Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0014562

Physical Location & Seq

Genomic Coordinates Reverse (-)

14768629 .. 14769968

Gene Structure 1340 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g21690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCTCAGTTAGCAAACTTAAATGGAATCTCTGAAACACTACCAGTTCTACATAGGCTTCCAAGCATTCAAAAAACCCGAAAGCGAGTTAGCATTATTGGATGTTTAGGCAAGAAAAAGGATCATGATGTTCTGGAACAGCCACTACAAACTACAAGAAGGCTGGCATTAGGTCTTGCCTCTATTGCACTTGTTGGGAACTCCTCAAGCGAAGCCGCTCTTGCCGAAGGCAACAACGGGTTTTGGCTTGACGGCCCCCTGCCAGTTCCTTCCGCTGATAACAAAATTGCAAATGAGGAGACGGGTACGCGTTCATTTCTAAAGAACCATCTGTATATGGCTGACATTGGAACCAAAGGGAGAAAGTATAGGCTGAAGAAGTATGCTTTTGATCTCCTGGCTATGGCAGATTTGATTGCACAAGATACACTCAACTATGTCCAAAAGTATCTGCGACTTAAATCCACATTCATGTACTTTGATTTCGACAAAGTTATCACAGCAGCTCCAGTCACCGAGAAGCAACCTCTCACTGACCTTGCTAACAGATTGTTCAACACAGTCGAAAAGCTCGATGGTGCTGTGAGGCAAAGGAACCTGTCCGAGACTGAAACATATTATCAAGACACAACAGTCATCCTCCAAGAAGTCATGGATCGAATGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009055 GO:0009344 GO:0009507 GO:0009521 GO:0009523 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009654 GO:0009767 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0019684 GO:0022900 GO:0031976 GO:0031977 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045156 GO:0055035 GO:0055114 GO:0098796 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbQ

Protein Analysis

223

Amino Acids

24.88

Weight (kDa)

9.06

Isoelectric Point (pI)

43.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbQ	PF05757	1 - 222	1.1e-56	Oxygen evolving enhancer protein 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01440
fragaria_vesca	FvH4_3g21690
malus_domestica	MD03G1212800.v1.1 MD11G1227900.v1.1
prunus_persica	Prupe.4G201300_v2.0.a1
pyrus_communis	pycom03g16160 pycom11g20060
rosa_chinensis	RchiOBHm_Chr5g0037191
rosa_laevigata	RLG00000033755
rosa_multiflora	Rmu_co8022472.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043790
rosa_rugosa	Rorug05G0161500
rosa_samantha	Rh5AG253100 Rh5BG255000 Rh5CG287700 Rh5DG263500
rosa_wichuraiana	Rw5G023380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	632
AccBSI	CCGCTC	1 cut(s)	218
AccII	CGCG	1 cut(s)	310
AciI	CCGC	2 cut(s)	216, 273
AclWI	GGATC	2 cut(s)	129, 663
AcuI	CTGAAG	1 cut(s)	395
AfaI	GTAC	2 cut(s)	307, 476
AfiI	CCNNNNNNNGG	1 cut(s)	403
AflIII	ACRYGT	1 cut(s)	308
AgsI	TTSAA	2 cut(s)	71, 556
AjnI	CCWGG	1 cut(s)	396
AluBI	AGCT	2 cut(s)	506, 571
AluI	AGCT	2 cut(s)	506, 571
Alw26I	GTCTC	2 cut(s)	293, 599
AlwI	GGATC	2 cut(s)	129, 663
AoxI	GGCC	1 cut(s)	253
ApeKI	GCWGC	1 cut(s)	503
AspS9I	GGNCC	1 cut(s)	254
AsuHPI	GGTGA	1 cut(s)	505
BbvI	GCAGC	1 cut(s)	515
BccI	CCATC	2 cut(s)	336, 569
BceAI	ACGGC	1 cut(s)	268
BciT130I	CCWGG	1 cut(s)	398
BcoDI	GTCTC	2 cut(s)	293, 599
BisI	GCNGC	2 cut(s)	216, 504
BlsI	GCNGC	2 cut(s)	217, 505
Bme1390I	CCNGG	1 cut(s)	398
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	3 cut(s)	256, 352, 596
BmrFI	CCNGG	1 cut(s)	398
BpmI	CTGGAG	1 cut(s)	492
BpuEI	CTTGAG	1 cut(s)	190
BsaXI	ACNNNNNCTCC	2 cut(s)	490, 520
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse1I	ACTGG	3 cut(s)	44, 263, 509
BseBI	CCWGG	1 cut(s)	398
BseGI	GGATG	2 cut(s)	107, 636
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMII	CTCAG	1 cut(s)	20
BseNI	ACTGG	3 cut(s)	44, 263, 509
BseRI	GAGGAG	2 cut(s)	193, 311
BseXI	GCAGC	1 cut(s)	515
Bsh1236I	CGCG	1 cut(s)	310
BshFI	GGCC	1 cut(s)	255
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmAI	GTCTC	2 cut(s)	293, 599
BsmBI	CGTCTC	1 cut(s)	293
BsmI	GAATGC	1 cut(s)	66
BsnI	GGCC	1 cut(s)	255
Bsp143I	GATC	3 cut(s)	121, 391, 655
BspACI	CCGC	2 cut(s)	216, 273
BspANI	GGCC	1 cut(s)	255
BspCNI	CTCAG	1 cut(s)	19
BspFNI	CGCG	1 cut(s)	310
BspHI	TCATGA	1 cut(s)	124
BspLI	GGNNCC	3 cut(s)	256, 352, 596
BspPI	GGATC	2 cut(s)	129, 663
BsrBI	CCGCTC	1 cut(s)	218
BsrI	ACTGG	3 cut(s)	44, 263, 509
BssMI	GATC	3 cut(s)	121, 391, 655
Bst2UI	CCWGG	1 cut(s)	398
Bst4CI	ACNGT	2 cut(s)	562, 634
BstC8I	GCNNGC	1 cut(s)	165
BstDEI	CTNAG	1 cut(s)	6
BstF5I	GGATG	2 cut(s)	107, 636
BstFNI	CGCG	1 cut(s)	310
BstKTI	GATC	3 cut(s)	124, 394, 658
BstMAI	GTCTC	2 cut(s)	293, 599
BstMBI	GATC	3 cut(s)	121, 391, 655
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 185, 221
BstNI	CCWGG	1 cut(s)	398
BstSCI	CCNGG	1 cut(s)	396
BstUI	CGCG	1 cut(s)	310
BstV1I	GCAGC	1 cut(s)	515
BsuRI	GGCC	1 cut(s)	255
BtsCI	GGATG	2 cut(s)	107, 636
BtsIMutI	CAGTG	1 cut(s)	531
Cac8I	GCNNGC	1 cut(s)	165
CciI	TCATGA	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	254
Csp6I	GTAC	2 cut(s)	306, 475
CviAII	CATG	4 cut(s)	125, 472, 652, 666
CviQI	GTAC	2 cut(s)	306, 475
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	3 cut(s)	123, 393, 657
DpnII	GATC	3 cut(s)	121, 391, 655
DrdI	GACNNNNNNGTC	1 cut(s)	632
DseDI	GACNNNNNNGTC	1 cut(s)	632
Eco57I	CTGAAG	1 cut(s)	395
EcoRII	CCWGG	1 cut(s)	396
Esp3I	CGTCTC	1 cut(s)	293
FaeI	CATG	4 cut(s)	128, 475, 655, 669
FalI	AAGNNNNNCTT	2 cut(s)	204, 236
FatI	CATG	4 cut(s)	124, 471, 651, 665
Fnu4HI	GCNGC	2 cut(s)	216, 504
FokI	GGATG	2 cut(s)	114, 623
Fsp4HI	GCNGC	2 cut(s)	216, 504
GluI	GCNGC	2 cut(s)	216, 504
GsuI	CTGGAG	1 cut(s)	492
HaeIII	GGCC	1 cut(s)	255
Hin1II	CATG	4 cut(s)	128, 475, 655, 669
HinfI	GANTC	1 cut(s)	27
HphI	GGTGA	1 cut(s)	505
Hpy188I	TCNGA	2 cut(s)	34, 604
Hpy188III	TCNNGA	3 cut(s)	125, 134, 623
HpyAV	CCTTC	3 cut(s)	153, 221, 279
HpyCH4III	ACNGT	2 cut(s)	562, 634
HpyCH4V	TGCA	3 cut(s)	188, 290, 419
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 185, 221
HpyF3I	CTNAG	1 cut(s)	6
Hsp92II	CATG	4 cut(s)	128, 475, 655, 669
Kzo9I	GATC	3 cut(s)	121, 391, 655
LmnI	GCTCC	1 cut(s)	511
LpnPI	CCDG	9 cut(s)	57, 119, 149, 272, 276, 383, 410, 522, 611
Lsp1109I	GCAGC	1 cut(s)	515
MaeIII	GTNAC	1 cut(s)	511
MalI	GATC	3 cut(s)	123, 393, 657
MbiI	CCGCTC	1 cut(s)	218
MboI	GATC	3 cut(s)	121, 391, 655
MboII	GAAGA	1 cut(s)	388
MluCI	AATT	1 cut(s)	285
MluI	ACGCGT	1 cut(s)	308
MnlI	CCTC	6 cut(s)	190, 214, 289, 537, 579, 650
MseI	TTAA	2 cut(s)	20, 459
MslI	CAYNNNNRTG	1 cut(s)	470
MspA1I	CMGCKG	1 cut(s)	275
MspR9I	CCNGG	1 cut(s)	398
Mva1269I	GAATGC	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	398
MvnI	CGCG	1 cut(s)	310
MwoI	GCNNNNNNNGC	3 cut(s)	11, 185, 221
NdeII	GATC	3 cut(s)	121, 391, 655
NlaIII	CATG	4 cut(s)	128, 475, 655, 669
NlaIV	GGNNCC	3 cut(s)	256, 352, 596
NmuCI	GTSAC	1 cut(s)	511
PagI	TCATGA	1 cut(s)	124
PcsI	WCGNNNNNNNCGW	1 cut(s)	570
PctI	GAATGC	1 cut(s)	66
PfeI	GAWTC	1 cut(s)	27
PkrI	GCNGC	2 cut(s)	217, 505
Psp6I	CCWGG	1 cut(s)	396
PspGI	CCWGG	1 cut(s)	396
PspN4I	GGNNCC	3 cut(s)	256, 352, 596
PspPI	GGNCC	1 cut(s)	254
PsrI	GAACNNNNNNTAC	2 cut(s)	129, 161
RsaI	GTAC	2 cut(s)	307, 476
RsaNI	GTAC	2 cut(s)	306, 475
RseI	CAYNNNNRTG	1 cut(s)	470
SaqAI	TTAA	2 cut(s)	20, 459
SatI	GCNGC	2 cut(s)	216, 504
Sau3AI	GATC	3 cut(s)	121, 391, 655
Sau96I	GGNCC	1 cut(s)	254
ScrFI	CCNGG	1 cut(s)	398
SetI	ASST	6 cut(s)	175, 508, 529, 540, 573, 600
SmiMI	CAYNNNNRTG	1 cut(s)	470
SmlI	CTYRAG	1 cut(s)	205
SmoI	CTYRAG	1 cut(s)	205
Sse9I	AATT	1 cut(s)	285
SsiI	CCGC	2 cut(s)	216, 273
StyD4I	CCNGG	1 cut(s)	396
TaaI	ACNGT	2 cut(s)	562, 634
TaqI	TCGA	4 cut(s)	486, 564, 573, 658
TasI	AATT	1 cut(s)	285
TatI	WGTACW	1 cut(s)	474
TauI	GCSGC	1 cut(s)	218
TfiI	GAWTC	1 cut(s)	27
Tru1I	TTAA	2 cut(s)	20, 459
Tru9I	TTAA	2 cut(s)	20, 459
TscAI	CASTG	1 cut(s)	538
TseFI	GTSAC	1 cut(s)	511
TseI	GCWGC	1 cut(s)	503
Tsp45I	GTSAC	1 cut(s)	511
TspDTI	ATGAA	2 cut(s)	303, 460
TspRI	CASTG	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.