Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014562

Physical Location & Seq

Genomic Coordinates Reverse (-)

31550070 .. 31551144

Gene Structure 1075 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31593

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCTCAGTTAGCAAACTTAAATGGAGTCTCTGAAACACTGCCAGTTCTACCAAGGCTTCCAAGCATTCAAAAAACCCAAAAGCGTGTTGGCATTATTGGATGTCTAGGCAAGAAAAAAGATCATGATCTTCTGGAACAGCCACTACAAACTACAAGAAGGCTGGCATTAGGCCTTGCCTCTATTGCACTTGTTGGGGACTCCTCAAGTGGAGCCGCTCTTGCCGAAGGCAACAACGGGTTCTGGTTAGATGGCCCTCTGCCAGTTCCTTCTGCTGATAATAAAATTGCAAATGAGAAGACGGGGACGCGGTCATTTCTAAAGAATCATCTCTATATGGCAGACATTGGAACCAAAGGGAGAAAGTATAGGCTTAAGAAGTATGCTTTTGATCTCCTGGCTATGGCAGATTTGATTGCACAAGATACACTCAACTATGTCCAAAAGTATCTGCGACTTAAATCCACATTCATGTACTTTGATTTTGATAAAGTTATCACTGCAGCTCCAGTCACTGAGAAGCAACCTCTCACTGACCTCGCTAACAGATTGTTCAACACCGTCGAAAAGCTTGATGGTGCTGTGAAGCAAAGGAACCTGTCCGAGACTGAAACATATTATCAAGACACAACAGTTATTCTCCAAGAGGTCATGGATCGAATGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009055 GO:0009344 GO:0009507 GO:0009521 GO:0009523 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009654 GO:0009767 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0019684 GO:0022900 GO:0031976 GO:0031977 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045156 GO:0055035 GO:0055114 GO:0098796 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbQ

Protein Analysis

222

Amino Acids

24.68

Weight (kDa)

9.18

Isoelectric Point (pI)

42.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbQ	PF05757	1 - 222	4.4e-56	Oxygen evolving enhancer protein 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01440
fragaria_vesca	FvH4_3g21690
malus_domestica	MD03G1212800.v1.1 MD11G1227900.v1.1
prunus_persica	Prupe.4G201300_v2.0.a1
pyrus_communis	pycom03g16160 pycom11g20060
rosa_chinensis	RchiOBHm_Chr5g0037191
rosa_laevigata	RLG00000033755
rosa_multiflora	Rmu_co8022472.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043790
rosa_rugosa	Rorug05G0161500
rosa_samantha	Rh5AG253100 Rh5BG255000 Rh5CG287700 Rh5DG263500
rosa_wichuraiana	Rw5G023380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	218
AccII	CGCG	1 cut(s)	310
AciI	CCGC	2 cut(s)	216, 310
AclWI	GGATC	1 cut(s)	663
AfaI	GTAC	1 cut(s)	476
AfiI	CCNNNNNNNGG	1 cut(s)	403
AflII	CTTAAG	1 cut(s)	374
AgsI	TTSAA	2 cut(s)	71, 556
AjnI	CCWGG	1 cut(s)	396
AluBI	AGCT	2 cut(s)	506, 571
AluI	AGCT	2 cut(s)	506, 571
Alw26I	GTCTC	2 cut(s)	34, 599
AlwI	GGATC	1 cut(s)	663
AlwNI	CAGNNNCTG	1 cut(s)	515
AoxI	GGCC	2 cut(s)	172, 253
ApeKI	GCWGC	1 cut(s)	503
AspS9I	GGNCC	1 cut(s)	254
BbsI	GAAGAC	1 cut(s)	305
BbvI	GCAGC	1 cut(s)	515
BccI	CCATC	2 cut(s)	245, 569
BciT130I	CCWGG	1 cut(s)	398
BcoDI	GTCTC	2 cut(s)	34, 599
BfaI	CTAG	1 cut(s)	107
BfmI	CTRYAG	1 cut(s)	501
BfrI	CTTAAG	1 cut(s)	374
BisI	GCNGC	2 cut(s)	216, 504
BlsI	GCNGC	2 cut(s)	217, 505
Bme1390I	CCNGG	1 cut(s)	398
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	3 cut(s)	214, 352, 596
BmrFI	CCNGG	1 cut(s)	398
BpiI	GAAGAC	1 cut(s)	305
BpmI	CTGGAG	1 cut(s)	492
BpuEI	CTTGAG	1 cut(s)	190
BsaBI	GATNNNNATC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	490, 520
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse1I	ACTGG	3 cut(s)	44, 263, 509
Bse8I	GATNNNNATC	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	398
BseDI	CCNNGG	1 cut(s)	53
BseGI	GGATG	1 cut(s)	107
BseJI	GATNNNNATC	1 cut(s)	126
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMII	CTCAG	2 cut(s)	20, 507
BseNI	ACTGG	3 cut(s)	44, 263, 509
BseRI	GAGGAG	1 cut(s)	193
BseXI	GCAGC	1 cut(s)	515
Bsh1236I	CGCG	1 cut(s)	310
BshFI	GGCC	2 cut(s)	174, 255
BslFI	GGGAC	2 cut(s)	212, 319
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmAI	GTCTC	2 cut(s)	34, 599
BsmFI	GGGAC	2 cut(s)	212, 319
BsmI	GAATGC	1 cut(s)	66
BsnI	GGCC	2 cut(s)	174, 255
Bsp143I	GATC	4 cut(s)	121, 127, 391, 655
BspACI	CCGC	2 cut(s)	216, 310
BspANI	GGCC	2 cut(s)	174, 255
BspCNI	CTCAG	2 cut(s)	19, 508
BspFNI	CGCG	1 cut(s)	310
BspHI	TCATGA	1 cut(s)	124
BspLI	GGNNCC	3 cut(s)	214, 352, 596
BspMAI	CTGCAG	1 cut(s)	505
BspPI	GGATC	1 cut(s)	663
BspTI	CTTAAG	1 cut(s)	374
BsrBI	CCGCTC	1 cut(s)	218
BsrI	ACTGG	3 cut(s)	44, 263, 509
BssECI	CCNNGG	1 cut(s)	53
BssMI	GATC	4 cut(s)	121, 127, 391, 655
BssT1I	CCWWGG	1 cut(s)	53
Bst2UI	CCWGG	1 cut(s)	398
Bst4CI	ACNGT	2 cut(s)	562, 634
BstAFI	CTTAAG	1 cut(s)	374
BstC8I	GCNNGC	1 cut(s)	165
BstDEI	CTNAG	2 cut(s)	6, 516
BstF5I	GGATG	1 cut(s)	107
BstFNI	CGCG	1 cut(s)	310
BstKTI	GATC	4 cut(s)	124, 130, 394, 658
BstMAI	GTCTC	2 cut(s)	34, 599
BstMBI	GATC	4 cut(s)	121, 127, 391, 655
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 185, 221
BstNI	CCWGG	1 cut(s)	398
BstSCI	CCNGG	1 cut(s)	396
BstSFI	CTRYAG	1 cut(s)	501
BstUI	CGCG	1 cut(s)	310
BstV1I	GCAGC	1 cut(s)	515
BstV2I	GAAGAC	1 cut(s)	305
BsuRI	GGCC	2 cut(s)	174, 255
BtsCI	GGATG	1 cut(s)	107
BtsI	GCAGTG	2 cut(s)	38, 498
BtsIMutI	CAGTG	4 cut(s)	38, 498, 513, 531
Cac8I	GCNNGC	1 cut(s)	165
CaiI	CAGNNNCTG	1 cut(s)	515
CciI	TCATGA	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	254
CseI	GACGC	1 cut(s)	316
Csp6I	GTAC	1 cut(s)	475
CviAII	CATG	4 cut(s)	125, 472, 652, 666
CviQI	GTAC	1 cut(s)	475
DdeI	CTNAG	2 cut(s)	6, 516
DpnI	GATC	4 cut(s)	123, 129, 393, 657
DpnII	GATC	4 cut(s)	121, 127, 391, 655
Eco130I	CCWWGG	1 cut(s)	53
Eco147I	AGGCCT	1 cut(s)	174
EcoRII	CCWGG	1 cut(s)	396
EcoT14I	CCWWGG	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	53
FaeI	CATG	4 cut(s)	128, 475, 655, 669
FaqI	GGGAC	2 cut(s)	212, 319
FatI	CATG	4 cut(s)	124, 471, 651, 665
Fnu4HI	GCNGC	2 cut(s)	216, 504
FokI	GGATG	1 cut(s)	114
Fsp4HI	GCNGC	2 cut(s)	216, 504
FspBI	CTAG	1 cut(s)	107
GluI	GCNGC	2 cut(s)	216, 504
GsuI	CTGGAG	1 cut(s)	492
HaeIII	GGCC	2 cut(s)	174, 255
HgaI	GACGC	1 cut(s)	316
Hin1II	CATG	4 cut(s)	128, 475, 655, 669
HindIII	AAGCTT	1 cut(s)	569
HinfI	GANTC	3 cut(s)	27, 200, 325
Hpy188I	TCNGA	2 cut(s)	34, 604
Hpy188III	TCNNGA	3 cut(s)	125, 134, 623
Hpy99I	CGWCG	1 cut(s)	566
HpyAV	CCTTC	3 cut(s)	153, 221, 279
HpyCH4III	ACNGT	2 cut(s)	562, 634
HpyCH4V	TGCA	4 cut(s)	188, 290, 419, 503
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 185, 221
HpyF3I	CTNAG	2 cut(s)	6, 516
Hsp92II	CATG	4 cut(s)	128, 475, 655, 669
Kzo9I	GATC	4 cut(s)	121, 127, 391, 655
LmnI	GCTCC	2 cut(s)	212, 511
LpnPI	CCDG	9 cut(s)	57, 119, 149, 229, 276, 383, 410, 522, 611
Lsp1109I	GCAGC	1 cut(s)	515
MaeI	CTAG	1 cut(s)	107
MaeIII	GTNAC	1 cut(s)	511
MalI	GATC	4 cut(s)	123, 129, 393, 657
MbiI	CCGCTC	1 cut(s)	218
MboI	GATC	4 cut(s)	121, 127, 391, 655
MboII	GAAGA	2 cut(s)	122, 310
MluCI	AATT	1 cut(s)	285
MlyI	GAGTC	2 cut(s)	36, 194
MnlI	CCTC	6 cut(s)	190, 214, 267, 537, 548, 640
MseI	TTAA	3 cut(s)	20, 375, 459
MslI	CAYNNNNRTG	1 cut(s)	470
MspCI	CTTAAG	1 cut(s)	374
MspR9I	CCNGG	1 cut(s)	398
Mva1269I	GAATGC	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	398
MvnI	CGCG	1 cut(s)	310
MwoI	GCNNNNNNNGC	3 cut(s)	11, 185, 221
NdeII	GATC	4 cut(s)	121, 127, 391, 655
NlaIII	CATG	4 cut(s)	128, 475, 655, 669
NlaIV	GGNNCC	3 cut(s)	214, 352, 596
NmuCI	GTSAC	1 cut(s)	511
PagI	TCATGA	1 cut(s)	124
PceI	AGGCCT	1 cut(s)	174
PctI	GAATGC	1 cut(s)	66
PfeI	GAWTC	1 cut(s)	325
PflFI	GACNNNGTC	1 cut(s)	310
PkrI	GCNGC	2 cut(s)	217, 505
PleI	GAGTC	2 cut(s)	35, 194
PpsI	GAGTC	2 cut(s)	35, 194
Psp6I	CCWGG	1 cut(s)	396
PspGI	CCWGG	1 cut(s)	396
PspN4I	GGNNCC	3 cut(s)	214, 352, 596
PspPI	GGNCC	1 cut(s)	254
PsrI	GAACNNNNNNTAC	2 cut(s)	129, 161
PstI	CTGCAG	1 cut(s)	505
PstNI	CAGNNNCTG	1 cut(s)	515
PsyI	GACNNNGTC	1 cut(s)	310
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
RseI	CAYNNNNRTG	1 cut(s)	470
SaqAI	TTAA	3 cut(s)	20, 375, 459
SatI	GCNGC	2 cut(s)	216, 504
Sau3AI	GATC	4 cut(s)	121, 127, 391, 655
Sau96I	GGNCC	1 cut(s)	254
SchI	GAGTC	2 cut(s)	36, 194
ScrFI	CCNGG	1 cut(s)	398
SetI	ASST	6 cut(s)	508, 529, 540, 573, 600, 651
SfcI	CTRYAG	1 cut(s)	501
SmiMI	CAYNNNNRTG	1 cut(s)	470
SmlI	CTYRAG	2 cut(s)	205, 374
SmoI	CTYRAG	2 cut(s)	205, 374
Sse9I	AATT	1 cut(s)	285
SseBI	AGGCCT	1 cut(s)	174
SsiI	CCGC	2 cut(s)	216, 310
SspMI	CTAG	1 cut(s)	107
StuI	AGGCCT	1 cut(s)	174
StyD4I	CCNGG	1 cut(s)	396
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	2 cut(s)	562, 634
TaqI	TCGA	2 cut(s)	564, 658
TasI	AATT	1 cut(s)	285
TatI	WGTACW	1 cut(s)	474
TauI	GCSGC	1 cut(s)	218
TfiI	GAWTC	1 cut(s)	325
Tru1I	TTAA	3 cut(s)	20, 375, 459
Tru9I	TTAA	3 cut(s)	20, 375, 459
TscAI	CASTG	4 cut(s)	45, 505, 520, 538
TseFI	GTSAC	1 cut(s)	511
TseI	GCWGC	1 cut(s)	503
Tsp45I	GTSAC	1 cut(s)	511
TspDTI	ATGAA	1 cut(s)	460
TspRI	CASTG	4 cut(s)	45, 505, 520, 538
Tth111I	GACNNNGTC	1 cut(s)	310
Vha464I	CTTAAG	1 cut(s)	374
XcmI	CCANNNNNNNNNTGG	1 cut(s)	86
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.