Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0014562

Physical Location & Seq

Genomic Coordinates Reverse (-)

12516792 .. 12518009

Gene Structure 1218 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G201300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCTCGTTTGGCAAACTTAAATGGAGTCTCTGAAACACTGCCAGCCATACCAAGGCTTCCAGGCATACAAGGGACCCAAAAGAGAGTGAGCATTGTTGGCTTTATGGGCAAGAAAAAAGATGATTTTCAGGAACAGCCACTACAAACTACAAGAAGACTAGCATTAGGCCTCGCCTCTATTGCACTTGTTGGGAACTCCTGCAATGGAGTCTCTCTTGCTGAGGGCAACGGGTTCTGGATCGACGGCCCCCTGCCCGTGCCTTCTGCTGAAAACAAAATTGCAAATGAGAAGACGGGGACTCGTTCTTTTCTGAAAAAGGGTCTCTACATGGCAAACATTGGAACCAAAGGGAGGAAGTTTAGGCTTAAGAAATATGCATTTGATCTCCTGGCAATGGCAGATTTGATTGCACAAGATACCCTAAACTATGTTAGAAGGTTCCTGCGGCTAAAATCCACATTCATGTACTTTGATTTCGACCAAGTTATCTCTGCAGCACCAGTCGATGAGAAACAACCTCTCACTGATCTTGCTAATAGATTGTTTGACACCGTAGAAAAGCTTGATGGCGCTGTGAGGCAACGCAACCTATCCGAGACTGAATCATATTATAAAGACACAACAGTTATTCTCCAGGAGGTCATGGATCGAATGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009055 GO:0009344 GO:0009507 GO:0009521 GO:0009523 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009654 GO:0009767 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0019684 GO:0022900 GO:0031976 GO:0031977 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045156 GO:0055035 GO:0055114 GO:0098796 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbQ

Protein Analysis

221

Amino Acids

24.53

Weight (kDa)

9.49

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01440
fragaria_vesca	FvH4_3g21690
malus_domestica	MD03G1212800.v1.1 MD11G1227900.v1.1
prunus_persica	Prupe.4G201300_v2.0.a1
pyrus_communis	pycom03g16160 pycom11g20060
rosa_chinensis	RchiOBHm_Chr5g0037191
rosa_laevigata	RLG00000033755
rosa_multiflora	Rmu_co8022472.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043790
rosa_rugosa	Rorug05G0161500
rosa_samantha	Rh5AG253100 Rh5BG255000 Rh5CG287700 Rh5DG263500
rosa_wichuraiana	Rw5G023380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	615
AciI	CCGC	1 cut(s)	448
AclWI	GGATC	2 cut(s)	248, 657
AfaI	GTAC	1 cut(s)	470
AfiI	CCNNNNNNNGG	3 cut(s)	54, 354, 397
AflII	CTTAAG	1 cut(s)	368
AjnI	CCWGG	3 cut(s)	61, 390, 636
AluBI	AGCT	1 cut(s)	565
AluI	AGCT	1 cut(s)	565
Alw26I	GTCTC	4 cut(s)	34, 217, 329, 593
AlwI	GGATC	2 cut(s)	248, 657
AoxI	GGCC	2 cut(s)	169, 247
ApeKI	GCWGC	1 cut(s)	497
AspLEI	GCGC	1 cut(s)	575
AspS9I	GGNCC	2 cut(s)	75, 248
AvaII	GGWCC	1 cut(s)	75
BbsI	GAAGAC	2 cut(s)	163, 299
BbvCI	CCTCAGC	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	509
BccI	CCATC	1 cut(s)	563
BceAI	ACGGC	1 cut(s)	262
BciT130I	CCWGG	3 cut(s)	63, 392, 638
BcoDI	GTCTC	4 cut(s)	34, 217, 329, 593
BfaI	CTAG	1 cut(s)	161
BfmI	CTRYAG	1 cut(s)	495
BfoI	RGCGCY	1 cut(s)	576
BfrI	CTTAAG	1 cut(s)	368
BisI	GCNGC	2 cut(s)	449, 498
BlsI	GCNGC	2 cut(s)	450, 499
Bme1390I	CCNGG	3 cut(s)	63, 392, 638
Bme18I	GGWCC	1 cut(s)	75
BmgT120I	GGNCC	2 cut(s)	75, 248
BmiI	GGNNCC	5 cut(s)	76, 77, 250, 346, 443
BmrFI	CCNGG	3 cut(s)	63, 392, 638
BpiI	GAAGAC	2 cut(s)	163, 299
BpmI	CTGGAG	1 cut(s)	620
Bpu10I	CCTNAGC	1 cut(s)	222
BsaI	GGTCTC	1 cut(s)	329
BsaJI	CCNNGG	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	3 cut(s)	54, 354, 397
Bse1I	ACTGG	1 cut(s)	503
Bse3DI	GCAATG	2 cut(s)	211, 402
BseBI	CCWGG	3 cut(s)	63, 392, 638
BseDI	CCNNGG	1 cut(s)	53
BseLI	CCNNNNNNNGG	3 cut(s)	54, 354, 397
BseMI	GCAATG	2 cut(s)	211, 402
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	1 cut(s)	503
BseXI	GCAGC	1 cut(s)	509
BshFI	GGCC	2 cut(s)	171, 249
BslFI	GGGAC	2 cut(s)	88, 313
BslI	CCNNNNNNNGG	3 cut(s)	54, 354, 397
BsmAI	GTCTC	4 cut(s)	34, 217, 329, 593
BsmFI	GGGAC	2 cut(s)	88, 313
BsnI	GGCC	2 cut(s)	171, 249
Bso31I	GGTCTC	1 cut(s)	329
Bsp143I	GATC	4 cut(s)	240, 385, 529, 649
BspACI	CCGC	1 cut(s)	448
BspANI	GGCC	2 cut(s)	171, 249
BspCNI	CTCAG	1 cut(s)	214
BspLI	GGNNCC	5 cut(s)	76, 77, 250, 346, 443
BspMAI	CTGCAG	1 cut(s)	499
BspPI	GGATC	2 cut(s)	248, 657
BspTI	CTTAAG	1 cut(s)	368
BspTNI	GGTCTC	1 cut(s)	329
BsrDI	GCAATG	2 cut(s)	211, 402
BsrI	ACTGG	1 cut(s)	503
BssECI	CCNNGG	1 cut(s)	53
BssMI	GATC	4 cut(s)	240, 385, 529, 649
BssT1I	CCWWGG	1 cut(s)	53
Bst2UI	CCWGG	3 cut(s)	63, 392, 638
Bst4CI	ACNGT	2 cut(s)	556, 628
BstAFI	CTTAAG	1 cut(s)	368
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	1 cut(s)	222
BstH2I	RGCGCY	1 cut(s)	576
BstHHI	GCGC	1 cut(s)	575
BstKTI	GATC	4 cut(s)	243, 388, 532, 652
BstMAI	GTCTC	4 cut(s)	34, 217, 329, 593
BstMBI	GATC	4 cut(s)	240, 385, 529, 649
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 99, 108, 182
BstNI	CCWGG	3 cut(s)	63, 392, 638
BstSCI	CCNGG	3 cut(s)	61, 390, 636
BstSFI	CTRYAG	1 cut(s)	495
BstV1I	GCAGC	1 cut(s)	509
BstV2I	GAAGAC	2 cut(s)	163, 299
BsuRI	GGCC	2 cut(s)	171, 249
BtsI	GCAGTG	1 cut(s)	38
BtsIMutI	CAGTG	2 cut(s)	38, 525
Cac8I	GCNNGC	1 cut(s)	45
CfoI	GCGC	1 cut(s)	575
Cfr13I	GGNCC	2 cut(s)	75, 248
Csp6I	GTAC	1 cut(s)	469
CviAII	CATG	4 cut(s)	331, 466, 646, 660
CviQI	GTAC	1 cut(s)	469
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	4 cut(s)	242, 387, 531, 651
DpnII	GATC	4 cut(s)	240, 385, 529, 649
Eco130I	CCWWGG	1 cut(s)	53
Eco147I	AGGCCT	1 cut(s)	171
Eco31I	GGTCTC	1 cut(s)	329
Eco47I	GGWCC	1 cut(s)	75
EcoO109I	RGGNCCY	1 cut(s)	75
EcoRII	CCWGG	3 cut(s)	61, 390, 636
EcoT14I	CCWWGG	1 cut(s)	53
EcoT22I	ATGCAT	1 cut(s)	382
ErhI	CCWWGG	1 cut(s)	53
FaeI	CATG	4 cut(s)	334, 469, 649, 663
FaqI	GGGAC	2 cut(s)	88, 313
FatI	CATG	4 cut(s)	330, 465, 645, 659
Fnu4HI	GCNGC	2 cut(s)	449, 498
Fsp4HI	GCNGC	2 cut(s)	449, 498
FspBI	CTAG	1 cut(s)	161
GlaI	GCGC	1 cut(s)	574
GluI	GCNGC	2 cut(s)	449, 498
GsuI	CTGGAG	1 cut(s)	620
HaeII	RGCGCY	1 cut(s)	576
HaeIII	GGCC	2 cut(s)	171, 249
HhaI	GCGC	1 cut(s)	575
Hin1II	CATG	4 cut(s)	334, 469, 649, 663
Hin6I	GCGC	1 cut(s)	573
HinP1I	GCGC	1 cut(s)	573
HindIII	AAGCTT	1 cut(s)	563
HinfI	GANTC	4 cut(s)	27, 210, 301, 605
Hpy188I	TCNGA	3 cut(s)	34, 315, 598
Hpy188III	TCNNGA	2 cut(s)	131, 238
Hpy99I	CGWCG	1 cut(s)	248
HpyAV	CCTTC	2 cut(s)	273, 432
HpyCH4III	ACNGT	2 cut(s)	556, 628
HpyCH4V	TGCA	6 cut(s)	185, 204, 284, 380, 413, 497
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 99, 108, 182
HpyF3I	CTNAG	1 cut(s)	222
Hsp92II	CATG	4 cut(s)	334, 469, 649, 663
HspAI	GCGC	1 cut(s)	573
KflI	GGGWCCC	1 cut(s)	75
Kzo9I	GATC	4 cut(s)	240, 385, 529, 649
Lsp1109I	GCAGC	1 cut(s)	509
MaeI	CTAG	1 cut(s)	161
MalI	GATC	4 cut(s)	242, 387, 531, 651
MboI	GATC	4 cut(s)	240, 385, 529, 649
MboII	GAAGA	2 cut(s)	168, 304
MluCI	AATT	1 cut(s)	279
MlyI	GAGTC	3 cut(s)	36, 219, 295
MnlI	CCTC	7 cut(s)	182, 187, 217, 348, 531, 573, 634
Mph1103I	ATGCAT	1 cut(s)	382
MseI	TTAA	2 cut(s)	20, 369
MslI	CAYNNNNRTG	1 cut(s)	464
MspCI	CTTAAG	1 cut(s)	368
MspR9I	CCNGG	3 cut(s)	63, 392, 638
MvaI	CCWGG	3 cut(s)	63, 392, 638
MwoI	GCNNNNNNNGC	4 cut(s)	11, 99, 108, 182
NdeII	GATC	4 cut(s)	240, 385, 529, 649
NlaIII	CATG	4 cut(s)	334, 469, 649, 663
NlaIV	GGNNCC	5 cut(s)	76, 77, 250, 346, 443
NsiI	ATGCAT	1 cut(s)	382
PceI	AGGCCT	1 cut(s)	171
PfeI	GAWTC	1 cut(s)	605
PfoI	TCCNGGA	1 cut(s)	636
PkrI	GCNGC	2 cut(s)	450, 499
PleI	GAGTC	3 cut(s)	35, 218, 295
PpsI	GAGTC	3 cut(s)	35, 218, 295
PpuMI	RGGWCCY	1 cut(s)	75
PsiI	TTATAA	1 cut(s)	615
Psp5II	RGGWCCY	1 cut(s)	75
Psp6I	CCWGG	3 cut(s)	61, 390, 636
PspGI	CCWGG	3 cut(s)	61, 390, 636
PspN4I	GGNNCC	5 cut(s)	76, 77, 250, 346, 443
PspPI	GGNCC	2 cut(s)	75, 248
PspPPI	RGGWCCY	1 cut(s)	75
PsrI	GAACNNNNNNTAC	2 cut(s)	126, 158
PstI	CTGCAG	1 cut(s)	499
RsaI	GTAC	1 cut(s)	470
RsaNI	GTAC	1 cut(s)	469
RseI	CAYNNNNRTG	1 cut(s)	464
SaqAI	TTAA	2 cut(s)	20, 369
SatI	GCNGC	2 cut(s)	449, 498
Sau3AI	GATC	4 cut(s)	240, 385, 529, 649
Sau96I	GGNCC	2 cut(s)	75, 248
SchI	GAGTC	3 cut(s)	36, 219, 295
ScrFI	CCNGG	3 cut(s)	63, 392, 638
SetI	ASST	5 cut(s)	443, 523, 567, 594, 645
SfcI	CTRYAG	1 cut(s)	495
SinI	GGWCC	1 cut(s)	75
SmiMI	CAYNNNNRTG	1 cut(s)	464
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	1 cut(s)	279
SseBI	AGGCCT	1 cut(s)	171
SsiI	CCGC	1 cut(s)	448
SspMI	CTAG	1 cut(s)	161
StuI	AGGCCT	1 cut(s)	171
StyD4I	CCNGG	3 cut(s)	61, 390, 636
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	2 cut(s)	556, 628
TaqI	TCGA	4 cut(s)	243, 480, 507, 652
TasI	AATT	1 cut(s)	279
TatI	WGTACW	1 cut(s)	468
TauI	GCSGC	1 cut(s)	451
TfiI	GAWTC	1 cut(s)	605
Tru1I	TTAA	2 cut(s)	20, 369
Tru9I	TTAA	2 cut(s)	20, 369
TscAI	CASTG	2 cut(s)	45, 532
TseI	GCWGC	1 cut(s)	497
TspDTI	ATGAA	1 cut(s)	454
TspRI	CASTG	2 cut(s)	45, 532
Vha464I	CTTAAG	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	75
XspI	CTAG	1 cut(s)	161
Zsp2I	ATGCAT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.