Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0010670

Physical Location & Seq

Genomic Coordinates Forward (+)

2338166 .. 2340167

Gene Structure 2002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g03520.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGCGGAAGAAGGTGATGCTTTTTATGTTGTTCGGAAGGGGAACGTCATTGGCATTTACAAAAACTTTACGGATTGCCAAAGCCAAGCCGGTTCTTCGGTATGCAATCCTTCTGTAAGTGTGTTCAAAGGCCACTGTTTGCCTAAGGAAGCTGAGGAGTACCTCGTCTCGCACGGCCTTAAGAATGCTTCATATACTATCAGTGCCAGTGATGTGAAGGATGACGATCTTTTTGGAAAGCTCGTTGCTTGTCCTTACCAGCAGCCAGATTCCCCTGCCAAGGACTCACCGCCAAAGAGATCGCATGAGGTGGCCGGCGCTACTGCATTCCCAATCTCTCAGACTCAGAGAAAGCATTTCAAATCTGATAATCAACCTGAAGCTCTTGAAAATTCATCTAGTTGTCAGCCAGATTCTTCTATAGTAAAATCAGATGCTAAGGACTCACCATTGCAGGACATGATTGGATCTACTCCATTCTCAATATCTCAGAGGAAGCATTTCACGCCGGATAACTACATTGAAAATCTAGGAATTTCTTCTTTTTGTCAAACCTGTATGCTTGAGTTTGATGGTGCTTCAAAAGGAAATCCTGGACAATCTGGTGCAGGAGCTGTGCTACGAGCTGAAGACGGAAGCGCTGTGTACCACTTGCGTGAAGGGGTGGGAATTGCAACAAATAACTTTGCAGAATATCGAGCTGTAATTCTGGGATTGAAATATGCTCTTGAGAAGGGATATAAACACATTCGGGTTAAAGGAGACTCCAAACTTGTCTGCATGCAGGTCCAAGGTCTCTGGAAAACAAAAAATCCGAATATGGTTGACCTGTGTGAAGTGGCCAAGGAGCTGAAAGACATGTTTACGTCATTTGAGATCAATCATGTTCTTAGGGAATACAATTCTGAGGCTGATGTTCAAGCAAATCGAGCAATAAATCTTCGAGATGGACAAGTTGAAGTGGATTGGAATGGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cauli_VI RVT_3

Protein Analysis

327

Amino Acids

35.75

Weight (kDa)

5.8

Isoelectric Point (pI)

38.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01410 AT3G01410
fragaria_vesca	FvH4_6g50271 FvH4_6g50271 FvH4_6g50271 FvH4_6g50271 FvH4_6g50271
malus_domestica	MD09G1038000.v1.1 MD17G1039000.v1.1
prunus_persica	Prupe.3G280000_v2.0.a1
pyrus_communis	pycom111g03030 pycom17g03520
rosa_chinensis	RchiOBHm_Chr2g0170591
rosa_laevigata	RLG00000021966
rosa_roxburghii	Rroxscaffold_2G00081200
rosa_samantha	Rh2AG621700 Rh2BG633100 Rh2CG602400 Rh2DG645900
rosa_wichuraiana	Rw2G051550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	775
AciI	CCGC	2 cut(s)	5, 290
AclWI	GGATC	1 cut(s)	475
AcoI	YGGCCR	2 cut(s)	312, 840
AcsI	RAATTY	2 cut(s)	391, 534
AcuI	CTGAAG	2 cut(s)	399, 648
AfaI	GTAC	2 cut(s)	161, 647
AfeI	AGCGCT	1 cut(s)	640
AfiI	CCNNNNNNNGG	1 cut(s)	280
AflII	CTTAAG	1 cut(s)	179
AflIII	ACRYGT	1 cut(s)	858
AgsI	TTSAA	8 cut(s)	127, 361, 389, 524, 582, 718, 920, 959
AjnI	CCWGG	1 cut(s)	592
AleI	CACNNNNGTG	1 cut(s)	654
AluBI	AGCT	7 cut(s)	152, 241, 383, 614, 626, 701, 850
AluI	AGCT	7 cut(s)	152, 241, 383, 614, 626, 701, 850
Alw26I	GTCTC	3 cut(s)	172, 756, 800
AlwI	GGATC	1 cut(s)	475
AlwNI	CAGNNNCTG	1 cut(s)	614
Aor51HI	AGCGCT	1 cut(s)	640
AoxI	GGCC	4 cut(s)	130, 175, 312, 840
ApeKI	GCWGC	1 cut(s)	262
ApoI	RAATTY	2 cut(s)	391, 534
ArsI	GACNNNNNNTTYG	2 cut(s)	215, 247
Asp700I	GAANNNNTTC	2 cut(s)	500, 538
AspLEI	GCGC	2 cut(s)	320, 641
AspS9I	GGNCC	1 cut(s)	787
AsuHPI	GGTGA	3 cut(s)	26, 279, 438
AvaII	GGWCC	1 cut(s)	787
AxyI	CCTNAGG	1 cut(s)	144
BalI	TGGCCA	1 cut(s)	842
BbsI	GAAGAC	1 cut(s)	636
BbvCI	CCTCAGC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	274
BccI	CCATC	2 cut(s)	566, 941
BceAI	ACGGC	1 cut(s)	190
BciT130I	CCWGG	1 cut(s)	594
BcoDI	GTCTC	3 cut(s)	172, 756, 800
BfaI	CTAG	2 cut(s)	399, 530
BfmI	CTRYAG	1 cut(s)	420
BfoI	RGCGCY	2 cut(s)	321, 642
BfrI	CTTAAG	1 cut(s)	179
BfuAI	ACCTGC	1 cut(s)	775
BisI	GCNGC	1 cut(s)	263
BlsI	GCNGC	1 cut(s)	264
Bme1390I	CCNGG	1 cut(s)	594
Bme18I	GGWCC	1 cut(s)	787
BmgT120I	GGNCC	1 cut(s)	787
BmrFI	CCNGG	1 cut(s)	594
BmsI	GCATC	2 cut(s)	7, 424
BpiI	GAAGAC	1 cut(s)	636
Bpu10I	CCTNAGC	2 cut(s)	153, 438
BpuEI	CTTGAG	2 cut(s)	584, 749
BsaBI	GATNNNNATC	1 cut(s)	225
BsaI	GGTCTC	1 cut(s)	800
BsaJI	CCNNGG	3 cut(s)	279, 790, 843
Bsc4I	CCNNNNNNNGG	1 cut(s)	280
Bse118I	RCCGGY	2 cut(s)	89, 314
Bse1I	ACTGG	1 cut(s)	207
Bse21I	CCTNAGG	1 cut(s)	144
Bse3DI	GCAATG	1 cut(s)	449
Bse8I	GATNNNNATC	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	594
BseDI	CCNNGG	3 cut(s)	279, 790, 843
BseGI	GGATG	1 cut(s)	226
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	1 cut(s)	280
BseMI	GCAATG	1 cut(s)	449
BseMII	CTCAG	5 cut(s)	144, 353, 359, 503, 897
BseNI	ACTGG	1 cut(s)	207
BseRI	GAGGAG	1 cut(s)	170
BseXI	GCAGC	1 cut(s)	274
BsgI	GTGCAG	1 cut(s)	627
BshFI	GGCC	4 cut(s)	132, 177, 314, 842
BsiSI	CCGG	3 cut(s)	90, 315, 509
BslI	CCNNNNNNNGG	1 cut(s)	280
BsmAI	GTCTC	3 cut(s)	172, 756, 800
BsmBI	CGTCTC	1 cut(s)	172
BsmI	GAATGC	2 cut(s)	190, 326
BsnI	GGCC	4 cut(s)	132, 177, 314, 842
Bso31I	GGTCTC	1 cut(s)	800
Bsp143I	GATC	4 cut(s)	226, 299, 467, 876
BspACI	CCGC	2 cut(s)	5, 290
BspANI	GGCC	4 cut(s)	132, 177, 314, 842
BspCNI	CTCAG	5 cut(s)	145, 352, 358, 502, 898
BspMI	ACCTGC	1 cut(s)	775
BspPI	GGATC	1 cut(s)	475
BspTI	CTTAAG	1 cut(s)	179
BspTNI	GGTCTC	1 cut(s)	800
BsrDI	GCAATG	1 cut(s)	449
BsrFI	RCCGGY	2 cut(s)	89, 314
BsrI	ACTGG	1 cut(s)	207
BssAI	RCCGGY	2 cut(s)	89, 314
BssECI	CCNNGG	3 cut(s)	279, 790, 843
BssMI	GATC	4 cut(s)	226, 299, 467, 876
BssT1I	CCWWGG	3 cut(s)	279, 790, 843
Bst2UI	CCWGG	1 cut(s)	594
Bst4CI	ACNGT	1 cut(s)	137
BstAFI	CTTAAG	1 cut(s)	179
BstC8I	GCNNGC	2 cut(s)	316, 782
BstDEI	CTNAG	8 cut(s)	144, 153, 339, 345, 438, 489, 890, 906
BstF5I	GGATG	1 cut(s)	226
BstH2I	RGCGCY	2 cut(s)	321, 642
BstHHI	GCGC	2 cut(s)	320, 641
BstKTI	GATC	4 cut(s)	229, 302, 470, 879
BstMAI	GTCTC	3 cut(s)	172, 756, 800
BstMBI	GATC	4 cut(s)	226, 299, 467, 876
BstMWI	GCNNNNNNNGC	2 cut(s)	505, 929
BstNI	CCWGG	1 cut(s)	594
BstNSI	RCATGY	2 cut(s)	784, 862
BstSCI	CCNGG	1 cut(s)	592
BstSFI	CTRYAG	1 cut(s)	420
BstV1I	GCAGC	1 cut(s)	274
BstV2I	GAAGAC	1 cut(s)	636
BstX2I	RGATCY	1 cut(s)	467
BstYI	RGATCY	1 cut(s)	467
Bsu36I	CCTNAGG	1 cut(s)	144
BsuRI	GGCC	4 cut(s)	132, 177, 314, 842
BtsCI	GGATG	1 cut(s)	226
BtsIMutI	CAGTG	3 cut(s)	133, 208, 214
BveI	ACCTGC	1 cut(s)	775
Cac8I	GCNNGC	2 cut(s)	316, 782
CaiI	CAGNNNCTG	1 cut(s)	614
CfoI	GCGC	2 cut(s)	320, 641
Cfr10I	RCCGGY	2 cut(s)	89, 314
Cfr13I	GGNCC	1 cut(s)	787
Csp6I	GTAC	2 cut(s)	160, 646
CviAII	CATG	5 cut(s)	305, 460, 781, 859, 884
CviQI	GTAC	2 cut(s)	160, 646
DdeI	CTNAG	8 cut(s)	144, 153, 339, 345, 438, 489, 890, 906
DpnI	GATC	4 cut(s)	228, 301, 469, 878
DpnII	GATC	4 cut(s)	226, 299, 467, 876
EaeI	YGGCCR	2 cut(s)	312, 840
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	3 cut(s)	279, 790, 843
Eco31I	GGTCTC	1 cut(s)	800
Eco47I	GGWCC	1 cut(s)	787
Eco47III	AGCGCT	1 cut(s)	640
Eco57I	CTGAAG	2 cut(s)	399, 648
Eco81I	CCTNAGG	1 cut(s)	144
EcoRII	CCWGG	1 cut(s)	592
EcoT14I	CCWWGG	3 cut(s)	279, 790, 843
ErhI	CCWWGG	3 cut(s)	279, 790, 843
Esp3I	CGTCTC	1 cut(s)	172
FaeI	CATG	5 cut(s)	308, 463, 784, 862, 887
FatI	CATG	5 cut(s)	304, 459, 780, 858, 883
Fnu4HI	GCNGC	1 cut(s)	263
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	1 cut(s)	263
FspBI	CTAG	2 cut(s)	399, 530
GlaI	GCGC	2 cut(s)	319, 640
GluI	GCNGC	1 cut(s)	263
HaeII	RGCGCY	2 cut(s)	321, 642
HaeIII	GGCC	4 cut(s)	132, 177, 314, 842
HapII	CCGG	3 cut(s)	90, 315, 509
HhaI	GCGC	2 cut(s)	320, 641
Hin1II	CATG	5 cut(s)	308, 463, 784, 862, 887
Hin6I	GCGC	2 cut(s)	318, 639
HinP1I	GCGC	2 cut(s)	318, 639
HincII	GTYRAC	1 cut(s)	826
HindII	GTYRAC	1 cut(s)	826
HinfI	GANTC	6 cut(s)	269, 284, 343, 413, 443, 764
HpaII	CCGG	3 cut(s)	90, 315, 509
HphI	GGTGA	3 cut(s)	26, 279, 438
Hpy166II	GTNNAC	3 cut(s)	646, 826, 864
Hpy188I	TCNGA	8 cut(s)	36, 342, 348, 367, 433, 492, 816, 907
Hpy188III	TCNNGA	4 cut(s)	386, 728, 799, 944
Hpy8I	GTNNAC	3 cut(s)	646, 826, 864
HpyAV	CCTTC	6 cut(s)	5, 31, 120, 211, 653, 727
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4IV	ACGT	2 cut(s)	45, 866
HpyCH4V	TGCA	8 cut(s)	105, 326, 454, 608, 674, 689, 780, 784
HpyF10VI	GCNNNNNNNGC	2 cut(s)	505, 929
HpyF3I	CTNAG	8 cut(s)	144, 153, 339, 345, 438, 489, 890, 906
HpySE526I	ACGT	2 cut(s)	45, 866
Hsp92II	CATG	5 cut(s)	308, 463, 784, 862, 887
HspAI	GCGC	2 cut(s)	318, 639
KroI	GCCGGC	1 cut(s)	314
KroNI	GCCGGC	1 cut(s)	316
Kzo9I	GATC	4 cut(s)	226, 299, 467, 876
LmnI	GCTCC	2 cut(s)	611, 847
Lsp1109I	GCAGC	1 cut(s)	274
LweI	GCATC	2 cut(s)	7, 424
MaeI	CTAG	2 cut(s)	399, 530
MaeII	ACGT	2 cut(s)	45, 866
MalI	GATC	4 cut(s)	228, 301, 469, 878
MboI	GATC	4 cut(s)	226, 299, 467, 876
MboII	GAAGA	6 cut(s)	20, 87, 408, 531, 641, 932
MflI	RGATCY	1 cut(s)	467
MlsI	TGGCCA	1 cut(s)	842
MluCI	AATT	5 cut(s)	391, 534, 669, 705, 901
MluNI	TGGCCA	1 cut(s)	842
MlyI	GAGTC	4 cut(s)	278, 337, 437, 758
MnlI	CCTC	5 cut(s)	148, 173, 301, 486, 901
Mox20I	TGGCCA	1 cut(s)	842
MroNI	GCCGGC	1 cut(s)	314
MroXI	GAANNNNTTC	2 cut(s)	500, 538
MscI	TGGCCA	1 cut(s)	842
MseI	TTAA	2 cut(s)	180, 756
MslI	CAYNNNNRTG	1 cut(s)	654
Msp20I	TGGCCA	1 cut(s)	842
MspCI	CTTAAG	1 cut(s)	179
MspI	CCGG	3 cut(s)	90, 315, 509
MspR9I	CCNGG	1 cut(s)	594
Mva1269I	GAATGC	2 cut(s)	190, 326
MvaI	CCWGG	1 cut(s)	594
MwoI	GCNNNNNNNGC	2 cut(s)	505, 929
NaeI	GCCGGC	1 cut(s)	316
NdeII	GATC	4 cut(s)	226, 299, 467, 876
NgoMIV	GCCGGC	1 cut(s)	314
NlaIII	CATG	5 cut(s)	308, 463, 784, 862, 887
NspI	RCATGY	2 cut(s)	784, 862
OliI	CACNNNNGTG	1 cut(s)	654
PaeI	GCATGC	1 cut(s)	784
PciI	ACATGT	1 cut(s)	858
PctI	GAATGC	2 cut(s)	190, 326
PdiI	GCCGGC	1 cut(s)	316
PdmI	GAANNNNTTC	2 cut(s)	500, 538
PfeI	GAWTC	2 cut(s)	269, 413
PfoI	TCCNGGA	1 cut(s)	592
PkrI	GCNGC	1 cut(s)	264
PleI	GAGTC	4 cut(s)	278, 337, 437, 758
PpsI	GAGTC	4 cut(s)	278, 337, 437, 758
PscI	ACATGT	1 cut(s)	858
Psp6I	CCWGG	1 cut(s)	592
PspGI	CCWGG	1 cut(s)	592
PspPI	GGNCC	1 cut(s)	787
PstNI	CAGNNNCTG	1 cut(s)	614
PsuI	RGATCY	1 cut(s)	467
RsaI	GTAC	2 cut(s)	161, 647
RsaNI	GTAC	2 cut(s)	160, 646
RseI	CAYNNNNRTG	1 cut(s)	654
SaqAI	TTAA	2 cut(s)	180, 756
SatI	GCNGC	1 cut(s)	263
Sau3AI	GATC	4 cut(s)	226, 299, 467, 876
Sau96I	GGNCC	1 cut(s)	787
SchI	GAGTC	4 cut(s)	278, 337, 437, 758
ScrFI	CCNGG	1 cut(s)	594
SfaNI	GCATC	2 cut(s)	7, 424
SfcI	CTRYAG	1 cut(s)	420
SinI	GGWCC	1 cut(s)	787
SmiMI	CAYNNNNRTG	1 cut(s)	654
SmlI	CTYRAG	3 cut(s)	179, 563, 728
SmoI	CTYRAG	3 cut(s)	179, 563, 728
SphI	GCATGC	1 cut(s)	784
Sse9I	AATT	5 cut(s)	391, 534, 669, 705, 901
SsiI	CCGC	2 cut(s)	5, 290
SspMI	CTAG	2 cut(s)	399, 530
StyD4I	CCNGG	1 cut(s)	592
StyI	CCWWGG	3 cut(s)	279, 790, 843
TaaI	ACNGT	1 cut(s)	137
TaiI	ACGT	2 cut(s)	48, 869
TaqI	TCGA	3 cut(s)	697, 928, 943
TasI	AATT	5 cut(s)	391, 534, 669, 705, 901
TfiI	GAWTC	2 cut(s)	269, 413
Tru1I	TTAA	2 cut(s)	180, 756
Tru9I	TTAA	2 cut(s)	180, 756
TscAI	CASTG	3 cut(s)	140, 208, 214
TseI	GCWGC	1 cut(s)	262
TspDTI	ATGAA	2 cut(s)	180, 384
TspGWI	ACGGA	2 cut(s)	86, 648
TspRI	CASTG	3 cut(s)	140, 208, 214
Vha464I	CTTAAG	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	787
XapI	RAATTY	2 cut(s)	391, 534
XceI	RCATGY	2 cut(s)	784, 862
XmnI	GAANNNNTTC	2 cut(s)	500, 538
XspI	CTAG	2 cut(s)	399, 530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.