AT3G01440

psbQ-like protein 2, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014562
Physical Location & Seq
Forward (+)
168408 .. 169662
1255 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G01440.1

Sequence Viewer

Length: 663 bp
ATGGCTCACTTCATAGACCTCAACAGTCTCACCAACACTTTACCGTCTCTTCCGAAACTACCCGAGAGTCGTAAAACCGGGAAATCCAGCGGGTTTGCTTGCAGGAGAACTGAAGAATTTCAAGAACCGGATTCGGTACAGATCACAAGACGGATGACATTAGGATTTGCTGTCTCAATAGGTCTTACCGGAATTCTCGGCGAAAATAATGTTTCCTTGGCACAAGACAATGGGTTTTGGATTGATGGTCCTCTTCCAATTCCTCCTATTTACAACAATATCGTGAATGAGAAGACGGGAACGAGAACATTCATAAAGAAAGGAGTGTATGTAGCGGATATCGGGACGAAAGGAAGAATGTATAGAGTTAAAAAGAATGCTTTTGATCTCTTGGCAATGGAGGATTTGATCGGACCAGATACTTTAAACTATGTGAAAAAGTACTTGAGGCTTAAATCCACATTTTTGTTTTACGATTTCGACAATCTCATCTCTGCTGCTGCCTCTGAAGACAAGCAACCTCTCACTGATTTAGCCAACAGATTGTTCGACAATTTCGAAAAGCTTGAAGATGCAGCTAAGACGAAGAACTTAGCAGAGACGGAATCGTGTTATAAAGATACAAAGTTTCTTCTTCAAGAGGTAATGACCAGAATGGCATGA

Protein Analysis

220

Amino Acids

24.78

Weight (kDa)

7.67

Isoelectric Point (pI)

40.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbQ PF05757 1 - 220 1.9e-60 Oxygen evolving enhancer protein 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014562)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01440
fragaria_vesca FvH4_3g21690
malus_domestica MD03G1212800.v1.1 MD11G1227900.v1.1
prunus_persica Prupe.4G201300_v2.0.a1
pyrus_communis pycom03g16160 pycom11g20060
rosa_chinensis RchiOBHm_Chr5g0037191
rosa_laevigata RLG00000033755
rosa_multiflora Rmu_co8022472.1_g000001
rosa_roxburghii Rroxscaffold_1G00043790
rosa_rugosa Rorug05G0161500
rosa_samantha Rh5AG253100 Rh5BG255000 Rh5CG287700 Rh5DG263500
rosa_wichuraiana Rw5G023380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 615
AciI CCGC 2 cut(s) 90, 335
AcsI RAATTY 2 cut(s) 116, 192
AcuI CTGAAG 2 cut(s) 132, 528
AfaI GTAC 2 cut(s) 138, 443
AgsI TTSAA 3 cut(s) 122, 569, 638
AjuI GAANNNNNNNTTGG 2 cut(s) 530, 562
AluBI AGCT 2 cut(s) 565, 578
AluI AGCT 2 cut(s) 565, 578
Alw26I GTCTC 4 cut(s) 32, 51, 178, 593
Ama87I CYCGRG 1 cut(s) 62
ApeKI GCWGC 3 cut(s) 497, 500, 575
ApoI RAATTY 2 cut(s) 116, 192
Asp700I GAANNNNTTC 1 cut(s) 117
AspS9I GGNCC 2 cut(s) 248, 413
AsuC2I CCSGG 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 22
AsuII TTCGAA 1 cut(s) 558
AvaI CYCGRG 1 cut(s) 62
AvaII GGWCC 2 cut(s) 248, 413
BbsI GAAGAC 2 cut(s) 299, 516
BbvI GCAGC 3 cut(s) 484, 487, 587
BccI CCATC 1 cut(s) 239
BcnI CCSGG 1 cut(s) 79
BcoDI GTCTC 4 cut(s) 32, 51, 178, 593
BisI GCNGC 3 cut(s) 498, 501, 576
BlsI GCNGC 3 cut(s) 499, 502, 577
BmcAI AGTACT 1 cut(s) 443
Bme1390I CCNGG 1 cut(s) 79
Bme18I GGWCC 2 cut(s) 248, 413
BmeT110I CYCGRG 1 cut(s) 62
BmgT120I GGNCC 2 cut(s) 248, 413
BmrFI CCNGG 1 cut(s) 79
BmsI GCATC 1 cut(s) 562
BpiI GAAGAC 2 cut(s) 299, 516
Bpu14I TTCGAA 1 cut(s) 558
BpuEI CTTGAG 1 cut(s) 466
BpuMI CCSGG 1 cut(s) 79
BsaJI CCNNGG 1 cut(s) 216
BsaWI WCCGGW 2 cut(s) 127, 188
BsaXI ACNNNNNCTCC 2 cut(s) 315, 345
Bse3DI GCAATG 1 cut(s) 402
BseDI CCNNGG 1 cut(s) 216
BseGI GGATG 1 cut(s) 159
BseMI GCAATG 1 cut(s) 402
BseXI GCAGC 3 cut(s) 484, 487, 587
BsiHKCI CYCGRG 1 cut(s) 62
BsiSI CCGG 3 cut(s) 78, 128, 189
BslFI GGGAC 1 cut(s) 358
BsmAI GTCTC 4 cut(s) 32, 51, 178, 593
BsmBI CGTCTC 2 cut(s) 51, 593
BsmFI GGGAC 1 cut(s) 358
BsmI GAATGC 1 cut(s) 382
BsoBI CYCGRG 1 cut(s) 62
Bsp119I TTCGAA 1 cut(s) 558
Bsp143I GATC 3 cut(s) 141, 385, 408
BspACI CCGC 2 cut(s) 90, 335
BspT104I TTCGAA 1 cut(s) 558
BsrDI GCAATG 1 cut(s) 402
BssECI CCNNGG 1 cut(s) 216
BssMI GATC 3 cut(s) 141, 385, 408
BssT1I CCWWGG 1 cut(s) 216
Bst4CI ACNGT 2 cut(s) 26, 45
Bst6I CTCTTC 2 cut(s) 54, 258
BstBI TTCGAA 1 cut(s) 558
BstC8I GCNNGC 1 cut(s) 100
BstDEI CTNAG 2 cut(s) 579, 592
BstF5I GGATG 1 cut(s) 159
BstKTI GATC 3 cut(s) 144, 388, 411
BstMAI GTCTC 4 cut(s) 32, 51, 178, 593
BstMBI GATC 3 cut(s) 141, 385, 408
BstSCI CCNGG 1 cut(s) 77
BstV1I GCAGC 3 cut(s) 484, 487, 587
BstV2I GAAGAC 2 cut(s) 299, 516
BtsCI GGATG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 525
Cac8I GCNNGC 1 cut(s) 100
Cfr13I GGNCC 2 cut(s) 248, 413
Csp6I GTAC 2 cut(s) 137, 442
CviAII CATG 1 cut(s) 660
CviJI RGCY 5 cut(s) 5, 451, 536, 565, 578
CviKI_1 RGCY 5 cut(s) 5, 451, 536, 565, 578
CviQI GTAC 2 cut(s) 137, 442
DdeI CTNAG 2 cut(s) 579, 592
DpnI GATC 3 cut(s) 143, 387, 410
DpnII GATC 3 cut(s) 141, 385, 408
DraI TTTAAA 1 cut(s) 426
Eam1104I CTCTTC 2 cut(s) 54, 258
EarI CTCTTC 2 cut(s) 54, 258
Eco130I CCWWGG 1 cut(s) 216
Eco32I GATATC 1 cut(s) 340
Eco47I GGWCC 2 cut(s) 248, 413
Eco57I CTGAAG 2 cut(s) 132, 528
Eco88I CYCGRG 1 cut(s) 62
EcoRI GAATTC 1 cut(s) 192
EcoRV GATATC 1 cut(s) 340
EcoT14I CCWWGG 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 216
Esp3I CGTCTC 2 cut(s) 51, 593
FaeI CATG 1 cut(s) 663
FaiI YATR 7 cut(s) 14, 314, 330, 363, 432, 615, 661
FaqI GGGAC 1 cut(s) 358
FatI CATG 1 cut(s) 659
FauI CCCGC 1 cut(s) 83
Fnu4HI GCNGC 3 cut(s) 498, 501, 576
FokI GGATG 1 cut(s) 166
Fsp4HI GCNGC 3 cut(s) 498, 501, 576
GluI GCNGC 3 cut(s) 498, 501, 576
HapII CCGG 3 cut(s) 78, 128, 189
Hin1II CATG 1 cut(s) 663
HindIII AAGCTT 1 cut(s) 563
HinfI GANTC 3 cut(s) 67, 131, 605
HpaII CCGG 3 cut(s) 78, 128, 189
HphI GGTGA 1 cut(s) 22
Hpy188I TCNGA 3 cut(s) 54, 413, 508
Hpy188III TCNNGA 4 cut(s) 122, 283, 343, 638
HpyCH4III ACNGT 2 cut(s) 26, 45
HpyCH4V TGCA 2 cut(s) 102, 575
HpyF3I CTNAG 2 cut(s) 579, 592
Hsp92II CATG 1 cut(s) 663
Kzo9I GATC 3 cut(s) 141, 385, 408
LpnPI CCDG 6 cut(s) 88, 91, 100, 141, 202, 429
Lsp1109I GCAGC 3 cut(s) 484, 487, 587
LweI GCATC 1 cut(s) 562
MalI GATC 3 cut(s) 143, 387, 410
MboI GATC 3 cut(s) 141, 385, 408
MluCI AATT 4 cut(s) 116, 192, 258, 553
MlyI GAGTC 1 cut(s) 76
MnlI CCTC 8 cut(s) 29, 261, 273, 394, 441, 514, 531, 634
MroXI GAANNNNTTC 1 cut(s) 117
MseI TTAA 3 cut(s) 369, 425, 453
MspA1I CMGCKG 1 cut(s) 90
MspI CCGG 3 cut(s) 78, 128, 189
MspR9I CCNGG 1 cut(s) 79
Mva1269I GAATGC 1 cut(s) 382
NciI CCSGG 1 cut(s) 79
NdeII GATC 3 cut(s) 141, 385, 408
NlaIII CATG 1 cut(s) 663
NmeAIII GCCGAG 1 cut(s) 177
NspV TTCGAA 1 cut(s) 558
PcsI WCGNNNNNNNCGW 1 cut(s) 555
PctI GAATGC 1 cut(s) 382
PdmI GAANNNNTTC 1 cut(s) 117
PfeI GAWTC 2 cut(s) 131, 605
PkrI GCNGC 3 cut(s) 499, 502, 577
PleI GAGTC 1 cut(s) 75
PpsI GAGTC 1 cut(s) 75
PsiI TTATAA 1 cut(s) 615
PspPI GGNCC 2 cut(s) 248, 413
RsaI GTAC 2 cut(s) 138, 443
RsaNI GTAC 2 cut(s) 137, 442
SaqAI TTAA 3 cut(s) 369, 425, 453
SatI GCNGC 3 cut(s) 498, 501, 576
Sau3AI GATC 3 cut(s) 141, 385, 408
Sau96I GGNCC 2 cut(s) 248, 413
ScaI AGTACT 1 cut(s) 443
SchI GAGTC 1 cut(s) 76
ScrFI CCNGG 1 cut(s) 79
SetI ASST 6 cut(s) 21, 184, 523, 567, 580, 645
SfaNI GCATC 1 cut(s) 562
SfuI TTCGAA 1 cut(s) 558
SinI GGWCC 2 cut(s) 248, 413
SmlI CTYRAG 1 cut(s) 445
SmoI CTYRAG 1 cut(s) 445
Sse9I AATT 4 cut(s) 116, 192, 258, 553
SsiI CCGC 2 cut(s) 90, 335
StyD4I CCNGG 1 cut(s) 77
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 2 cut(s) 26, 45
TaqI TCGA 3 cut(s) 480, 549, 558
TasI AATT 4 cut(s) 116, 192, 258, 553
TatI WGTACW 1 cut(s) 441
TfiI GAWTC 2 cut(s) 131, 605
Tru1I TTAA 3 cut(s) 369, 425, 453
Tru9I TTAA 3 cut(s) 369, 425, 453
TscAI CASTG 1 cut(s) 532
TseI GCWGC 3 cut(s) 497, 500, 575
TspDTI ATGAA 1 cut(s) 301
TspGWI ACGGA 2 cut(s) 166, 617
TspRI CASTG 1 cut(s) 532
VpaK11BI GGWCC 2 cut(s) 248, 413
XapI RAATTY 2 cut(s) 116, 192
XmnI GAANNNNTTC 1 cut(s) 117
ZrmI AGTACT 1 cut(s) 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.