Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010670

Physical Location & Seq

Genomic Coordinates Reverse (-)

84486616 .. 84489073

Gene Structure 2458 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53809

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGAGGAAGAAAAGGATGCTTTTTATGTTGTTCGAAAGGGAGATGTGGTGGGCATATATAAAAGTTTGAAGGATTGTCAAAACCAAGCCGGTTCCTCGGTATGCAATCCTTCTGTAAGTGTGTTTAAAGGGTATGGTTTGCCTAAGGAGGCCGAGGAGTACCTGGTTTCACACGGGCTTAAGAATGCTTCATATACAATCAGTGCCAGTGACGTGAAAGTTGATCTGTTTGGAAGCCTTGTTGCTTGTCCTTACCAGCAGCCGGCATCTTCTATGGTGAATTCAGGTGTCGAAGACCCTTCAAAAAGGAGATTTCCAGATATGGCGCTTTCCTCGGCTTCCAGTTTCTCTCCACATAAGCATTTTAAAGCTGATAGTTGTAGTCAAACTCGAGTAATTTCTTCTACCAGTCGTTGCACACTTGAGTTTGATGGTGCTTCAAAAGGAAATCCAGGACTATCTGGTGCGGGAGCTGTACTCCGTGCTGAAGACGGGAGTGTTTTGTACCGGCTGCAGGAAGGGGTGGGCATTGCAACAAATAACGTTGCCGAATATCGAGCTGTAATTCTAGGATTGAAGTATGCTCTTGAGAAAGGATATAAGCACATTAGTGTTAAAGGAGACTCTAAACTTGTCTGCTGCCAGATTCAGGGGACCTGGAAAACAAAAAATCAGAATATGGCCGACCTGTGCCAAATGGCCAAGCAGCTTAAGGAAAAGTTTACTTCTTTTGAGATCAATCATGTTCTCAGGGAGTTCAATGCCGAGGCTGATGTTCAAGCAAACCGAGCAATAAATCTCAGAGATGGACAAGTTGAAGTGGAATCGTCGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cauli_VI RVT_3

Protein Analysis

278

Amino Acids

30.27

Weight (kDa)

7.56

Isoelectric Point (pI)

33.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	143 - 264	4.2e-27	Reverse transcriptase-like
RNase_H	PF00075	143 - 248	1.1e-09	RNase H

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01410 AT3G01410
fragaria_vesca	FvH4_6g50271 FvH4_6g50271 FvH4_6g50271 FvH4_6g50271 FvH4_6g50271
malus_domestica	MD09G1038000.v1.1 MD17G1039000.v1.1
prunus_persica	Prupe.3G280000_v2.0.a1
pyrus_communis	pycom111g03030 pycom17g03520
rosa_chinensis	RchiOBHm_Chr2g0170591
rosa_laevigata	RLG00000021966
rosa_roxburghii	Rroxscaffold_2G00081200
rosa_samantha	Rh2AG621700 Rh2BG633100 Rh2CG602400 Rh2DG645900
rosa_wichuraiana	Rw2G051550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	467
AclI	AACGTT	1 cut(s)	543
AcoI	YGGCCR	2 cut(s)	681, 699
AcsI	RAATTY	1 cut(s)	280
AcuI	CTGAAG	1 cut(s)	507
AfaI	GTAC	3 cut(s)	161, 477, 506
AfiI	CCNNNNNNNGG	3 cut(s)	262, 514, 649
AflII	CTTAAG	2 cut(s)	179, 710
AgsI	TTSAA	7 cut(s)	70, 303, 441, 577, 760, 779, 818
AjiI	CACGTC	1 cut(s)	214
AjnI	CCWGG	3 cut(s)	162, 451, 656
AleI	CACNNNNGTG	1 cut(s)	609
AluBI	AGCT	4 cut(s)	371, 473, 560, 709
AluI	AGCT	4 cut(s)	371, 473, 560, 709
Alw26I	GTCTC	1 cut(s)	615
Ama87I	CYCGRG	1 cut(s)	390
AoxI	GGCC	3 cut(s)	150, 681, 699
ApeKI	GCWGC	4 cut(s)	259, 511, 639, 706
ApoI	RAATTY	1 cut(s)	280
AspLEI	GCGC	1 cut(s)	328
AspS9I	GGNCC	1 cut(s)	654
AsuHPI	GGTGA	1 cut(s)	289
AsuII	TTCGAA	1 cut(s)	34
AvaI	CYCGRG	1 cut(s)	390
AvaII	GGWCC	1 cut(s)	654
AxyI	CCTNAGG	1 cut(s)	144
BalI	TGGCCA	1 cut(s)	701
BbsI	GAAGAC	2 cut(s)	300, 495
BbvI	GCAGC	4 cut(s)	271, 498, 626, 718
BccI	CCATC	2 cut(s)	425, 800
BciT130I	CCWGG	3 cut(s)	164, 453, 658
BcoDI	GTCTC	1 cut(s)	615
BfaI	CTAG	1 cut(s)	569
BfmI	CTRYAG	1 cut(s)	512
BfoI	RGCGCY	1 cut(s)	329
BfrI	CTTAAG	2 cut(s)	179, 710
BisI	GCNGC	4 cut(s)	260, 512, 640, 707
BlsI	GCNGC	4 cut(s)	261, 513, 641, 708
Bme1390I	CCNGG	3 cut(s)	164, 453, 658
Bme18I	GGWCC	1 cut(s)	654
BmeT110I	CYCGRG	1 cut(s)	390
BmgBI	CACGTC	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	654
BmiI	GGNNCC	2 cut(s)	94, 655
BmrFI	CCNGG	3 cut(s)	164, 453, 658
BmsI	GCATC	2 cut(s)	7, 275
BpiI	GAAGAC	2 cut(s)	300, 495
BplI	GAGNNNNNCTC	2 cut(s)	462, 494
Bpu14I	TTCGAA	1 cut(s)	34
BpuEI	CTTGAG	2 cut(s)	443, 608
BsaJI	CCNNGG	4 cut(s)	96, 153, 333, 765
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	3 cut(s)	262, 514, 649
Bse118I	RCCGGY	3 cut(s)	89, 262, 507
Bse1I	ACTGG	3 cut(s)	207, 342, 408
Bse21I	CCTNAGG	1 cut(s)	144
Bse3DI	GCAATG	1 cut(s)	528
BseBI	CCWGG	3 cut(s)	164, 453, 658
BseDI	CCNNGG	4 cut(s)	96, 153, 333, 765
BseGI	GGATG	1 cut(s)	22
BseLI	CCNNNNNNNGG	3 cut(s)	262, 514, 649
BseMI	GCAATG	1 cut(s)	528
BseMII	CTCAG	2 cut(s)	763, 814
BseNI	ACTGG	3 cut(s)	207, 342, 408
BseRI	GAGGAG	1 cut(s)	170
BseXI	GCAGC	4 cut(s)	271, 498, 626, 718
BshFI	GGCC	3 cut(s)	152, 683, 701
BsiHKCI	CYCGRG	1 cut(s)	390
BsiSI	CCGG	3 cut(s)	90, 263, 508
BslFI	GGGAC	1 cut(s)	667
BslI	CCNNNNNNNGG	3 cut(s)	262, 514, 649
BsmAI	GTCTC	1 cut(s)	615
BsmFI	GGGAC	1 cut(s)	667
BsmI	GAATGC	1 cut(s)	190
BsnI	GGCC	3 cut(s)	152, 683, 701
BsoBI	CYCGRG	1 cut(s)	390
Bsp119I	TTCGAA	1 cut(s)	34
Bsp143I	GATC	2 cut(s)	223, 735
BspACI	CCGC	1 cut(s)	467
BspANI	GGCC	3 cut(s)	152, 683, 701
BspCNI	CTCAG	2 cut(s)	762, 813
BspLI	GGNNCC	2 cut(s)	94, 655
BspMAI	CTGCAG	1 cut(s)	516
BspT104I	TTCGAA	1 cut(s)	34
BspTI	CTTAAG	2 cut(s)	179, 710
BsrDI	GCAATG	1 cut(s)	528
BsrFI	RCCGGY	3 cut(s)	89, 262, 507
BsrI	ACTGG	3 cut(s)	207, 342, 408
BssAI	RCCGGY	3 cut(s)	89, 262, 507
BssECI	CCNNGG	4 cut(s)	96, 153, 333, 765
BssMI	GATC	2 cut(s)	223, 735
Bst2UI	CCWGG	3 cut(s)	164, 453, 658
BstAFI	CTTAAG	2 cut(s)	179, 710
BstBI	TTCGAA	1 cut(s)	34
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	3 cut(s)	144, 749, 800
BstF5I	GGATG	1 cut(s)	22
BstH2I	RGCGCY	1 cut(s)	329
BstHHI	GCGC	1 cut(s)	328
BstKTI	GATC	2 cut(s)	226, 738
BstMAI	GTCTC	1 cut(s)	615
BstMBI	GATC	2 cut(s)	223, 735
BstMWI	GCNNNNNNNGC	1 cut(s)	788
BstNI	CCWGG	3 cut(s)	164, 453, 658
BstSCI	CCNGG	3 cut(s)	162, 451, 656
BstSFI	CTRYAG	1 cut(s)	512
BstV1I	GCAGC	4 cut(s)	271, 498, 626, 718
BstV2I	GAAGAC	2 cut(s)	300, 495
Bsu36I	CCTNAGG	1 cut(s)	144
BsuRI	GGCC	3 cut(s)	152, 683, 701
BtrI	CACGTC	1 cut(s)	214
BtsCI	GGATG	1 cut(s)	22
BtsIMutI	CAGTG	2 cut(s)	208, 214
Cac8I	GCNNGC	1 cut(s)	264
CfoI	GCGC	1 cut(s)	328
Cfr10I	RCCGGY	3 cut(s)	89, 262, 507
Cfr13I	GGNCC	1 cut(s)	654
CsiI	ACCWGGT	1 cut(s)	162
Csp6I	GTAC	3 cut(s)	160, 476, 505
CviAII	CATG	1 cut(s)	743
CviQI	GTAC	3 cut(s)	160, 476, 505
DdeI	CTNAG	3 cut(s)	144, 749, 800
DpnI	GATC	2 cut(s)	225, 737
DpnII	GATC	2 cut(s)	223, 735
DraI	TTTAAA	2 cut(s)	127, 367
EaeI	YGGCCR	2 cut(s)	681, 699
Eco47I	GGWCC	1 cut(s)	654
Eco57I	CTGAAG	1 cut(s)	507
Eco81I	CCTNAGG	1 cut(s)	144
Eco88I	CYCGRG	1 cut(s)	390
EcoO109I	RGGNCCY	1 cut(s)	654
EcoRI	GAATTC	1 cut(s)	280
EcoRII	CCWGG	3 cut(s)	162, 451, 656
FaeI	CATG	1 cut(s)	746
FaqI	GGGAC	1 cut(s)	667
FatI	CATG	1 cut(s)	742
FauI	CCCGC	1 cut(s)	460
Fnu4HI	GCNGC	4 cut(s)	260, 512, 640, 707
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	4 cut(s)	260, 512, 640, 707
FspBI	CTAG	1 cut(s)	569
GlaI	GCGC	1 cut(s)	327
GluI	GCNGC	4 cut(s)	260, 512, 640, 707
HaeII	RGCGCY	1 cut(s)	329
HaeIII	GGCC	3 cut(s)	152, 683, 701
HapII	CCGG	3 cut(s)	90, 263, 508
HhaI	GCGC	1 cut(s)	328
Hin1II	CATG	1 cut(s)	746
Hin6I	GCGC	1 cut(s)	326
HinP1I	GCGC	1 cut(s)	326
HinfI	GANTC	3 cut(s)	623, 646, 824
HpaII	CCGG	3 cut(s)	90, 263, 508
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	1 cut(s)	723
Hpy188I	TCNGA	2 cut(s)	675, 803
Hpy188III	TCNNGA	2 cut(s)	317, 587
Hpy8I	GTNNAC	1 cut(s)	723
Hpy99I	CGWCG	1 cut(s)	832
HpyAV	CCTTC	4 cut(s)	64, 120, 309, 512
HpyCH4IV	ACGT	2 cut(s)	213, 543
HpyCH4V	TGCA	4 cut(s)	105, 417, 514, 533
HpyF10VI	GCNNNNNNNGC	1 cut(s)	788
HpyF3I	CTNAG	3 cut(s)	144, 749, 800
HpySE526I	ACGT	2 cut(s)	213, 543
Hsp92II	CATG	1 cut(s)	746
HspAI	GCGC	1 cut(s)	326
KroI	GCCGGC	1 cut(s)	262
KroNI	GCCGGC	1 cut(s)	264
Kzo9I	GATC	2 cut(s)	223, 735
LmnI	GCTCC	1 cut(s)	470
Lsp1109I	GCAGC	4 cut(s)	271, 498, 626, 718
LweI	GCATC	2 cut(s)	7, 275
MabI	ACCWGGT	1 cut(s)	162
MaeI	CTAG	1 cut(s)	569
MaeII	ACGT	2 cut(s)	213, 543
MaeIII	GTNAC	1 cut(s)	209
MalI	GATC	2 cut(s)	225, 737
MboI	GATC	2 cut(s)	223, 735
MboII	GAAGA	5 cut(s)	20, 261, 305, 393, 500
MlsI	TGGCCA	1 cut(s)	701
MluCI	AATT	3 cut(s)	280, 396, 564
MluNI	TGGCCA	1 cut(s)	701
MlyI	GAGTC	1 cut(s)	617
MnlI	CCTC	5 cut(s)	106, 142, 148, 343, 760
Mox20I	TGGCCA	1 cut(s)	701
MroNI	GCCGGC	1 cut(s)	262
MscI	TGGCCA	1 cut(s)	701
MseI	TTAA	6 cut(s)	126, 180, 366, 615, 711, 835
MslI	CAYNNNNRTG	1 cut(s)	609
Msp20I	TGGCCA	1 cut(s)	701
MspCI	CTTAAG	2 cut(s)	179, 710
MspI	CCGG	3 cut(s)	90, 263, 508
MspR9I	CCNGG	3 cut(s)	164, 453, 658
Mva1269I	GAATGC	1 cut(s)	190
MvaI	CCWGG	3 cut(s)	164, 453, 658
MwoI	GCNNNNNNNGC	1 cut(s)	788
NaeI	GCCGGC	1 cut(s)	264
NdeII	GATC	2 cut(s)	223, 735
NgoMIV	GCCGGC	1 cut(s)	262
NlaIII	CATG	1 cut(s)	746
NlaIV	GGNNCC	2 cut(s)	94, 655
NmeAIII	GCCGAG	3 cut(s)	178, 314, 790
NmuCI	GTSAC	1 cut(s)	209
NspV	TTCGAA	1 cut(s)	34
OliI	CACNNNNGTG	1 cut(s)	609
PaeR7I	CTCGAG	1 cut(s)	390
PctI	GAATGC	1 cut(s)	190
PdiI	GCCGGC	1 cut(s)	264
PfeI	GAWTC	2 cut(s)	646, 824
PfoI	TCCNGGA	1 cut(s)	451
PkrI	GCNGC	4 cut(s)	261, 513, 641, 708
PleI	GAGTC	1 cut(s)	617
PpsI	GAGTC	1 cut(s)	617
PpuMI	RGGWCCY	1 cut(s)	654
Psp1406I	AACGTT	1 cut(s)	543
Psp5II	RGGWCCY	1 cut(s)	654
Psp6I	CCWGG	3 cut(s)	162, 451, 656
PspGI	CCWGG	3 cut(s)	162, 451, 656
PspN4I	GGNNCC	2 cut(s)	94, 655
PspPI	GGNCC	1 cut(s)	654
PspPPI	RGGWCCY	1 cut(s)	654
PspXI	VCTCGAGB	1 cut(s)	390
PstI	CTGCAG	1 cut(s)	516
RsaI	GTAC	3 cut(s)	161, 477, 506
RsaNI	GTAC	3 cut(s)	160, 476, 505
RseI	CAYNNNNRTG	1 cut(s)	609
SaqAI	TTAA	6 cut(s)	126, 180, 366, 615, 711, 835
SatI	GCNGC	4 cut(s)	260, 512, 640, 707
Sau3AI	GATC	2 cut(s)	223, 735
Sau96I	GGNCC	1 cut(s)	654
SchI	GAGTC	1 cut(s)	617
ScrFI	CCNGG	3 cut(s)	164, 453, 658
SexAI	ACCWGGT	1 cut(s)	162
SfaNI	GCATC	2 cut(s)	7, 275
SfcI	CTRYAG	1 cut(s)	512
Sfr274I	CTCGAG	1 cut(s)	390
SfuI	TTCGAA	1 cut(s)	34
SinI	GGWCC	1 cut(s)	654
SlaI	CTCGAG	1 cut(s)	390
SmiMI	CAYNNNNRTG	1 cut(s)	609
SmlI	CTYRAG	5 cut(s)	179, 390, 422, 587, 710
SmoI	CTYRAG	5 cut(s)	179, 390, 422, 587, 710
Sse9I	AATT	3 cut(s)	280, 396, 564
SsiI	CCGC	1 cut(s)	467
SspMI	CTAG	1 cut(s)	569
StyD4I	CCNGG	3 cut(s)	162, 451, 656
TaiI	ACGT	2 cut(s)	216, 546
TaqI	TCGA	4 cut(s)	34, 291, 391, 556
TasI	AATT	3 cut(s)	280, 396, 564
TatI	WGTACW	1 cut(s)	475
TfiI	GAWTC	2 cut(s)	646, 824
Tru1I	TTAA	6 cut(s)	126, 180, 366, 615, 711, 835
Tru9I	TTAA	6 cut(s)	126, 180, 366, 615, 711, 835
TscAI	CASTG	2 cut(s)	208, 214
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	4 cut(s)	259, 511, 639, 706
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	1 cut(s)	180
TspGWI	ACGGA	1 cut(s)	470
TspRI	CASTG	2 cut(s)	208, 214
Vha464I	CTTAAG	2 cut(s)	179, 710
VpaK11BI	GGWCC	1 cut(s)	654
XapI	RAATTY	1 cut(s)	280
XhoI	CTCGAG	1 cut(s)	390
XspI	CTAG	1 cut(s)	569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.