pycom03g16160

psbQ-like protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0014562
Physical Location & Seq
Forward (+)
17305161 .. 17305987
827 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g16160.1

Sequence Viewer

Length: 663 bp
ATGGCTCGCTTGGCAAACTTAAATGGAGTCTCCGAAACACTGCCGGTCCTTCCAAGGTTTCCGAGCGTACAAACAACCCGAAAGAAAGCGAGCATTATTTGCTTTACGTGCAAGAAAAGCGATGATTTTCAGGAACAGCCACTACAAACTACAAGAAGAATTGCATTAGGCCTGGCCTCTGTTGCACTTGTTGGCAACTTCTGCAATGGTGTCTCTCTTGCTGAGGGCAACGGGTTCTGGCTCGACGGCCCTCTGCCCGTGCCTTCTGCTCAAAACAAAATTGCAAATGAGAAAACGGGAACGCGATCTTTTCTGAAGAGGGGACTCTACATGGCAAATATTGGAACCAAAGGGAGGAAGTTCAGGCTTAAGAAATATGCATTCGATCTCCTGGCAATGGCGGATTTGATTGCGAAAGATACACTAAACTATGTCCGAAGGTATCTGCGGCTGAAATCCACATTCATGTACTTTGATTTCGACCAAGTTATCTCTGCAGCACCAGTCGATGAGAAACAACCCCTCACAGATCTTGCTAACAGATTGTTTGACACCGTCGAAAAGCTTGATGGCGCCGTGAAGCAACGTGACCTCCCTCGGACAGAAACATACTATAAAGACACAACAGTTGTTCTCCAAGAGGTCATGGATCGAATGGCGTGA

Protein Analysis

221

Amino Acids

24.76

Weight (kDa)

9.58

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbQ PF05757 1 - 220 1.1e-53 Oxygen evolving enhancer protein 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014562)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01440
fragaria_vesca FvH4_3g21690
malus_domestica MD03G1212800.v1.1 MD11G1227900.v1.1
prunus_persica Prupe.4G201300_v2.0.a1
pyrus_communis pycom03g16160 pycom11g20060
rosa_chinensis RchiOBHm_Chr5g0037191
rosa_laevigata RLG00000033755
rosa_multiflora Rmu_co8022472.1_g000001
rosa_roxburghii Rroxscaffold_1G00043790
rosa_rugosa Rorug05G0161500
rosa_samantha Rh5AG253100 Rh5BG255000 Rh5CG287700 Rh5DG263500
rosa_wichuraiana Rw5G023380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 572
AccII CGCG 1 cut(s) 304
AciI CCGC 2 cut(s) 401, 448
AclWI GGATC 1 cut(s) 657
AcuI CTGAAG 1 cut(s) 335
AcyI GRCGYC 1 cut(s) 573
AfaI GTAC 2 cut(s) 69, 470
AfiI CCNNNNNNNGG 2 cut(s) 354, 397
AflII CTTAAG 1 cut(s) 368
AjnI CCWGG 2 cut(s) 171, 390
AluBI AGCT 1 cut(s) 565
AluI AGCT 1 cut(s) 565
Alw26I GTCTC 2 cut(s) 34, 217
AlwI GGATC 1 cut(s) 657
AoxI GGCC 3 cut(s) 169, 174, 247
ApeKI GCWGC 1 cut(s) 497
AspLEI GCGC 1 cut(s) 575
AspS9I GGNCC 2 cut(s) 46, 248
AvaII GGWCC 1 cut(s) 46
BanI GGYRCC 1 cut(s) 572
BbvCI CCTCAGC 1 cut(s) 222
BbvI GCAGC 1 cut(s) 509
BccI CCATC 1 cut(s) 563
BceAI ACGGC 2 cut(s) 262, 560
BciT130I CCWGG 2 cut(s) 173, 392
BcoDI GTCTC 2 cut(s) 34, 217
BfmI CTRYAG 1 cut(s) 495
BfoI RGCGCY 1 cut(s) 576
BfrI CTTAAG 1 cut(s) 368
BglII AGATCT 1 cut(s) 529
BisI GCNGC 2 cut(s) 449, 498
BlsI GCNGC 2 cut(s) 450, 499
Bme1390I CCNGG 2 cut(s) 173, 392
Bme18I GGWCC 1 cut(s) 46
BmgT120I GGNCC 2 cut(s) 46, 248
BmiI GGNNCC 2 cut(s) 346, 574
BmrFI CCNGG 2 cut(s) 173, 392
Bpu10I CCTNAGC 1 cut(s) 222
BsaAI YACGTR 1 cut(s) 108
BsaHI GRCGYC 1 cut(s) 573
BsaJI CCNNGG 2 cut(s) 53, 596
BsaXI ACNNNNNCTCC 2 cut(s) 576, 606
Bsc4I CCNNNNNNNGG 2 cut(s) 354, 397
Bse118I RCCGGY 1 cut(s) 43
Bse1I ACTGG 1 cut(s) 503
Bse3DI GCAATG 2 cut(s) 211, 402
BseBI CCWGG 2 cut(s) 173, 392
BseDI CCNNGG 2 cut(s) 53, 596
BseLI CCNNNNNNNGG 2 cut(s) 354, 397
BseMI GCAATG 2 cut(s) 211, 402
BseMII CTCAG 1 cut(s) 213
BseNI ACTGG 1 cut(s) 503
BseXI GCAGC 1 cut(s) 509
Bsh1236I CGCG 1 cut(s) 304
BshFI GGCC 3 cut(s) 171, 176, 249
BshNI GGYRCC 1 cut(s) 572
BsiSI CCGG 1 cut(s) 44
BslFI GGGAC 1 cut(s) 336
BslI CCNNNNNNNGG 2 cut(s) 354, 397
BsmAI GTCTC 2 cut(s) 34, 217
BsmFI GGGAC 1 cut(s) 336
BsmI GAATGC 1 cut(s) 380
BsnI GGCC 3 cut(s) 171, 176, 249
Bsp143I GATC 4 cut(s) 305, 385, 529, 649
BspACI CCGC 2 cut(s) 401, 448
BspANI GGCC 3 cut(s) 171, 176, 249
BspCNI CTCAG 1 cut(s) 214
BspFNI CGCG 1 cut(s) 304
BspLI GGNNCC 2 cut(s) 346, 574
BspMAI CTGCAG 1 cut(s) 499
BspPI GGATC 1 cut(s) 657
BspT107I GGYRCC 1 cut(s) 572
BspTI CTTAAG 1 cut(s) 368
BsrDI GCAATG 2 cut(s) 211, 402
BsrFI RCCGGY 1 cut(s) 43
BsrI ACTGG 1 cut(s) 503
BssAI RCCGGY 1 cut(s) 43
BssECI CCNNGG 2 cut(s) 53, 596
BssMI GATC 4 cut(s) 305, 385, 529, 649
BssNI GRCGYC 1 cut(s) 573
BssT1I CCWWGG 1 cut(s) 53
Bst2UI CCWGG 2 cut(s) 173, 392
Bst4CI ACNGT 2 cut(s) 556, 628
Bst6I CTCTTC 1 cut(s) 311
BstACI GRCGYC 1 cut(s) 573
BstAFI CTTAAG 1 cut(s) 368
BstAPI GCANNNNNTGC 2 cut(s) 99, 201
BstBAI YACGTR 1 cut(s) 108
BstC8I GCNNGC 2 cut(s) 7, 91
BstDEI CTNAG 1 cut(s) 222
BstFNI CGCG 1 cut(s) 304
BstH2I RGCGCY 1 cut(s) 576
BstHHI GCGC 1 cut(s) 575
BstKTI GATC 4 cut(s) 308, 388, 532, 652
BstMAI GTCTC 2 cut(s) 34, 217
BstMBI GATC 4 cut(s) 305, 385, 529, 649
BstMWI GCNNNNNNNGC 6 cut(s) 11, 99, 108, 117, 182, 201
BstNI CCWGG 2 cut(s) 173, 392
BstSCI CCNGG 2 cut(s) 171, 390
BstSFI CTRYAG 1 cut(s) 495
BstUI CGCG 1 cut(s) 304
BstV1I GCAGC 1 cut(s) 509
BstX2I RGATCY 1 cut(s) 529
BstYI RGATCY 1 cut(s) 529
BsuRI GGCC 3 cut(s) 171, 176, 249
BtgZI GCGATG 1 cut(s) 135
BtsI GCAGTG 1 cut(s) 38
BtsIMutI CAGTG 1 cut(s) 38
Cac8I GCNNGC 2 cut(s) 7, 91
CfoI GCGC 1 cut(s) 575
Cfr10I RCCGGY 1 cut(s) 43
Cfr13I GGNCC 2 cut(s) 46, 248
Csp6I GTAC 2 cut(s) 68, 469
CviAII CATG 3 cut(s) 331, 466, 646
CviJI RGCY 9 cut(s) 5, 139, 171, 176, 241, 249, 367, 451, 565
CviKI_1 RGCY 9 cut(s) 5, 139, 171, 176, 241, 249, 367, 451, 565
CviQI GTAC 2 cut(s) 68, 469
DdeI CTNAG 1 cut(s) 222
DinI GGCGCC 1 cut(s) 574
DpnI GATC 4 cut(s) 307, 387, 531, 651
DpnII GATC 4 cut(s) 305, 385, 529, 649
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
EciI GGCGGA 1 cut(s) 416
Eco130I CCWWGG 1 cut(s) 53
Eco147I AGGCCT 1 cut(s) 171
Eco47I GGWCC 1 cut(s) 46
Eco57I CTGAAG 1 cut(s) 335
EcoRII CCWGG 2 cut(s) 171, 390
EcoT14I CCWWGG 1 cut(s) 53
EcoT22I ATGCAT 1 cut(s) 382
EgeI GGCGCC 1 cut(s) 574
EheI GGCGCC 1 cut(s) 574
ErhI CCWWGG 1 cut(s) 53
FaeI CATG 3 cut(s) 334, 469, 649
FaiI YATR 7 cut(s) 332, 378, 432, 467, 610, 615, 647
FaqI GGGAC 1 cut(s) 336
FatI CATG 3 cut(s) 330, 465, 645
Fnu4HI GCNGC 2 cut(s) 449, 498
Fsp4HI GCNGC 2 cut(s) 449, 498
GlaI GCGC 1 cut(s) 574
GluI GCNGC 2 cut(s) 449, 498
HaeII RGCGCY 1 cut(s) 576
HaeIII GGCC 3 cut(s) 171, 176, 249
HapII CCGG 1 cut(s) 44
HhaI GCGC 1 cut(s) 575
Hin1I GRCGYC 1 cut(s) 573
Hin1II CATG 3 cut(s) 334, 469, 649
Hin6I GCGC 1 cut(s) 573
HinP1I GCGC 1 cut(s) 573
HindIII AAGCTT 1 cut(s) 563
HinfI GANTC 2 cut(s) 27, 324
HpaII CCGG 1 cut(s) 44
Hpy188I TCNGA 5 cut(s) 34, 63, 315, 437, 600
Hpy188III TCNNGA 1 cut(s) 131
Hpy99I CGWCG 2 cut(s) 248, 560
HpyAV CCTTC 3 cut(s) 59, 273, 432
HpyCH4III ACNGT 2 cut(s) 556, 628
HpyCH4IV ACGT 2 cut(s) 107, 586
HpyCH4V TGCA 7 cut(s) 111, 164, 185, 204, 284, 380, 497
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 99, 108, 117, 182, 201
HpyF3I CTNAG 1 cut(s) 222
HpySE526I ACGT 2 cut(s) 107, 586
Hsp92I GRCGYC 1 cut(s) 573
Hsp92II CATG 3 cut(s) 334, 469, 649
HspAI GCGC 1 cut(s) 573
KasI GGCGCC 1 cut(s) 572
Kzo9I GATC 4 cut(s) 305, 385, 529, 649
LpnPI CCDG 9 cut(s) 57, 116, 158, 185, 223, 349, 377, 404, 516
Lsp1109I GCAGC 1 cut(s) 509
MaeII ACGT 2 cut(s) 107, 586
MaeIII GTNAC 1 cut(s) 587
MalI GATC 4 cut(s) 307, 387, 531, 651
MboI GATC 4 cut(s) 305, 385, 529, 649
MboII GAAGA 2 cut(s) 168, 328
MflI RGATCY 1 cut(s) 529
MluCI AATT 2 cut(s) 159, 279
Mly113I GGCGCC 1 cut(s) 573
MlyI GAGTC 2 cut(s) 36, 318
MnlI CCTC 9 cut(s) 187, 217, 261, 312, 348, 533, 602, 606, 634
Mph1103I ATGCAT 1 cut(s) 382
MseI TTAA 2 cut(s) 20, 369
MslI CAYNNNNRTG 1 cut(s) 464
MspCI CTTAAG 1 cut(s) 368
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 2 cut(s) 173, 392
Mva1269I GAATGC 1 cut(s) 380
MvaI CCWGG 2 cut(s) 173, 392
MvnI CGCG 1 cut(s) 304
MwoI GCNNNNNNNGC 6 cut(s) 11, 99, 108, 117, 182, 201
NarI GGCGCC 1 cut(s) 573
NdeII GATC 4 cut(s) 305, 385, 529, 649
NlaIII CATG 3 cut(s) 334, 469, 649
NlaIV GGNNCC 2 cut(s) 346, 574
NmuCI GTSAC 1 cut(s) 587
NsiI ATGCAT 1 cut(s) 382
PceI AGGCCT 1 cut(s) 171
PctI GAATGC 1 cut(s) 380
PflFI GACNNNGTC 1 cut(s) 554
PkrI GCNGC 2 cut(s) 450, 499
PleI GAGTC 2 cut(s) 35, 318
PluTI GGCGCC 1 cut(s) 576
PpsI GAGTC 2 cut(s) 35, 318
Ppu21I YACGTR 1 cut(s) 108
Psp6I CCWGG 2 cut(s) 171, 390
PspGI CCWGG 2 cut(s) 171, 390
PspN4I GGNNCC 2 cut(s) 346, 574
PspPI GGNCC 2 cut(s) 46, 248
PsrI GAACNNNNNNTAC 2 cut(s) 126, 158
PstI CTGCAG 1 cut(s) 499
PsuI RGATCY 1 cut(s) 529
PsyI GACNNNGTC 1 cut(s) 554
RsaI GTAC 2 cut(s) 69, 470
RsaNI GTAC 2 cut(s) 68, 469
RseI CAYNNNNRTG 1 cut(s) 464
SaqAI TTAA 2 cut(s) 20, 369
SatI GCNGC 2 cut(s) 449, 498
Sau3AI GATC 4 cut(s) 305, 385, 529, 649
Sau96I GGNCC 2 cut(s) 46, 248
SchI GAGTC 2 cut(s) 36, 318
ScrFI CCNGG 2 cut(s) 173, 392
SetI ASST 7 cut(s) 59, 110, 443, 567, 589, 594, 645
SfcI CTRYAG 1 cut(s) 495
SfoI GGCGCC 1 cut(s) 574
SinI GGWCC 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 464
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
Sse9I AATT 2 cut(s) 159, 279
SseBI AGGCCT 1 cut(s) 171
SsiI CCGC 2 cut(s) 401, 448
SspDI GGCGCC 1 cut(s) 572
SspI AATATT 1 cut(s) 340
StuI AGGCCT 1 cut(s) 171
StyD4I CCNGG 2 cut(s) 171, 390
StyI CCWWGG 1 cut(s) 53
TaaI ACNGT 2 cut(s) 556, 628
TaiI ACGT 2 cut(s) 110, 589
TaqI TCGA 6 cut(s) 243, 384, 480, 507, 558, 652
TasI AATT 2 cut(s) 159, 279
TatI WGTACW 1 cut(s) 468
TauI GCSGC 1 cut(s) 451
Tru1I TTAA 2 cut(s) 20, 369
Tru9I TTAA 2 cut(s) 20, 369
TscAI CASTG 1 cut(s) 45
TseFI GTSAC 1 cut(s) 587
TseI GCWGC 1 cut(s) 497
Tsp45I GTSAC 1 cut(s) 587
TspDTI ATGAA 1 cut(s) 454
TspRI CASTG 1 cut(s) 45
Tth111I GACNNNGTC 1 cut(s) 554
Vha464I CTTAAG 1 cut(s) 368
VpaK11BI GGWCC 1 cut(s) 46
Zsp2I ATGCAT 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.