Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0010670

Physical Location & Seq

Genomic Coordinates Forward (+)

2853017 .. 2855452

Gene Structure 2436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1039000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCGGAAGAAGGTGATGCTTTTTATGTTGTTCGGAAGGGCAACGTCATTGGCATTTACAAAAACTTTATGGATTGCCAAAGCCAAGCCGGTTCTTCGGTATGCAATCCTTCTGTAAGTGTGTTCAAAGGCCACTGTTTGCCTAAGGAGGCTGAGGAGTACCTCGTCTCGCACGGCCTTAAGAATGTTTCTTATACTATCAGTGCCAGTGATGTGAAAGATGACGATCTTTTTGGAAAGCTCGTTGCTTGTCCTTACCAGCAGCCAGATTCTCCTGCCAAGGACTCACCGCCAAAGAGATCGCATGAGGTGGCCGGCGCTACTGCATTCCCAATCTCTCAGACTCAGAGAAAGCATTTCAAATCTGATGATCAACCTGAAGCTCTTGAAAATTCATCCAGTTGTGACATGATTGGATCTACTCCATTCCCAATATCTCAGAGGAAGCATTTCACACCGGATAACTACATTGAAAATCTAGGAATTTCTTCTTTTTGTCAAACATGTATGCTTGAGTTTGATGGTGCTTCAAAAGGAAATCCTGGACAATCTGGTGCAGGAGCTGTGCTACGAGCTGAAGACGGAAGCGCTGTGTACCGCTTGCGTGAAGGGGTGGGAATTGCAACAAATAACGTTGCAGAATATCGAGCTGTAATTCTGGGATTGAAATATGCTCTTGAGAAGGGATATAAACACATTCGGGTTAAAGGAGACTCTAAACTTGTCTGCATGCAGGTCCAAGGTCTCTGGAAAACAAAAAATCCGAATATGGTTGACCTGTGTGAAGTGGCCAAGGAGCTGAAAGACATGTTTAAGTCATTTGAGATCAATCATGTTCTTAGGGAATACAATTCTGAGGCTGACGTTCAAGCAAATCAAGCAATAAATCTTCGAGATGGACAAGTTGAAGTGGATTGGAATGGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cauli_VI RVT_3

Protein Analysis

310

Amino Acids

33.99

Weight (kDa)

5.85

Isoelectric Point (pI)

35.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	173 - 294	2e-24	Reverse transcriptase-like
RNase_H	PF00075	173 - 293	9e-10	RNase H

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01410 AT3G01410
fragaria_vesca	FvH4_6g50271 FvH4_6g50271 FvH4_6g50271 FvH4_6g50271 FvH4_6g50271
malus_domestica	MD09G1038000.v1.1 MD17G1039000.v1.1
prunus_persica	Prupe.3G280000_v2.0.a1
pyrus_communis	pycom111g03030 pycom17g03520
rosa_chinensis	RchiOBHm_Chr2g0170591
rosa_laevigata	RLG00000021966
rosa_roxburghii	Rroxscaffold_2G00081200
rosa_samantha	Rh2AG621700 Rh2BG633100 Rh2CG602400 Rh2DG645900
rosa_wichuraiana	Rw2G051550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	724
AciI	CCGC	3 cut(s)	5, 290, 598
AclI	AACGTT	1 cut(s)	633
AclWI	GGATC	1 cut(s)	424
AcoI	YGGCCR	2 cut(s)	312, 789
AcsI	RAATTY	2 cut(s)	391, 483
AcuI	CTGAAG	2 cut(s)	399, 597
AfaI	GTAC	2 cut(s)	161, 596
AfeI	AGCGCT	1 cut(s)	589
AflII	CTTAAG	1 cut(s)	179
AflIII	ACRYGT	2 cut(s)	503, 807
AgsI	TTSAA	8 cut(s)	127, 361, 389, 473, 531, 667, 869, 908
AjnI	CCWGG	1 cut(s)	541
AluBI	AGCT	6 cut(s)	241, 383, 563, 575, 650, 799
AluI	AGCT	6 cut(s)	241, 383, 563, 575, 650, 799
Alw26I	GTCTC	3 cut(s)	172, 705, 749
AlwI	GGATC	1 cut(s)	424
AlwNI	CAGNNNCTG	1 cut(s)	563
Aor51HI	AGCGCT	1 cut(s)	589
AoxI	GGCC	4 cut(s)	130, 175, 312, 789
ApeKI	GCWGC	1 cut(s)	262
ApoI	RAATTY	2 cut(s)	391, 483
ArsI	GACNNNNNNTTYG	2 cut(s)	215, 247
Asp700I	GAANNNNTTC	2 cut(s)	449, 487
AspLEI	GCGC	2 cut(s)	320, 590
AspS9I	GGNCC	1 cut(s)	736
AsuHPI	GGTGA	2 cut(s)	26, 279
AvaII	GGWCC	1 cut(s)	736
AxyI	CCTNAGG	1 cut(s)	144
BalI	TGGCCA	1 cut(s)	791
BbsI	GAAGAC	1 cut(s)	585
BbvCI	CCTCAGC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	274
BccI	CCATC	2 cut(s)	515, 890
BceAI	ACGGC	1 cut(s)	190
BciT130I	CCWGG	1 cut(s)	543
BclI	TGATCA	1 cut(s)	370
BcoDI	GTCTC	3 cut(s)	172, 705, 749
BfaI	CTAG	1 cut(s)	479
BfoI	RGCGCY	2 cut(s)	321, 591
BfrI	CTTAAG	1 cut(s)	179
BfuAI	ACCTGC	1 cut(s)	724
BisI	GCNGC	1 cut(s)	263
BlsI	GCNGC	1 cut(s)	264
Bme1390I	CCNGG	1 cut(s)	543
Bme18I	GGWCC	1 cut(s)	736
BmgT120I	GGNCC	1 cut(s)	736
BmrFI	CCNGG	1 cut(s)	543
BmsI	GCATC	1 cut(s)	7
BpiI	GAAGAC	1 cut(s)	585
Bpu10I	CCTNAGC	1 cut(s)	153
BpuEI	CTTGAG	2 cut(s)	533, 698
BsaBI	GATNNNNATC	1 cut(s)	225
BsaI	GGTCTC	1 cut(s)	749
BsaJI	CCNNGG	3 cut(s)	279, 739, 792
BsaWI	WCCGGW	1 cut(s)	457
Bse118I	RCCGGY	2 cut(s)	89, 314
Bse1I	ACTGG	2 cut(s)	207, 399
Bse21I	CCTNAGG	1 cut(s)	144
Bse8I	GATNNNNATC	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	543
BseDI	CCNNGG	3 cut(s)	279, 739, 792
BseGI	GGATG	1 cut(s)	395
BseJI	GATNNNNATC	1 cut(s)	225
BseMII	CTCAG	5 cut(s)	144, 353, 359, 452, 846
BseNI	ACTGG	2 cut(s)	207, 399
BseRI	GAGGAG	1 cut(s)	170
BseXI	GCAGC	1 cut(s)	274
BsgI	GTGCAG	1 cut(s)	576
BshFI	GGCC	4 cut(s)	132, 177, 314, 791
BsiSI	CCGG	3 cut(s)	90, 315, 458
BsmAI	GTCTC	3 cut(s)	172, 705, 749
BsmBI	CGTCTC	1 cut(s)	172
BsmI	GAATGC	1 cut(s)	326
BsnI	GGCC	4 cut(s)	132, 177, 314, 791
Bso31I	GGTCTC	1 cut(s)	749
Bsp143I	GATC	5 cut(s)	226, 299, 370, 416, 825
BspACI	CCGC	3 cut(s)	5, 290, 598
BspANI	GGCC	4 cut(s)	132, 177, 314, 791
BspCNI	CTCAG	5 cut(s)	145, 352, 358, 451, 847
BspMI	ACCTGC	1 cut(s)	724
BspPI	GGATC	1 cut(s)	424
BspTI	CTTAAG	1 cut(s)	179
BspTNI	GGTCTC	1 cut(s)	749
BsrFI	RCCGGY	2 cut(s)	89, 314
BsrI	ACTGG	2 cut(s)	207, 399
BssAI	RCCGGY	2 cut(s)	89, 314
BssECI	CCNNGG	3 cut(s)	279, 739, 792
BssMI	GATC	5 cut(s)	226, 299, 370, 416, 825
BssT1I	CCWWGG	3 cut(s)	279, 739, 792
Bst2UI	CCWGG	1 cut(s)	543
Bst4CI	ACNGT	1 cut(s)	137
BstAFI	CTTAAG	1 cut(s)	179
BstC8I	GCNNGC	3 cut(s)	316, 602, 731
BstDEI	CTNAG	7 cut(s)	144, 153, 339, 345, 438, 839, 855
BstF5I	GGATG	1 cut(s)	395
BstH2I	RGCGCY	2 cut(s)	321, 591
BstHHI	GCGC	2 cut(s)	320, 590
BstKTI	GATC	5 cut(s)	229, 302, 373, 419, 828
BstMAI	GTCTC	3 cut(s)	172, 705, 749
BstMBI	GATC	5 cut(s)	226, 299, 370, 416, 825
BstMWI	GCNNNNNNNGC	1 cut(s)	878
BstNI	CCWGG	1 cut(s)	543
BstNSI	RCATGY	3 cut(s)	507, 733, 811
BstSCI	CCNGG	1 cut(s)	541
BstV1I	GCAGC	1 cut(s)	274
BstV2I	GAAGAC	1 cut(s)	585
BstX2I	RGATCY	1 cut(s)	416
BstYI	RGATCY	1 cut(s)	416
Bsu36I	CCTNAGG	1 cut(s)	144
BsuRI	GGCC	4 cut(s)	132, 177, 314, 791
BtsCI	GGATG	1 cut(s)	395
BtsIMutI	CAGTG	3 cut(s)	133, 208, 214
BveI	ACCTGC	1 cut(s)	724
Cac8I	GCNNGC	3 cut(s)	316, 602, 731
CaiI	CAGNNNCTG	1 cut(s)	563
CfoI	GCGC	2 cut(s)	320, 590
Cfr10I	RCCGGY	2 cut(s)	89, 314
Cfr13I	GGNCC	1 cut(s)	736
Csp6I	GTAC	2 cut(s)	160, 595
CviAII	CATG	6 cut(s)	305, 409, 504, 730, 808, 833
CviQI	GTAC	2 cut(s)	160, 595
DdeI	CTNAG	7 cut(s)	144, 153, 339, 345, 438, 839, 855
DpnI	GATC	5 cut(s)	228, 301, 372, 418, 827
DpnII	GATC	5 cut(s)	226, 299, 370, 416, 825
EaeI	YGGCCR	2 cut(s)	312, 789
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	3 cut(s)	279, 739, 792
Eco31I	GGTCTC	1 cut(s)	749
Eco47I	GGWCC	1 cut(s)	736
Eco47III	AGCGCT	1 cut(s)	589
Eco57I	CTGAAG	2 cut(s)	399, 597
Eco81I	CCTNAGG	1 cut(s)	144
EcoRII	CCWGG	1 cut(s)	541
EcoT14I	CCWWGG	3 cut(s)	279, 739, 792
ErhI	CCWWGG	3 cut(s)	279, 739, 792
Esp3I	CGTCTC	1 cut(s)	172
FaeI	CATG	6 cut(s)	308, 412, 507, 733, 811, 836
FatI	CATG	6 cut(s)	304, 408, 503, 729, 807, 832
FbaI	TGATCA	1 cut(s)	370
Fnu4HI	GCNGC	1 cut(s)	263
FokI	GGATG	1 cut(s)	382
Fsp4HI	GCNGC	1 cut(s)	263
FspBI	CTAG	1 cut(s)	479
GlaI	GCGC	2 cut(s)	319, 589
GluI	GCNGC	1 cut(s)	263
HaeII	RGCGCY	2 cut(s)	321, 591
HaeIII	GGCC	4 cut(s)	132, 177, 314, 791
HapII	CCGG	3 cut(s)	90, 315, 458
HhaI	GCGC	2 cut(s)	320, 590
Hin1II	CATG	6 cut(s)	308, 412, 507, 733, 811, 836
Hin6I	GCGC	2 cut(s)	318, 588
HinP1I	GCGC	2 cut(s)	318, 588
HincII	GTYRAC	1 cut(s)	775
HindII	GTYRAC	1 cut(s)	775
HinfI	GANTC	4 cut(s)	269, 284, 343, 713
HpaII	CCGG	3 cut(s)	90, 315, 458
HphI	GGTGA	2 cut(s)	26, 279
Hpy166II	GTNNAC	2 cut(s)	595, 775
Hpy188I	TCNGA	7 cut(s)	36, 342, 348, 367, 441, 765, 856
Hpy188III	TCNNGA	4 cut(s)	386, 677, 748, 893
Hpy8I	GTNNAC	2 cut(s)	595, 775
HpyAV	CCTTC	5 cut(s)	5, 31, 120, 602, 676
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4IV	ACGT	3 cut(s)	45, 633, 864
HpyCH4V	TGCA	7 cut(s)	105, 326, 557, 623, 638, 729, 733
HpyF10VI	GCNNNNNNNGC	1 cut(s)	878
HpyF3I	CTNAG	7 cut(s)	144, 153, 339, 345, 438, 839, 855
HpySE526I	ACGT	3 cut(s)	45, 633, 864
Hsp92II	CATG	6 cut(s)	308, 412, 507, 733, 811, 836
HspAI	GCGC	2 cut(s)	318, 588
KroI	GCCGGC	1 cut(s)	314
KroNI	GCCGGC	1 cut(s)	316
Ksp22I	TGATCA	1 cut(s)	370
Kzo9I	GATC	5 cut(s)	226, 299, 370, 416, 825
LmnI	GCTCC	2 cut(s)	560, 796
Lsp1109I	GCAGC	1 cut(s)	274
LweI	GCATC	1 cut(s)	7
MaeI	CTAG	1 cut(s)	479
MaeII	ACGT	3 cut(s)	45, 633, 864
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	5 cut(s)	228, 301, 372, 418, 827
MboI	GATC	5 cut(s)	226, 299, 370, 416, 825
MboII	GAAGA	5 cut(s)	20, 87, 480, 590, 881
MflI	RGATCY	1 cut(s)	416
MlsI	TGGCCA	1 cut(s)	791
MluCI	AATT	5 cut(s)	391, 483, 618, 654, 850
MluNI	TGGCCA	1 cut(s)	791
MlyI	GAGTC	3 cut(s)	278, 337, 707
MnlI	CCTC	6 cut(s)	142, 148, 173, 301, 435, 850
Mox20I	TGGCCA	1 cut(s)	791
MroNI	GCCGGC	1 cut(s)	314
MroXI	GAANNNNTTC	2 cut(s)	449, 487
MscI	TGGCCA	1 cut(s)	791
MseI	TTAA	3 cut(s)	180, 705, 813
Msp20I	TGGCCA	1 cut(s)	791
MspCI	CTTAAG	1 cut(s)	179
MspI	CCGG	3 cut(s)	90, 315, 458
MspR9I	CCNGG	1 cut(s)	543
Mva1269I	GAATGC	1 cut(s)	326
MvaI	CCWGG	1 cut(s)	543
MwoI	GCNNNNNNNGC	1 cut(s)	878
NaeI	GCCGGC	1 cut(s)	316
NdeII	GATC	5 cut(s)	226, 299, 370, 416, 825
NgoMIV	GCCGGC	1 cut(s)	314
NlaIII	CATG	6 cut(s)	308, 412, 507, 733, 811, 836
NmuCI	GTSAC	1 cut(s)	404
NspI	RCATGY	3 cut(s)	507, 733, 811
PaeI	GCATGC	1 cut(s)	733
PciI	ACATGT	2 cut(s)	503, 807
PctI	GAATGC	1 cut(s)	326
PdiI	GCCGGC	1 cut(s)	316
PdmI	GAANNNNTTC	2 cut(s)	449, 487
PfeI	GAWTC	1 cut(s)	269
PfoI	TCCNGGA	1 cut(s)	541
PkrI	GCNGC	1 cut(s)	264
PleI	GAGTC	3 cut(s)	278, 337, 707
PpsI	GAGTC	3 cut(s)	278, 337, 707
PscI	ACATGT	2 cut(s)	503, 807
Psp1406I	AACGTT	1 cut(s)	633
Psp6I	CCWGG	1 cut(s)	541
PspGI	CCWGG	1 cut(s)	541
PspPI	GGNCC	1 cut(s)	736
PstNI	CAGNNNCTG	1 cut(s)	563
PsuI	RGATCY	1 cut(s)	416
RsaI	GTAC	2 cut(s)	161, 596
RsaNI	GTAC	2 cut(s)	160, 595
SaqAI	TTAA	3 cut(s)	180, 705, 813
SatI	GCNGC	1 cut(s)	263
Sau3AI	GATC	5 cut(s)	226, 299, 370, 416, 825
Sau96I	GGNCC	1 cut(s)	736
SchI	GAGTC	3 cut(s)	278, 337, 707
ScrFI	CCNGG	1 cut(s)	543
SfaNI	GCATC	1 cut(s)	7
SinI	GGWCC	1 cut(s)	736
SmlI	CTYRAG	3 cut(s)	179, 512, 677
SmoI	CTYRAG	3 cut(s)	179, 512, 677
SphI	GCATGC	1 cut(s)	733
Sse9I	AATT	5 cut(s)	391, 483, 618, 654, 850
SsiI	CCGC	3 cut(s)	5, 290, 598
SspMI	CTAG	1 cut(s)	479
StyD4I	CCNGG	1 cut(s)	541
StyI	CCWWGG	3 cut(s)	279, 739, 792
TaaI	ACNGT	1 cut(s)	137
TaiI	ACGT	3 cut(s)	48, 636, 867
TaqI	TCGA	2 cut(s)	646, 892
TasI	AATT	5 cut(s)	391, 483, 618, 654, 850
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	3 cut(s)	180, 705, 813
Tru9I	TTAA	3 cut(s)	180, 705, 813
TscAI	CASTG	3 cut(s)	140, 208, 214
TseFI	GTSAC	1 cut(s)	404
TseI	GCWGC	1 cut(s)	262
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	1 cut(s)	384
TspGWI	ACGGA	1 cut(s)	597
TspRI	CASTG	3 cut(s)	140, 208, 214
Vha464I	CTTAAG	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	736
XapI	RAATTY	2 cut(s)	391, 483
XceI	RCATGY	3 cut(s)	507, 733, 811
XmnI	GAANNNNTTC	2 cut(s)	449, 487
XspI	CTAG	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.