclI	AACGTT	1 cut(s)	633
AclWI	GGATC	1 cut(s)	424
AcoI	YGGCCR	1 cut(s)	789
AcsI	RAATTY	2 cut(s)	391, 483
AcuI	CTGAAG	2 cut(s)	399, 597
AfaI	GTAC	2 cut(s)	161, 596
AfeI	AGCGCT	1 cut(s)	589
AflII	CTTAAG	1 cut(s)	179
AgsI	TTSAA	8 cut(s)	361, 374, 473, 531, 667, 740, 869, 908
AjnI	CCWGG	1 cut(s)	541
AleI	CACNNNNGTG	1 cut(s)	699
AluBI	AGCT	5 cut(s)	383, 551, 575, 650, 799
AluI	AGCT	5 cut(s)	383, 551, 575, 650, 799
Alw21I	GWGCWC	1 cut(s)	801
Alw26I	GTCTC	3 cut(s)	172, 705, 749
AlwI	GGATC	1 cut(s)	424
AlwNI	CAGNNNCTG	1 cut(s)	563
Aor51HI	AGCGCT	1 cut(s)	589
AoxI	GGCC	3 cut(s)	130, 175, 789
ApeKI	GCWGC	1 cut(s)	262
ApoI	RAATTY	2 cut(s)	391, 483
ArsI	GACNNNNNNTTYG	2 cut(s)	215, 247
Asp700I	GAANNNNTTC	1 cut(s)	487
AspLEI	GCGC	1 cut(s)	590
AsuHPI	GGTGA	2 cut(s)	26, 279
AsuII	TTCGAA	1 cut(s)	126
BalI	TGGCCA	1 cut(s)	791
BanII	GRGCYC	1 cut(s)	801
BbsI	GAAGAC	1 cut(s)	585
Bbv12I	GWGCWC	1 cut(s)	801
BbvCI	CCTCAGC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	274
BccI	CCATC	2 cut(s)	515, 890
BceAI	ACGGC	1 cut(s)	190
BciT130I	CCWGG	1 cut(s)	543
BcoDI	GTCTC	3 cut(s)	172, 705, 749
BfaI	CTAG	2 cut(s)	399, 548
BfoI	RGCGCY	1 cut(s)	591
BfrI	CTTAAG	1 cut(s)	179
BfuAI	ACCTGC	1 cut(s)	724
BisI	GCNGC	1 cut(s)	263
BlsI	GCNGC	1 cut(s)	264
Bme1390I	CCNGG	1 cut(s)	543
BmrFI	CCNGG	1 cut(s)	543
BmsI	GCATC	1 cut(s)	7
BpiI	GAAGAC	1 cut(s)	585
Bpu10I	CCTNAGC	1 cut(s)	153
Bpu14I	TTCGAA	1 cut(s)	126
BpuEI	CTTGAG	2 cut(s)	533, 698
BsaI	GGTCTC	1 cut(s)	749
BsaJI	CCNNGG	2 cut(s)	172, 792
BsaWI	WCCGGW	1 cut(s)	457
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bse118I	RCCGGY	1 cut(s)	89
Bse1I	ACTGG	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	543
BseDI	CCNNGG	2 cut(s)	172, 792
BseMII	CTCAG	5 cut(s)	144, 353, 359, 452, 846
BseNI	ACTGG	1 cut(s)	207
BseRI	GAGGAG	2 cut(s)	170, 457
BseXI	GCAGC	1 cut(s)	274
BsgI	GTGCAG	1 cut(s)	576
BshFI	GGCC	3 cut(s)	132, 177, 791
BsiHKAI	GWGCWC	1 cut(s)	801
BsiSI	CCGG	2 cut(s)	90, 458
BsmAI	GTCTC	3 cut(s)	172, 705, 749
BsmI	GAATGC	2 cut(s)	190, 326
BsnI	GGCC	3 cut(s)	132, 177, 791
Bso31I	GGTCTC	1 cut(s)	749
Bsp119I	TTCGAA	1 cut(s)	126
Bsp1286I	GDGCHC	1 cut(s)	801
Bsp143I	GATC	3 cut(s)	299, 416, 825
BspACI	CCGC	3 cut(s)	5, 290, 311
BspANI	GGCC	3 cut(s)	132, 177, 791
BspCNI	CTCAG	5 cut(s)	145, 352, 358, 451, 847
BspMI	ACCTGC	1 cut(s)	724
BspPI	GGATC	1 cut(s)	424
BspT104I	TTCGAA	1 cut(s)	126
BspTI	CTTAAG	1 cut(s)	179
BspTNI	GGTCTC	1 cut(s)	749
BsrFI	RCCGGY	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	207
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	2 cut(s)	172, 792
BssMI	GATC	3 cut(s)	299, 416, 825
BssNAI	GTATAC	1 cut(s)	509
BssT1I	CCWWGG	1 cut(s)	792
Bst1107I	GTATAC	1 cut(s)	509
Bst2UI	CCWGG	1 cut(s)	543
Bst4CI	ACNGT	2 cut(s)	137, 599
BstAFI	CTTAAG	1 cut(s)	179
BstBI	TTCGAA	1 cut(s)	126
BstC8I	GCNNGC	3 cut(s)	250, 276, 731
BstDEI	CTNAG	6 cut(s)	153, 339, 345, 438, 839, 855
BstDSI	CCRYGG	1 cut(s)	172
BstH2I	RGCGCY	1 cut(s)	591
BstHHI	GCGC	1 cut(s)	590
BstKTI	GATC	3 cut(s)	302, 419, 828
BstMAI	GTCTC	3 cut(s)	172, 705, 749
BstMBI	GATC	3 cut(s)	299, 416, 825
BstMWI	GCNNNNNNNGC	3 cut(s)	271, 317, 878
BstNI	CCWGG	1 cut(s)	543
BstNSI	RCATGY	1 cut(s)	733
BstSCI	CCNGG	1 cut(s)	541
BstV1I	GCAGC	1 cut(s)	274
BstV2I	GAAGAC	1 cut(s)	585
BstX2I	RGATCY	1 cut(s)	416
BstYI	RGATCY	1 cut(s)	416
BstZ17I	GTATAC	1 cut(s)	509
BsuRI	GGCC	3 cut(s)	132, 177, 791
BtgI	CCRYGG	1 cut(s)	172
BtsIMutI	CAGTG	3 cut(s)	133, 208, 214
BveI	ACCTGC	1 cut(s)	724
Cac8I	GCNNGC	3 cut(s)	250, 276, 731
CaiI	CAGNNNCTG	1 cut(s)	563
CfoI	GCGC	1 cut(s)	590
Cfr10I	RCCGGY	1 cut(s)	89
CseI	GACGC	1 cut(s)	233
Csp6I	GTAC	2 cut(s)	160, 595
CviAII	CATG	5 cut(s)	305, 409, 730, 769, 833
CviQI	GTAC	2 cut(s)	160, 595
DdeI	CTNAG	6 cut(s)	153, 339, 345, 438, 839, 855
DpnI	GATC	3 cut(s)	301, 418, 827
DpnII	GATC	3 cut(s)	299, 416, 825
EaeI	YGGCCR	1 cut(s)	789
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	799
Eco130I	CCWWGG	1 cut(s)	792
Eco24I	GRGCYC	1 cut(s)	801
Eco31I	GGTCTC	1 cut(s)	749
Eco32I	GATATC	1 cut(s)	435
Eco47III	AGCGCT	1 cut(s)	589
Eco53kI	GAGCTC	1 cut(s)	799
Eco57I	CTGAAG	2 cut(s)	399, 597
EcoICRI	GAGCTC	1 cut(s)	799
EcoRII	CCWGG	1 cut(s)	541
EcoRV	GATATC	1 cut(s)	435
EcoT14I	CCWWGG	1 cut(s)	792
EcoT38I	GRGCYC	1 cut(s)	801
ErhI	CCWWGG	1 cut(s)	792
FaeI	CATG	5 cut(s)	308, 412, 733, 772, 836
FatI	CATG	5 cut(s)	304, 408, 729, 768, 832
FblI	GTMKAC	1 cut(s)	508
Fnu4HI	GCNGC	1 cut(s)	263
FriOI	GRGCYC	1 cut(s)	801
Fsp4HI	GCNGC	1 cut(s)	263
FspBI	CTAG	2 cut(s)	399, 548
GlaI	GCGC	1 cut(s)	589
GluI	GCNGC	1 cut(s)	263
HaeII	RGCGCY	1 cut(s)	591
HaeIII	GGCC	3 cut(s)	132, 177, 791
HapII	CCGG	2 cut(s)	90, 458
HgaI	GACGC	1 cut(s)	233
HhaI	GCGC	1 cut(s)	590
Hin1II	CATG	5 cut(s)	308, 412, 733, 772, 836
Hin6I	GCGC	1 cut(s)	588
HinP1I	GCGC	1 cut(s)	588
HinfI	GANTC	4 cut(s)	269, 284, 343, 713
HpaII	CCGG	2 cut(s)	90, 458
HphI	GGTGA	2 cut(s)	26, 279
Hpy166II	GTNNAC	2 cut(s)	509, 595
Hpy188I	TCNGA	8 cut(s)	36, 236, 342, 348, 367, 441, 765, 856
Hpy188III	TCNNGA	5 cut(s)	331, 430, 677, 748, 893
Hpy8I	GTNNAC	2 cut(s)	509, 595
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	5 cut(s)	5, 120, 122, 139, 602
HpyCH4III	ACNGT	2 cut(s)	137, 599
HpyCH4IV	ACGT	3 cut(s)	27, 45, 633
HpyCH4V	TGCA	8 cut(s)	105, 326, 389, 557, 623, 638, 729, 733
HpyF10VI	GCNNNNNNNGC	3 cut(s)	271, 317, 878
HpyF3I	CTNAG	6 cut(s)	153, 339, 345, 438, 839, 855
HpySE526I	ACGT	3 cut(s)	27, 45, 633
Hsp92II	CATG	5 cut(s)	308, 412, 733, 772, 836
HspAI	GCGC	1 cut(s)	588
Kzo9I	GATC	3 cut(s)	299, 416, 825
LmnI	GCTCC	1 cut(s)	796
Lsp1109I	GCAGC	1 cut(s)	274
LweI	GCATC	1 cut(s)	7
MaeI	CTAG	2 cut(s)	399, 548
MaeII	ACGT	3 cut(s)	27, 45, 633
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	3 cut(s)	301, 418, 827
MboI	GATC	3 cut(s)	299, 416, 825
MboII	GAAGA	5 cut(s)	20, 87, 480, 590, 881
MflI	RGATCY	1 cut(s)	416
MhlI	GDGCHC	1 cut(s)	801
MlsI	TGGCCA	1 cut(s)	791
MluCI	AATT	5 cut(s)	391, 483, 618, 654, 850
MluNI	TGGCCA	1 cut(s)	791
MlyI	GAGTC	3 cut(s)	278, 337, 707
MnlI	CCTC	6 cut(s)	142, 148, 301, 435, 438, 850
Mox20I	TGGCCA	1 cut(s)	791
MroXI	GAANNNNTTC	1 cut(s)	487
MscI	TGGCCA	1 cut(s)	791
MseI	TTAA	2 cut(s)	180, 705
MslI	CAYNNNNRTG	1 cut(s)	699
Msp20I	TGGCCA	1 cut(s)	791
MspCI	CTTAAG	1 cut(s)	179
MspI	CCGG	2 cut(s)	90, 458
MspR9I	CCNGG	1 cut(s)	543
Mva1269I	GAATGC	2 cut(s)	190, 326
MvaI	CCWGG	1 cut(s)	543
MwoI	GCNNNNNNNGC	3 cut(s)	271, 317, 878
NdeII	GATC	3 cut(s)	299, 416, 825
NlaIII	CATG	5 cut(s)	308, 412, 733, 772, 836
NmuCI	GTSAC	1 cut(s)	404
NspI	RCATGY	1 cut(s)	733
NspV	TTCGAA	1 cut(s)	126
OliI	CACNNNNGTG	1 cut(s)	699
PaeI	GCATGC	1 cut(s)	733
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PctI	GAATGC	2 cut(s)	190, 326
PdmI	GAANNNNTTC	1 cut(s)	487
PfeI	GAWTC	1 cut(s)	269
PfoI	TCCNGGA	1 cut(s)	541
PkrI	GCNGC	1 cut(s)	264
PleI	GAGTC	3 cut(s)	278, 337, 707
PpsI	GAGTC	3 cut(s)	278, 337, 707
Psp124BI	GAGCTC	1 cut(s)	801
Psp1406I	AACGTT	1 cut(s)	633
Psp6I	CCWGG	1 cut(s)	541
PspGI	CCWGG	1 cut(s)	541
PstNI	CAGNNNCTG	1 cut(s)	563
PsuI	RGATCY	1 cut(s)	416
RsaI	GTAC	2 cut(s)	161, 596
RsaNI	GTAC	2 cut(s)	160, 595
RseI	CAYNNNNRTG	1 cut(s)	699
SacI	GAGCTC	1 cut(s)	801
SaqAI	TTAA	2 cut(s)	180, 705
SatI	GCNGC	1 cut(s)	263
Sau3AI	GATC	3 cut(s)	299, 416, 825
SchI	GAGTC	3 cut(s)	278, 337, 707
ScrFI	CCNGG	1 cut(s)	543
SduI	GDGCHC	1 cut(s)	801
SfaNI	GCATC	1 cut(s)	7
SfuI	TTCGAA	1 cut(s)	126
SmiMI	CAYNNNNRTG	1 cut(s)	699
SmlI	CTYRAG	3 cut(s)	179, 512, 677
SmoI	CTYRAG	3 cut(s)	179, 512, 677
SphI	GCATGC	1 cut(s)	733
Sse9I	AATT	5 cut(s)	391, 483, 618, 654, 850
SsiI	CCGC	3 cut(s)	5, 290, 311
SspMI	CTAG	2 cut(s)	399, 548
SstI	GAGCTC	1 cut(s)	801
StyD4I	CCNGG	1 cut(s)	541
StyI	CCWWGG	1 cut(s)	792
TaaI	ACNGT	2 cut(s)	137, 599
TaiI	ACGT	3 cut(s)	30, 48, 636
TaqI	TCGA	3 cut(s)	126, 646, 892
TasI	AATT	5 cut(s)	391, 483, 618, 654, 850
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	2 cut(s)	180, 705
Tru9I	TTAA	2 cut(s)	180, 705
TscAI	CASTG	3 cut(s)	140, 208, 214
TseFI	GTSAC	1 cut(s)	404
TseI	GCWGC	1 cut(s)	262
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	1 cut(s)	384
TspGWI	ACGGA	2 cut(s)	86, 597
TspRI	CASTG	3 cut(s)	140, 208, 214
Vha464I	CTTAAG	1 cut(s)	179
XapI	RAATTY	2 cut(s)	391, 483
XceI	RCATGY	1 cut(s)	733
XmiI	GTMKAC	1 cut(s)	508
XmnI	GAANNNNTTC	1 cut(s)	487
XspI	CTAG	2 cut(s)	399, 548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.