Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0014562

Physical Location & Seq

Genomic Coordinates Forward (+)

62474369 .. 62475649

Gene Structure 1281 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00043790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCAGACATTGGAACCAAAGGGAGAAAGTATAGGCTTAAGAAGTATGCTTTTGATCTCCTGGCTATGGCAGATTTGATTGCACAAGATACACTCAACTATGTCCAAAAGTATCTGCGACTTAAATCCACATTCATGTACTTTGATTTTGATAAAGTTATCACTGCAGCTCCAGTCACTGAGAAGCAACCTCTCACTGACCTCGCTAACAGATTGTTCAACACCGTCGAAAAGCTTGATGGTGCTGTGAAGCAAAGGAACCTGTCCGAGACTGAAACATATTATCAAGACACAACAGTTATTCTCCAAGAGGTCATGGATCGAATGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009055 GO:0009344 GO:0009507 GO:0009521 GO:0009523 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009654 GO:0009767 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0019684 GO:0022900 GO:0031976 GO:0031977 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045156 GO:0055035 GO:0055114 GO:0098796 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbQ

Protein Analysis

110

Amino Acids

12.77

Weight (kDa)

7.86

Isoelectric Point (pI)

35.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbQ	PF05757	1 - 110	5.7e-37	Oxygen evolving enhancer protein 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01440
fragaria_vesca	FvH4_3g21690
malus_domestica	MD03G1212800.v1.1 MD11G1227900.v1.1
prunus_persica	Prupe.4G201300_v2.0.a1
pyrus_communis	pycom03g16160 pycom11g20060
rosa_chinensis	RchiOBHm_Chr5g0037191
rosa_laevigata	RLG00000033755
rosa_multiflora	Rmu_co8022472.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043790
rosa_rugosa	Rorug05G0161500
rosa_samantha	Rh5AG253100 Rh5BG255000 Rh5CG287700 Rh5DG263500
rosa_wichuraiana	Rw5G023380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	327
AfaI	GTAC	1 cut(s)	140
AfiI	CCNNNNNNNGG	1 cut(s)	67
AflII	CTTAAG	1 cut(s)	38
AgsI	TTSAA	1 cut(s)	220
AjnI	CCWGG	1 cut(s)	60
AluBI	AGCT	2 cut(s)	170, 235
AluI	AGCT	2 cut(s)	170, 235
Alw26I	GTCTC	1 cut(s)	263
AlwI	GGATC	1 cut(s)	327
AlwNI	CAGNNNCTG	1 cut(s)	179
ApeKI	GCWGC	1 cut(s)	167
BbvI	GCAGC	1 cut(s)	179
BccI	CCATC	1 cut(s)	233
BciT130I	CCWGG	1 cut(s)	62
BcoDI	GTCTC	1 cut(s)	263
BfmI	CTRYAG	1 cut(s)	165
BfrI	CTTAAG	1 cut(s)	38
BisI	GCNGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	169
Bme1390I	CCNGG	1 cut(s)	62
BmiI	GGNNCC	2 cut(s)	16, 260
BmrFI	CCNGG	1 cut(s)	62
BpmI	CTGGAG	1 cut(s)	156
BsaXI	ACNNNNNCTCC	2 cut(s)	154, 184
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	173
BseBI	CCWGG	1 cut(s)	62
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	173
BseXI	GCAGC	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	263
Bsp143I	GATC	2 cut(s)	55, 319
BspCNI	CTCAG	1 cut(s)	172
BspLI	GGNNCC	2 cut(s)	16, 260
BspMAI	CTGCAG	1 cut(s)	169
BspPI	GGATC	1 cut(s)	327
BspTI	CTTAAG	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	173
BssMI	GATC	2 cut(s)	55, 319
Bst2UI	CCWGG	1 cut(s)	62
Bst4CI	ACNGT	2 cut(s)	226, 298
BstAFI	CTTAAG	1 cut(s)	38
BstDEI	CTNAG	1 cut(s)	180
BstKTI	GATC	2 cut(s)	58, 322
BstMAI	GTCTC	1 cut(s)	263
BstMBI	GATC	2 cut(s)	55, 319
BstNI	CCWGG	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	60
BstSFI	CTRYAG	1 cut(s)	165
BstV1I	GCAGC	1 cut(s)	179
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	3 cut(s)	162, 177, 195
CaiI	CAGNNNCTG	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	139
CviAII	CATG	3 cut(s)	136, 316, 330
CviJI	RGCY	4 cut(s)	37, 65, 170, 235
CviKI_1	RGCY	4 cut(s)	37, 65, 170, 235
CviQI	GTAC	1 cut(s)	139
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	2 cut(s)	57, 321
DpnII	GATC	2 cut(s)	55, 319
EcoRII	CCWGG	1 cut(s)	60
FaeI	CATG	3 cut(s)	139, 319, 333
FaiI	YATR	8 cut(s)	33, 48, 68, 102, 137, 280, 317, 331
FatI	CATG	3 cut(s)	135, 315, 329
Fnu4HI	GCNGC	1 cut(s)	168
Fsp4HI	GCNGC	1 cut(s)	168
GluI	GCNGC	1 cut(s)	168
GsuI	CTGGAG	1 cut(s)	156
Hin1II	CATG	3 cut(s)	139, 319, 333
HindIII	AAGCTT	1 cut(s)	233
Hpy188I	TCNGA	1 cut(s)	268
Hpy188III	TCNNGA	1 cut(s)	287
Hpy99I	CGWCG	1 cut(s)	230
HpyCH4III	ACNGT	2 cut(s)	226, 298
HpyCH4V	TGCA	2 cut(s)	83, 167
HpyF3I	CTNAG	1 cut(s)	180
Hsp92II	CATG	3 cut(s)	139, 319, 333
Kzo9I	GATC	2 cut(s)	55, 319
LmnI	GCTCC	1 cut(s)	175
LpnPI	CCDG	4 cut(s)	47, 74, 186, 275
Lsp1109I	GCAGC	1 cut(s)	179
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	2 cut(s)	57, 321
MboI	GATC	2 cut(s)	55, 319
MnlI	CCTC	3 cut(s)	201, 212, 304
MseI	TTAA	2 cut(s)	39, 123
MslI	CAYNNNNRTG	1 cut(s)	134
MspCI	CTTAAG	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	62
MvaI	CCWGG	1 cut(s)	62
NdeII	GATC	2 cut(s)	55, 319
NlaIII	CATG	3 cut(s)	139, 319, 333
NlaIV	GGNNCC	2 cut(s)	16, 260
NmuCI	GTSAC	1 cut(s)	175
PkrI	GCNGC	1 cut(s)	169
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	2 cut(s)	16, 260
PstI	CTGCAG	1 cut(s)	169
PstNI	CAGNNNCTG	1 cut(s)	179
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
RseI	CAYNNNNRTG	1 cut(s)	134
SaqAI	TTAA	2 cut(s)	39, 123
SatI	GCNGC	1 cut(s)	168
Sau3AI	GATC	2 cut(s)	55, 319
ScrFI	CCNGG	1 cut(s)	62
SetI	ASST	6 cut(s)	172, 193, 204, 237, 264, 315
SfcI	CTRYAG	1 cut(s)	165
SmiMI	CAYNNNNRTG	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	60
TaaI	ACNGT	2 cut(s)	226, 298
TaqI	TCGA	2 cut(s)	228, 322
TatI	WGTACW	1 cut(s)	138
Tru1I	TTAA	2 cut(s)	39, 123
Tru9I	TTAA	2 cut(s)	39, 123
TscAI	CASTG	3 cut(s)	169, 184, 202
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	1 cut(s)	167
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	1 cut(s)	124
TspRI	CASTG	3 cut(s)	169, 184, 202
Vha464I	CTTAAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.