Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0010670

Physical Location & Seq

Genomic Coordinates Forward (+)

1831809 .. 1834588

Gene Structure 2780 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g03030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGCGGAAGAAGGTGATGCTTTTTATGTTGTTCGGAAAGGGGACGTTATTGGCATTTACAAAAACTTCACGGATTGCCAAAACCAAGCCGGTTCTTCGGTATGCAATCCTTCTGTAAGTGTGTTCGAAGGCCACTGTTTGCCGAAGGAGGCTGAGGAGTACCTCGTCGCCCACGGCCTTAAGAATGCTTCTTATACTATCAGTGCCGGTGATGTGAAAGATGACTCTCTTTTCGGAAAACTCGTTGCTTGCCCTATCCAGCAGCCAGATTCTCCTGCCATTGACTCACCGCCAAAGAGATCGCATGAGGCGGTTGGCGCTGCTGCATTCCCGAACTCTCAGACTCAGAGAAAGCATTTCAAATCTGATATTCAAACTGAAGCTGTTGCAAATTCATCTAGTTGTCAGCCGGATTCTTCTATAGTAAAATCAGCTGCCAAGGACTCACCACCTAAGAGATTGCAGGACATGATTGGATCTACTCCATTCCCGATATCTCAGAGGAGGCATTTCACACCGGATAACCACATTGAAAATCTTGGAATTTCTTCGTTTTGTCAAACCTGTATACTTGAGTTTGATGGTGCTTCAAAAGGAAATCCTGGATTAGCAGGTGCAGGAGCTGTGCTACGAGCTGAAGATGGAAGCGCTGTTCAAGGTCTCTGGAAAACGAAAAATCAGAATATGGCTGACCTGTGTGAAGTGGCCAAGGAGCTCAAAGACAAGTTTATGTCATTTGAGATCAATCATGTTCTTAGGGAATACAATTCTGAGGCTGATGTTCAAGCAAACCGAGCAATAAATCTTCGAGTTCGTGCTAATGTACCCGAACAAATTCAAGAAATTGAAACACTTGCAATGATCCAAAATGACGAGAAACGTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cauli_VI RVT_3

Protein Analysis

296

Amino Acids

32.11

Weight (kDa)

5.44

Isoelectric Point (pI)

52.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01410 AT3G01410
fragaria_vesca	FvH4_6g50271 FvH4_6g50271 FvH4_6g50271 FvH4_6g50271 FvH4_6g50271
malus_domestica	MD09G1038000.v1.1 MD17G1039000.v1.1
prunus_persica	Prupe.3G280000_v2.0.a1
pyrus_communis	pycom111g03030 pycom17g03520
rosa_chinensis	RchiOBHm_Chr2g0170591
rosa_laevigata	RLG00000021966
rosa_roxburghii	Rroxscaffold_2G00081200
rosa_samantha	Rh2AG621700 Rh2BG633100 Rh2CG602400 Rh2DG645900
rosa_wichuraiana	Rw2G051550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	602
Acc36I	ACCTGC	1 cut(s)	602
AccI	GTMKAC	1 cut(s)	568
AciI	CCGC	3 cut(s)	5, 290, 311
AclWI	GGATC	2 cut(s)	484, 856
AcoI	YGGCCR	1 cut(s)	705
AcsI	RAATTY	3 cut(s)	391, 543, 834
AcuI	CTGAAG	2 cut(s)	399, 657
AfaI	GTAC	2 cut(s)	161, 825
AfeI	AGCGCT	1 cut(s)	649
AflII	CTTAAG	1 cut(s)	179
AgsI	TTSAA	8 cut(s)	361, 374, 533, 591, 656, 785, 839, 848
AjnI	CCWGG	1 cut(s)	601
AloI	GAACNNNNNNTCC	2 cut(s)	636, 668
AluBI	AGCT	5 cut(s)	383, 434, 623, 635, 715
AluI	AGCT	5 cut(s)	383, 434, 623, 635, 715
Alw21I	GWGCWC	1 cut(s)	717
Alw26I	GTCTC	1 cut(s)	665
AlwI	GGATC	2 cut(s)	484, 856
AlwNI	CAGNNNCTG	1 cut(s)	623
Aor51HI	AGCGCT	1 cut(s)	649
AoxI	GGCC	3 cut(s)	130, 175, 705
ApeKI	GCWGC	4 cut(s)	262, 320, 323, 434
ApoI	RAATTY	3 cut(s)	391, 543, 834
ArsI	GACNNNNNNTTYG	2 cut(s)	215, 247
Asp700I	GAANNNNTTC	2 cut(s)	547, 834
AspLEI	GCGC	2 cut(s)	320, 650
AsuHPI	GGTGA	4 cut(s)	26, 221, 279, 438
AsuII	TTCGAA	1 cut(s)	126
BalI	TGGCCA	1 cut(s)	707
BanII	GRGCYC	1 cut(s)	717
Bbv12I	GWGCWC	1 cut(s)	717
BbvCI	CCTCAGC	1 cut(s)	153
BbvI	GCAGC	4 cut(s)	274, 307, 310, 421
BccI	CCATC	2 cut(s)	575, 635
BceAI	ACGGC	1 cut(s)	190
BciT130I	CCWGG	1 cut(s)	603
BcoDI	GTCTC	1 cut(s)	665
BfaI	CTAG	1 cut(s)	399
BfmI	CTRYAG	1 cut(s)	420
BfoI	RGCGCY	2 cut(s)	321, 651
BfrI	CTTAAG	1 cut(s)	179
BfuAI	ACCTGC	1 cut(s)	602
BisI	GCNGC	4 cut(s)	263, 321, 324, 435
BlsI	GCNGC	4 cut(s)	264, 322, 325, 436
Bme1390I	CCNGG	1 cut(s)	603
BmrFI	CCNGG	1 cut(s)	603
BmsI	GCATC	1 cut(s)	7
Bpu10I	CCTNAGC	1 cut(s)	153
Bpu14I	TTCGAA	1 cut(s)	126
BpuEI	CTTGAG	1 cut(s)	593
BsaI	GGTCTC	1 cut(s)	665
BsaJI	CCNNGG	3 cut(s)	172, 438, 708
BsaWI	WCCGGW	1 cut(s)	517
Bse118I	RCCGGY	2 cut(s)	89, 206
Bse3DI	GCAATG	1 cut(s)	864
BseBI	CCWGG	1 cut(s)	603
BseDI	CCNNGG	3 cut(s)	172, 438, 708
BseMI	GCAATG	1 cut(s)	864
BseMII	CTCAG	5 cut(s)	144, 353, 359, 512, 762
BseRI	GAGGAG	2 cut(s)	170, 517
BseXI	GCAGC	4 cut(s)	274, 307, 310, 421
BsgI	GTGCAG	1 cut(s)	636
BshFI	GGCC	3 cut(s)	132, 177, 707
BsiHKAI	GWGCWC	1 cut(s)	717
BsiSI	CCGG	4 cut(s)	90, 207, 410, 518
BslFI	GGGAC	1 cut(s)	56
BsmAI	GTCTC	1 cut(s)	665
BsmFI	GGGAC	1 cut(s)	56
BsmI	GAATGC	2 cut(s)	190, 326
BsnI	GGCC	3 cut(s)	132, 177, 707
Bso31I	GGTCTC	1 cut(s)	665
Bsp119I	TTCGAA	1 cut(s)	126
Bsp1286I	GDGCHC	1 cut(s)	717
Bsp143I	GATC	4 cut(s)	299, 476, 741, 861
BspACI	CCGC	3 cut(s)	5, 290, 311
BspANI	GGCC	3 cut(s)	132, 177, 707
BspCNI	CTCAG	5 cut(s)	145, 352, 358, 511, 763
BspMI	ACCTGC	1 cut(s)	602
BspPI	GGATC	2 cut(s)	484, 856
BspT104I	TTCGAA	1 cut(s)	126
BspTI	CTTAAG	1 cut(s)	179
BspTNI	GGTCTC	1 cut(s)	665
BsrDI	GCAATG	1 cut(s)	864
BsrFI	RCCGGY	2 cut(s)	89, 206
BssAI	RCCGGY	2 cut(s)	89, 206
BssECI	CCNNGG	3 cut(s)	172, 438, 708
BssMI	GATC	4 cut(s)	299, 476, 741, 861
BssNAI	GTATAC	1 cut(s)	569
BssT1I	CCWWGG	2 cut(s)	438, 708
Bst1107I	GTATAC	1 cut(s)	569
Bst2UI	CCWGG	1 cut(s)	603
Bst4CI	ACNGT	1 cut(s)	137
BstAFI	CTTAAG	1 cut(s)	179
BstBI	TTCGAA	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	250
BstDEI	CTNAG	7 cut(s)	153, 339, 345, 453, 498, 755, 771
BstDSI	CCRYGG	1 cut(s)	172
BstH2I	RGCGCY	2 cut(s)	321, 651
BstHHI	GCGC	2 cut(s)	320, 650
BstKTI	GATC	4 cut(s)	302, 479, 744, 864
BstMAI	GTCTC	1 cut(s)	665
BstMBI	GATC	4 cut(s)	299, 476, 741, 861
BstMWI	GCNNNNNNNGC	2 cut(s)	317, 794
BstNI	CCWGG	1 cut(s)	603
BstSCI	CCNGG	1 cut(s)	601
BstSFI	CTRYAG	1 cut(s)	420
BstV1I	GCAGC	4 cut(s)	274, 307, 310, 421
BstX2I	RGATCY	1 cut(s)	476
BstYI	RGATCY	1 cut(s)	476
BstZ17I	GTATAC	1 cut(s)	569
BsuRI	GGCC	3 cut(s)	132, 177, 707
BtgI	CCRYGG	1 cut(s)	172
BtsIMutI	CAGTG	2 cut(s)	133, 208
BveI	ACCTGC	1 cut(s)	602
Cac8I	GCNNGC	1 cut(s)	250
CaiI	CAGNNNCTG	1 cut(s)	623
CfoI	GCGC	2 cut(s)	320, 650
Cfr10I	RCCGGY	2 cut(s)	89, 206
Csp6I	GTAC	2 cut(s)	160, 824
CviAII	CATG	3 cut(s)	305, 469, 749
CviQI	GTAC	2 cut(s)	160, 824
DdeI	CTNAG	7 cut(s)	153, 339, 345, 453, 498, 755, 771
DpnI	GATC	4 cut(s)	301, 478, 743, 863
DpnII	GATC	4 cut(s)	299, 476, 741, 861
EaeI	YGGCCR	1 cut(s)	705
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	715
Eco130I	CCWWGG	2 cut(s)	438, 708
Eco24I	GRGCYC	1 cut(s)	717
Eco31I	GGTCTC	1 cut(s)	665
Eco32I	GATATC	1 cut(s)	495
Eco47III	AGCGCT	1 cut(s)	649
Eco53kI	GAGCTC	1 cut(s)	715
Eco57I	CTGAAG	2 cut(s)	399, 657
EcoICRI	GAGCTC	1 cut(s)	715
EcoRII	CCWGG	1 cut(s)	601
EcoRV	GATATC	1 cut(s)	495
EcoT14I	CCWWGG	2 cut(s)	438, 708
EcoT38I	GRGCYC	1 cut(s)	717
ErhI	CCWWGG	2 cut(s)	438, 708
FaeI	CATG	3 cut(s)	308, 472, 752
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	3 cut(s)	304, 468, 748
FblI	GTMKAC	1 cut(s)	568
Fnu4HI	GCNGC	4 cut(s)	263, 321, 324, 435
FriOI	GRGCYC	1 cut(s)	717
Fsp4HI	GCNGC	4 cut(s)	263, 321, 324, 435
FspBI	CTAG	1 cut(s)	399
GlaI	GCGC	2 cut(s)	319, 649
GluI	GCNGC	4 cut(s)	263, 321, 324, 435
HaeII	RGCGCY	2 cut(s)	321, 651
HaeIII	GGCC	3 cut(s)	132, 177, 707
HapII	CCGG	4 cut(s)	90, 207, 410, 518
HhaI	GCGC	2 cut(s)	320, 650
Hin1II	CATG	3 cut(s)	308, 472, 752
Hin6I	GCGC	2 cut(s)	318, 648
HinP1I	GCGC	2 cut(s)	318, 648
HinfI	GANTC	6 cut(s)	224, 269, 284, 343, 413, 443
HpaII	CCGG	4 cut(s)	90, 207, 410, 518
HphI	GGTGA	4 cut(s)	26, 221, 279, 438
Hpy166II	GTNNAC	1 cut(s)	569
Hpy188I	TCNGA	8 cut(s)	36, 236, 342, 348, 367, 501, 681, 772
Hpy188III	TCNNGA	4 cut(s)	331, 490, 664, 839
Hpy8I	GTNNAC	1 cut(s)	569
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	4 cut(s)	5, 120, 122, 139
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4IV	ACGT	2 cut(s)	45, 880
HpyCH4V	TGCA	6 cut(s)	105, 326, 389, 463, 617, 857
HpyF10VI	GCNNNNNNNGC	2 cut(s)	317, 794
HpyF3I	CTNAG	7 cut(s)	153, 339, 345, 453, 498, 755, 771
HpySE526I	ACGT	2 cut(s)	45, 880
Hsp92II	CATG	3 cut(s)	308, 472, 752
HspAI	GCGC	2 cut(s)	318, 648
Kzo9I	GATC	4 cut(s)	299, 476, 741, 861
LmnI	GCTCC	2 cut(s)	620, 712
Lsp1109I	GCAGC	4 cut(s)	274, 307, 310, 421
LweI	GCATC	1 cut(s)	7
MaeI	CTAG	1 cut(s)	399
MaeII	ACGT	2 cut(s)	45, 880
MalI	GATC	4 cut(s)	301, 478, 743, 863
MboI	GATC	4 cut(s)	299, 476, 741, 861
MboII	GAAGA	6 cut(s)	20, 87, 408, 540, 650, 797
MflI	RGATCY	1 cut(s)	476
MhlI	GDGCHC	1 cut(s)	717
MlsI	TGGCCA	1 cut(s)	707
MluCI	AATT	5 cut(s)	391, 543, 766, 834, 843
MluNI	TGGCCA	1 cut(s)	707
MlyI	GAGTC	4 cut(s)	218, 278, 337, 437
MnlI	CCTC	7 cut(s)	142, 148, 173, 301, 495, 498, 766
Mox20I	TGGCCA	1 cut(s)	707
MroXI	GAANNNNTTC	2 cut(s)	547, 834
MscI	TGGCCA	1 cut(s)	707
MseI	TTAA	1 cut(s)	180
Msp20I	TGGCCA	1 cut(s)	707
MspA1I	CMGCKG	1 cut(s)	434
MspCI	CTTAAG	1 cut(s)	179
MspI	CCGG	4 cut(s)	90, 207, 410, 518
MspR9I	CCNGG	1 cut(s)	603
Mva1269I	GAATGC	2 cut(s)	190, 326
MvaI	CCWGG	1 cut(s)	603
MwoI	GCNNNNNNNGC	2 cut(s)	317, 794
NdeII	GATC	4 cut(s)	299, 476, 741, 861
NlaIII	CATG	3 cut(s)	308, 472, 752
NspV	TTCGAA	1 cut(s)	126
PaqCI	CACCTGC	1 cut(s)	602
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PctI	GAATGC	2 cut(s)	190, 326
PdmI	GAANNNNTTC	2 cut(s)	547, 834
PfeI	GAWTC	2 cut(s)	269, 413
PfoI	TCCNGGA	1 cut(s)	601
PkrI	GCNGC	4 cut(s)	264, 322, 325, 436
PleI	GAGTC	4 cut(s)	218, 278, 337, 437
PpsI	GAGTC	4 cut(s)	218, 278, 337, 437
Psp124BI	GAGCTC	1 cut(s)	717
Psp6I	CCWGG	1 cut(s)	601
PspGI	CCWGG	1 cut(s)	601
PstNI	CAGNNNCTG	1 cut(s)	623
PsuI	RGATCY	1 cut(s)	476
PvuII	CAGCTG	1 cut(s)	434
RsaI	GTAC	2 cut(s)	161, 825
RsaNI	GTAC	2 cut(s)	160, 824
SacI	GAGCTC	1 cut(s)	717
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	4 cut(s)	263, 321, 324, 435
Sau3AI	GATC	4 cut(s)	299, 476, 741, 861
SchI	GAGTC	4 cut(s)	218, 278, 337, 437
ScrFI	CCNGG	1 cut(s)	603
SduI	GDGCHC	1 cut(s)	717
SfaNI	GCATC	1 cut(s)	7
SfcI	CTRYAG	1 cut(s)	420
SfuI	TTCGAA	1 cut(s)	126
SmlI	CTYRAG	2 cut(s)	179, 572
SmoI	CTYRAG	2 cut(s)	179, 572
Sse9I	AATT	5 cut(s)	391, 543, 766, 834, 843
SsiI	CCGC	3 cut(s)	5, 290, 311
SspMI	CTAG	1 cut(s)	399
SstI	GAGCTC	1 cut(s)	717
StyD4I	CCNGG	1 cut(s)	601
StyI	CCWWGG	2 cut(s)	438, 708
TaaI	ACNGT	1 cut(s)	137
TaiI	ACGT	2 cut(s)	48, 883
TaqI	TCGA	2 cut(s)	126, 808
TasI	AATT	5 cut(s)	391, 543, 766, 834, 843
TfiI	GAWTC	2 cut(s)	269, 413
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	2 cut(s)	140, 208
TseI	GCWGC	4 cut(s)	262, 320, 323, 434
TspDTI	ATGAA	1 cut(s)	384
TspGWI	ACGGA	1 cut(s)	86
TspRI	CASTG	2 cut(s)	140, 208
Vha464I	CTTAAG	1 cut(s)	179
XapI	RAATTY	3 cut(s)	391, 543, 834
XmiI	GTMKAC	1 cut(s)	568
XmnI	GAANNNNTTC	2 cut(s)	547, 834
XspI	CTAG	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.