Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0014562

Physical Location & Seq

Genomic Coordinates Forward (+)

33177409 .. 33178275

Gene Structure 867 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1227900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGTCTCACCTGGAAAACTTTAATGGAGTCTCCGAAACACTGCCGGTCATTCCAAGGTTTCCGAGCGTACAAACAACCAGAAAGAAAGCGAGCATTATTTGCTTTATGAGCAAGAAAAGTGATGGTTTGCAGGAACAGCCACTACAAACTACAAGAAGACTTGCATTAGGCCTTGCCTCTATTGCACTTGTTGGCAACTCCTGCAACGGTGTCTCTCTTGCTGAGGGCAATGGGTTCTGGCTCGACGGCCCTCTGCCTGTGCCTTCTGCTGAAAACAAAATTGCAAATGAGAAGACGGGAACGCGGTCTTTTCTGAAAAGGGGAATCTACATGGCAAATATTGGAACGAAAGGGAGGAAGTTCAGGCTTAAGAAATATGCTTTTGATCTTCTGGCAATGGCGGATTTGATTGCAAAAGATACATTAAACTATGTTCGAAGGTATCTGCGGTTAAAATCCACTTTCATGTACTTTGATTTCGATCGAGTAATCTCTGCAGCTCCAGTGGATGAGAAACAGCCCCTTACTGATCTTGCTAACAGATTATTTGACACGGTCGAAAAGCTTGATGGTGCCGTGAAGCAGCGCGACCTGCTTCAGACAGAAACATACTATAAAGACACAACAGTTATTCTCCAAGAGGTCATGGATCGAATGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009055 GO:0009344 GO:0009507 GO:0009521 GO:0009523 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009654 GO:0009767 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0019684 GO:0022900 GO:0031976 GO:0031977 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045156 GO:0055035 GO:0055114 GO:0098796 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbQ

Protein Analysis

221

Amino Acids

24.78

Weight (kDa)

9.47

Isoelectric Point (pI)

47.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbQ	PF05757	1 - 219	3.9e-54	Oxygen evolving enhancer protein 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01440
fragaria_vesca	FvH4_3g21690
malus_domestica	MD03G1212800.v1.1 MD11G1227900.v1.1
prunus_persica	Prupe.4G201300_v2.0.a1
pyrus_communis	pycom03g16160 pycom11g20060
rosa_chinensis	RchiOBHm_Chr5g0037191
rosa_laevigata	RLG00000033755
rosa_multiflora	Rmu_co8022472.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043790
rosa_rugosa	Rorug05G0161500
rosa_samantha	Rh5AG253100 Rh5BG255000 Rh5CG287700 Rh5DG263500
rosa_wichuraiana	Rw5G023380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	600
AccB1I	GGYRCC	1 cut(s)	572
AccII	CGCG	2 cut(s)	304, 588
AciI	CCGC	3 cut(s)	304, 401, 448
AclWI	GGATC	1 cut(s)	657
AcuI	CTGAAG	1 cut(s)	581
AfaI	GTAC	2 cut(s)	69, 470
AflII	CTTAAG	1 cut(s)	368
AjnI	CCWGG	1 cut(s)	9
AluBI	AGCT	2 cut(s)	500, 565
AluI	AGCT	2 cut(s)	500, 565
Alw26I	GTCTC	3 cut(s)	9, 34, 217
AlwI	GGATC	1 cut(s)	657
AoxI	GGCC	2 cut(s)	169, 247
ApeKI	GCWGC	2 cut(s)	497, 583
AspLEI	GCGC	1 cut(s)	588
AspS9I	GGNCC	1 cut(s)	248
AsuII	TTCGAA	1 cut(s)	436
BanI	GGYRCC	1 cut(s)	572
BbsI	GAAGAC	2 cut(s)	163, 299
BbvCI	CCTCAGC	1 cut(s)	222
BbvI	GCAGC	2 cut(s)	509, 595
BccI	CCATC	2 cut(s)	116, 563
BceAI	ACGGC	2 cut(s)	262, 560
BciT130I	CCWGG	1 cut(s)	11
BcoDI	GTCTC	3 cut(s)	9, 34, 217
BfmI	CTRYAG	1 cut(s)	495
BfrI	CTTAAG	1 cut(s)	368
BfuAI	ACCTGC	1 cut(s)	600
BisI	GCNGC	2 cut(s)	498, 584
BlsI	GCNGC	2 cut(s)	499, 585
Bme1390I	CCNGG	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	248
BmiI	GGNNCC	1 cut(s)	574
BmrFI	CCNGG	1 cut(s)	11
BpiI	GAAGAC	2 cut(s)	163, 299
BpmI	CTGGAG	1 cut(s)	486
Bpu10I	CCTNAGC	1 cut(s)	222
Bpu14I	TTCGAA	1 cut(s)	436
BsaBI	GATNNNNATC	1 cut(s)	480
BsaJI	CCNNGG	1 cut(s)	53
Bse118I	RCCGGY	1 cut(s)	43
Bse1I	ACTGG	1 cut(s)	503
Bse3DI	GCAATG	2 cut(s)	235, 402
Bse8I	GATNNNNATC	1 cut(s)	480
BseBI	CCWGG	1 cut(s)	11
BseDI	CCNNGG	1 cut(s)	53
BseGI	GGATG	1 cut(s)	514
BseJI	GATNNNNATC	1 cut(s)	480
BseMI	GCAATG	2 cut(s)	235, 402
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	1 cut(s)	503
BseXI	GCAGC	2 cut(s)	509, 595
Bsh1236I	CGCG	2 cut(s)	304, 588
Bsh1285I	CGRYCG	2 cut(s)	484, 558
BshFI	GGCC	2 cut(s)	171, 249
BshNI	GGYRCC	1 cut(s)	572
BsiEI	CGRYCG	2 cut(s)	484, 558
BsiSI	CCGG	1 cut(s)	44
BsmAI	GTCTC	3 cut(s)	9, 34, 217
BsnI	GGCC	2 cut(s)	171, 249
Bsp119I	TTCGAA	1 cut(s)	436
Bsp143I	GATC	4 cut(s)	385, 481, 529, 649
BspACI	CCGC	3 cut(s)	304, 401, 448
BspANI	GGCC	2 cut(s)	171, 249
BspCNI	CTCAG	1 cut(s)	214
BspFNI	CGCG	2 cut(s)	304, 588
BspLI	GGNNCC	1 cut(s)	574
BspMAI	CTGCAG	1 cut(s)	499
BspMI	ACCTGC	1 cut(s)	600
BspPI	GGATC	1 cut(s)	657
BspT104I	TTCGAA	1 cut(s)	436
BspT107I	GGYRCC	1 cut(s)	572
BspTI	CTTAAG	1 cut(s)	368
BsrDI	GCAATG	2 cut(s)	235, 402
BsrFI	RCCGGY	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	503
BssAI	RCCGGY	1 cut(s)	43
BssECI	CCNNGG	1 cut(s)	53
BssMI	GATC	4 cut(s)	385, 481, 529, 649
BssT1I	CCWWGG	1 cut(s)	53
Bst2UI	CCWGG	1 cut(s)	11
Bst4CI	ACNGT	3 cut(s)	209, 556, 628
BstAFI	CTTAAG	1 cut(s)	368
BstAPI	GCANNNNNTGC	2 cut(s)	99, 201
BstBI	TTCGAA	1 cut(s)	436
BstC8I	GCNNGC	1 cut(s)	91
BstDEI	CTNAG	1 cut(s)	222
BstF5I	GGATG	1 cut(s)	514
BstFNI	CGCG	2 cut(s)	304, 588
BstHHI	GCGC	1 cut(s)	588
BstKTI	GATC	4 cut(s)	388, 484, 532, 652
BstMAI	GTCTC	3 cut(s)	9, 34, 217
BstMBI	GATC	4 cut(s)	385, 481, 529, 649
BstMCI	CGRYCG	2 cut(s)	484, 558
BstMWI	GCNNNNNNNGC	6 cut(s)	99, 108, 136, 182, 201, 592
BstNI	CCWGG	1 cut(s)	11
BstSCI	CCNGG	1 cut(s)	9
BstSFI	CTRYAG	1 cut(s)	495
BstUI	CGCG	2 cut(s)	304, 588
BstV1I	GCAGC	2 cut(s)	509, 595
BstV2I	GAAGAC	2 cut(s)	163, 299
BsuRI	GGCC	2 cut(s)	171, 249
BtsCI	GGATG	1 cut(s)	514
BtsI	GCAGTG	1 cut(s)	38
BtsIMutI	CAGTG	2 cut(s)	38, 510
BveI	ACCTGC	1 cut(s)	600
Cac8I	GCNNGC	1 cut(s)	91
CfoI	GCGC	1 cut(s)	588
Cfr10I	RCCGGY	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	248
Csp6I	GTAC	2 cut(s)	68, 469
CviAII	CATG	3 cut(s)	331, 466, 646
CviJI	RGCY	8 cut(s)	139, 171, 241, 249, 367, 500, 520, 565
CviKI_1	RGCY	8 cut(s)	139, 171, 241, 249, 367, 500, 520, 565
CviQI	GTAC	2 cut(s)	68, 469
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	4 cut(s)	387, 483, 531, 651
DpnII	GATC	4 cut(s)	385, 481, 529, 649
EciI	GGCGGA	1 cut(s)	416
Eco130I	CCWWGG	1 cut(s)	53
Eco147I	AGGCCT	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	581
EcoRII	CCWGG	1 cut(s)	9
EcoT14I	CCWWGG	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	53
FaeI	CATG	3 cut(s)	334, 469, 649
FaiI	YATR	8 cut(s)	107, 332, 378, 432, 467, 610, 615, 647
FatI	CATG	3 cut(s)	330, 465, 645
Fnu4HI	GCNGC	2 cut(s)	498, 584
FokI	GGATG	1 cut(s)	521
Fsp4HI	GCNGC	2 cut(s)	498, 584
GlaI	GCGC	1 cut(s)	587
GluI	GCNGC	2 cut(s)	498, 584
GsuI	CTGGAG	1 cut(s)	486
HaeIII	GGCC	2 cut(s)	171, 249
HapII	CCGG	1 cut(s)	44
HhaI	GCGC	1 cut(s)	588
Hin1II	CATG	3 cut(s)	334, 469, 649
Hin6I	GCGC	1 cut(s)	586
HinP1I	GCGC	1 cut(s)	586
HindIII	AAGCTT	1 cut(s)	563
HinfI	GANTC	2 cut(s)	27, 324
HpaII	CCGG	1 cut(s)	44
Hpy188I	TCNGA	4 cut(s)	34, 63, 315, 600
Hpy99I	CGWCG	1 cut(s)	248
HpyAV	CCTTC	2 cut(s)	273, 432
HpyCH4III	ACNGT	3 cut(s)	209, 556, 628
HpyCH4V	TGCA	7 cut(s)	130, 164, 185, 204, 284, 413, 497
HpyF10VI	GCNNNNNNNGC	6 cut(s)	99, 108, 136, 182, 201, 592
HpyF3I	CTNAG	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	334, 469, 649
HspAI	GCGC	1 cut(s)	586
Kzo9I	GATC	4 cut(s)	385, 481, 529, 649
LmnI	GCTCC	1 cut(s)	505
Lsp1109I	GCAGC	2 cut(s)	509, 595
MalI	GATC	4 cut(s)	387, 483, 531, 651
MboI	GATC	4 cut(s)	385, 481, 529, 649
MboII	GAAGA	3 cut(s)	168, 304, 380
MluCI	AATT	1 cut(s)	279
MlyI	GAGTC	1 cut(s)	36
MnlI	CCTC	5 cut(s)	187, 217, 261, 348, 634
MseI	TTAA	4 cut(s)	21, 369, 425, 452
MslI	CAYNNNNRTG	1 cut(s)	464
MspCI	CTTAAG	1 cut(s)	368
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	11
MvaI	CCWGG	1 cut(s)	11
MvnI	CGCG	2 cut(s)	304, 588
MwoI	GCNNNNNNNGC	6 cut(s)	99, 108, 136, 182, 201, 592
NdeII	GATC	4 cut(s)	385, 481, 529, 649
NlaIII	CATG	3 cut(s)	334, 469, 649
NlaIV	GGNNCC	1 cut(s)	574
NspV	TTCGAA	1 cut(s)	436
PceI	AGGCCT	1 cut(s)	171
PfeI	GAWTC	1 cut(s)	324
PflFI	GACNNNGTC	1 cut(s)	554
PkrI	GCNGC	2 cut(s)	499, 585
Ple19I	CGATCG	1 cut(s)	484
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	9
PspGI	CCWGG	1 cut(s)	9
PspN4I	GGNNCC	1 cut(s)	574
PspPI	GGNCC	1 cut(s)	248
PsrI	GAACNNNNNNTAC	2 cut(s)	126, 158
PstI	CTGCAG	1 cut(s)	499
PsyI	GACNNNGTC	1 cut(s)	554
PvuI	CGATCG	1 cut(s)	484
RsaI	GTAC	2 cut(s)	69, 470
RsaNI	GTAC	2 cut(s)	68, 469
RseI	CAYNNNNRTG	1 cut(s)	464
SaqAI	TTAA	4 cut(s)	21, 369, 425, 452
SatI	GCNGC	2 cut(s)	498, 584
Sau3AI	GATC	4 cut(s)	385, 481, 529, 649
Sau96I	GGNCC	1 cut(s)	248
SchI	GAGTC	1 cut(s)	36
ScrFI	CCNGG	1 cut(s)	11
SetI	ASST	7 cut(s)	12, 59, 443, 502, 567, 594, 645
SfcI	CTRYAG	1 cut(s)	495
SfuI	TTCGAA	1 cut(s)	436
SmiMI	CAYNNNNRTG	1 cut(s)	464
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	1 cut(s)	279
SseBI	AGGCCT	1 cut(s)	171
SsiI	CCGC	3 cut(s)	304, 401, 448
SspI	AATATT	1 cut(s)	340
StuI	AGGCCT	1 cut(s)	171
StyD4I	CCNGG	1 cut(s)	9
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	3 cut(s)	209, 556, 628
TaqI	TCGA	6 cut(s)	243, 436, 480, 484, 558, 652
TasI	AATT	1 cut(s)	279
TatI	WGTACW	1 cut(s)	468
TfiI	GAWTC	1 cut(s)	324
Tru1I	TTAA	4 cut(s)	21, 369, 425, 452
Tru9I	TTAA	4 cut(s)	21, 369, 425, 452
TscAI	CASTG	2 cut(s)	45, 510
TseI	GCWGC	2 cut(s)	497, 583
TspDTI	ATGAA	1 cut(s)	454
TspRI	CASTG	2 cut(s)	45, 510
Tth111I	GACNNNGTC	1 cut(s)	554
Vha464I	CTTAAG	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.