Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011710

Physical Location & Seq

Genomic Coordinates Reverse (-)

190831 .. 193721

Gene Structure 2891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G01490.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGAAGGAGAAGGCGGAGAGTGGTGGAGGAGTAGGATACGTGAGAGCAGATCAGATAGATTTAAAGAGTCTGGACGAGCAATTGCAGAGACACTTAAGTAAAGCATGGACGATGGAGAAGAGGAAGAGTTTGAGTGATGGTGAAGATAACGTCAATAACACCCGACATAACCAGAACAACTTCGGACATCGACAGCTTGTGTTTCAGAGGCCGCTTCTTGGTGGTGGATATAGCAACAACAACAACAGCAGCAAGAACGACATAATTAGGTCGACCGAGGTTGAGAAGTCGAGGAGAGAGTGGGAGATTGATCCTTCTAAGCTTATAATCAAAAGTGTGATTGCTAGAGGTACTTTTGGTACGGTTCACCGTGGAATCTACGATGGTCAAGATGTCGCCGTAAAACTACTAGACTGGGGAGAAGAGGGGCACAGGTCAGACGCAGAGATAGCTTCGCTTAGAGCTGCTTTCACTCAAGAAGTTGCTGTGTGGCATAAGCTCGACCATCCCAATGTCACCAAGTTCATAGGAGCGGCGATGGGGACATCGGAGATGAGCATACAAACGGAAAACGGGCAAATGGGAATGCCGAGTAACGTTTGCTGTGTCGTGGTTGAGTATTGCCCCGGCGGCGCTCTCAAGTCATTCCTCATCAAAACTCGCCGCCGCAAACTCGCCTTCAAAGTCGTTATCCAACTCTCCCTTGATCTTGCTCGCGGGTTGAGTTACTTGCACTCTCAGAAGATTGTGCATAGAGACGTGAAAACGGAGAACATGCTTTTAGATAAGTCACGCACCTTAAAGATTGCAGATTTTGGTGTGGCTCGTCTAGAGGCTTCAAACCCTAACGACATGACCGGTGAGACCGGAACCTTGGGCTATATGGCTCCTGAGGTGCTAAACGGGAGTCCCTACAACAGAAAGTGCGATGTGTATAGCTTTGGGATATGTCTTTGGGAGATTTACTGTTGCGACATGCCTTATCCTGACCTCAGCTTCTCCGAAGTAACCTCCGCCGTCGTCCGCCAGAATTTGAGACCAGAGATACCTAGATGTTGTCCAAGCTCGCTGGCGAACGTGATGAAGAGGTGTTGGGATGCGAATCCGGAGAAGCGGCCGGAGATGGAGGAAGTTGTGGCTATGTTGGAGGCTATTGATACTTCCAAAGGCGGAGGAATGATTCCTCCTGACCAACAACAAGGCTGTTTCTGTTTCCGCCGACACCGAGGCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

411

Amino Acids

46.05

Weight (kDa)

8.19

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	110 - 341	5.2e-48	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	111 - 343	4.6e-45	Protein kinase domain
Kinase-like	PF14531	219 - 328	6.2e-06	Kinase-like
Pkinase_fungal	PF17667	239 - 314	1e-05	Fungal protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01490 AT3G01490
fragaria_vesca	FvH4_6g50600 FvH4_6g50600
malus_domestica	MD09G1034900.v1.1
prunus_persica	Prupe.3G283600_v2.0.a1 Prupe.3G283600_v2.0.a1
pyrus_communis	pycom111g02780
rosa_chinensis	RchiOBHm_Chr2g0171391
rosa_laevigata	RLG00000022009
rosa_multiflora	Rmu_sc0007646.1_g000009
rosa_roxburghii	Rroxscaffold_2G00080700
rosa_rugosa	Rorug02G0553600 Rorug02G0553700
rosa_samantha	Rh2AG628100 Rh2BG638500 Rh2DG649500 Rh2DG655600
rosa_wichuraiana	Rw2G052020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	326
AccBSI	CCGCTC	1 cut(s)	533
AccI	GTMKAC	1 cut(s)	272
AccII	CGCG	1 cut(s)	717
AccIII	TCCGGA	1 cut(s)	1105
AclI	AACGTT	1 cut(s)	597
AclWI	GGATC	1 cut(s)	305
AcoI	YGGCCR	1 cut(s)	1115
AcsI	RAATTY	1 cut(s)	1030
AfaI	GTAC	2 cut(s)	352, 361
AfiI	CCNNNNNNNGG	1 cut(s)	218
AflII	CTTAAG	1 cut(s)	94
AgeI	ACCGGT	1 cut(s)	857
AgsI	TTSAA	2 cut(s)	682, 840
AjiI	CACGTC	1 cut(s)	760
AluBI	AGCT	8 cut(s)	196, 322, 452, 464, 499, 939, 996, 1065
AluI	AGCT	8 cut(s)	196, 322, 452, 464, 499, 939, 996, 1065
Alw26I	GTCTC	4 cut(s)	82, 750, 857, 1030
AlwI	GGATC	1 cut(s)	305
Aor13HI	TCCGGA	1 cut(s)	1105
AoxI	GGCC	3 cut(s)	209, 1115, 1228
ApeKI	GCWGC	2 cut(s)	249, 464
ApoI	RAATTY	1 cut(s)	1030
AsiGI	ACCGGT	1 cut(s)	857
Asp700I	GAANNNNTTC	1 cut(s)	179
AspLEI	GCGC	1 cut(s)	635
AspS9I	GGNCC	1 cut(s)	1229
AsuC2I	CCSGG	1 cut(s)	627
AsuHPI	GGTGA	4 cut(s)	152, 359, 508, 872
AxyI	CCTNAGG	1 cut(s)	891
BaeGI	GKGCMC	1 cut(s)	432
BbvCI	CCTCAGC	1 cut(s)	992
BbvI	GCAGC	2 cut(s)	261, 451
BccI	CCATC	6 cut(s)	106, 131, 377, 513, 532, 1117
BceAI	ACGGC	2 cut(s)	383, 1001
BciVI	GTATCC	1 cut(s)	29
BcnI	CCSGG	1 cut(s)	627
BcoDI	GTCTC	4 cut(s)	82, 750, 857, 1030
BfaI	CTAG	4 cut(s)	345, 410, 830, 1050
BfoI	RGCGCY	1 cut(s)	636
BfrI	CTTAAG	1 cut(s)	94
BfuI	GTATCC	1 cut(s)	29
BglI	GCCNNNNNGGC	1 cut(s)	630
BisI	GCNGC	8 cut(s)	212, 250, 465, 534, 631, 664, 667, 1115
BlsI	GCNGC	8 cut(s)	213, 251, 466, 535, 632, 665, 668, 1116
Bme1390I	CCNGG	1 cut(s)	627
BmgBI	CACGTC	1 cut(s)	760
BmgT120I	GGNCC	1 cut(s)	1229
BmiI	GGNNCC	2 cut(s)	871, 888
BmrFI	CCNGG	1 cut(s)	627
BmrI	ACTGGG	1 cut(s)	424
BmsI	GCATC	1 cut(s)	1087
BmuI	ACTGGG	1 cut(s)	424
Bpu10I	CCTNAGC	1 cut(s)	992
BpuEI	CTTGAG	2 cut(s)	459, 623
BpuMI	CCSGG	1 cut(s)	627
BsaAI	YACGTR	1 cut(s)	40
BsaBI	GATNNNNATC	1 cut(s)	1101
BsaI	GGTCTC	2 cut(s)	857, 1030
BsaJI	CCNNGG	5 cut(s)	276, 370, 625, 873, 1225
BsaWI	WCCGGW	3 cut(s)	857, 866, 1105
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
Bse118I	RCCGGY	1 cut(s)	857
Bse1I	ACTGG	1 cut(s)	419
Bse21I	CCTNAGG	1 cut(s)	891
Bse8I	GATNNNNATC	1 cut(s)	1101
BseAI	TCCGGA	1 cut(s)	1105
BseDI	CCNNGG	5 cut(s)	276, 370, 625, 873, 1225
BseGI	GGATG	2 cut(s)	505, 1102
BseJI	GATNNNNATC	1 cut(s)	1101
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseMII	CTCAG	3 cut(s)	752, 882, 1006
BseNI	ACTGG	1 cut(s)	419
BseRI	GAGGAG	2 cut(s)	42, 307
BseSI	GKGCMC	1 cut(s)	432
BseX3I	CGGCCG	1 cut(s)	1115
BseXI	GCAGC	2 cut(s)	261, 451
Bsh1236I	CGCG	1 cut(s)	717
Bsh1285I	CGRYCG	2 cut(s)	276, 1118
BshFI	GGCC	3 cut(s)	211, 1117, 1230
BshTI	ACCGGT	1 cut(s)	857
BsiEI	CGRYCG	2 cut(s)	276, 1118
BsiSI	CCGG	5 cut(s)	627, 858, 867, 1106, 1118
BslFI	GGGAC	2 cut(s)	556, 894
BslI	CCNNNNNNNGG	1 cut(s)	218
BsmAI	GTCTC	4 cut(s)	82, 750, 857, 1030
BsmBI	CGTCTC	1 cut(s)	750
BsmFI	GGGAC	2 cut(s)	556, 894
BsmI	GAATGC	1 cut(s)	591
BsnI	GGCC	3 cut(s)	211, 1117, 1230
Bso31I	GGTCTC	2 cut(s)	857, 1030
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp13I	TCCGGA	1 cut(s)	1105
Bsp143I	GATC	3 cut(s)	49, 310, 706
BspANI	GGCC	3 cut(s)	211, 1117, 1230
BspCNI	CTCAG	3 cut(s)	751, 883, 1005
BspEI	TCCGGA	1 cut(s)	1105
BspFNI	CGCG	1 cut(s)	717
BspLI	GGNNCC	2 cut(s)	871, 888
BspPI	GGATC	1 cut(s)	305
BspTI	CTTAAG	1 cut(s)	94
BspTNI	GGTCTC	2 cut(s)	857, 1030
BsrBI	CCGCTC	1 cut(s)	533
BsrFI	RCCGGY	1 cut(s)	857
BsrI	ACTGG	1 cut(s)	419
BssAI	RCCGGY	1 cut(s)	857
BssECI	CCNNGG	5 cut(s)	276, 370, 625, 873, 1225
BssMI	GATC	3 cut(s)	49, 310, 706
BssT1I	CCWWGG	1 cut(s)	873
Bst4CI	ACNGT	3 cut(s)	364, 371, 968
Bst6I	CTCTTC	4 cut(s)	113, 119, 417, 1079
BstAFI	CTTAAG	1 cut(s)	94
BstBAI	YACGTR	1 cut(s)	40
BstC8I	GCNNGC	3 cut(s)	715, 1067, 1071
BstDEI	CTNAG	5 cut(s)	318, 458, 738, 891, 992
BstDSI	CCRYGG	1 cut(s)	370
BstF5I	GGATG	2 cut(s)	505, 1102
BstFNI	CGCG	1 cut(s)	717
BstH2I	RGCGCY	1 cut(s)	636
BstHHI	GCGC	1 cut(s)	635
BstKTI	GATC	3 cut(s)	52, 313, 709
BstMAI	GTCTC	4 cut(s)	82, 750, 857, 1030
BstMBI	GATC	3 cut(s)	49, 310, 706
BstMCI	CGRYCG	2 cut(s)	276, 1118
BstMWI	GCNNNNNNNGC	2 cut(s)	449, 630
BstNSI	RCATGY	2 cut(s)	778, 979
BstSCI	CCNGG	1 cut(s)	625
BstSLI	GKGCMC	1 cut(s)	432
BstUI	CGCG	1 cut(s)	717
BstV1I	GCAGC	2 cut(s)	261, 451
BstZI	CGGCCG	1 cut(s)	1115
Bsu36I	CCTNAGG	1 cut(s)	891
BsuI	GTATCC	1 cut(s)	29
BsuRI	GGCC	3 cut(s)	211, 1117, 1230
BtgI	CCRYGG	1 cut(s)	370
BtgZI	GCGATG	2 cut(s)	551, 942
BtrI	CACGTC	1 cut(s)	760
BtsCI	GGATG	2 cut(s)	505, 1102
Cac8I	GCNNGC	3 cut(s)	715, 1067, 1071
CfoI	GCGC	1 cut(s)	635
Cfr10I	RCCGGY	1 cut(s)	857
Cfr13I	GGNCC	1 cut(s)	1229
CseI	GACGC	1 cut(s)	449
Csp6I	GTAC	2 cut(s)	351, 360
CspAI	ACCGGT	1 cut(s)	857
CviAII	CATG	5 cut(s)	105, 775, 853, 976, 1233
CviQI	GTAC	2 cut(s)	351, 360
DdeI	CTNAG	5 cut(s)	318, 458, 738, 891, 992
DpnI	GATC	3 cut(s)	51, 312, 708
DpnII	GATC	3 cut(s)	49, 310, 706
DraI	TTTAAA	1 cut(s)	63
EaeI	YGGCCR	1 cut(s)	1115
EagI	CGGCCG	1 cut(s)	1115
Eam1104I	CTCTTC	4 cut(s)	113, 119, 417, 1079
EarI	CTCTTC	4 cut(s)	113, 119, 417, 1079
EciI	GGCGGA	5 cut(s)	29, 1003, 1013, 1185, 1205
EclXI	CGGCCG	1 cut(s)	1115
Eco130I	CCWWGG	1 cut(s)	873
Eco31I	GGTCTC	2 cut(s)	857, 1030
Eco52I	CGGCCG	1 cut(s)	1115
Eco81I	CCTNAGG	1 cut(s)	891
EcoT14I	CCWWGG	1 cut(s)	873
ErhI	CCWWGG	1 cut(s)	873
Esp3I	CGTCTC	1 cut(s)	750
FaeI	CATG	5 cut(s)	108, 778, 856, 979, 1236
FaqI	GGGAC	2 cut(s)	556, 894
FatI	CATG	5 cut(s)	104, 774, 852, 975, 1232
FauI	CCCGC	1 cut(s)	710
FblI	GTMKAC	1 cut(s)	272
Fnu4HI	GCNGC	8 cut(s)	212, 250, 465, 534, 631, 664, 667, 1115
FokI	GGATG	2 cut(s)	492, 1109
Fsp4HI	GCNGC	8 cut(s)	212, 250, 465, 534, 631, 664, 667, 1115
FspBI	CTAG	4 cut(s)	345, 410, 830, 1050
GlaI	GCGC	1 cut(s)	634
GluI	GCNGC	8 cut(s)	212, 250, 465, 534, 631, 664, 667, 1115
HaeII	RGCGCY	1 cut(s)	636
HaeIII	GGCC	3 cut(s)	211, 1117, 1230
HapII	CCGG	5 cut(s)	627, 858, 867, 1106, 1118
HgaI	GACGC	1 cut(s)	449
HhaI	GCGC	1 cut(s)	635
Hin1II	CATG	5 cut(s)	108, 778, 856, 979, 1236
Hin6I	GCGC	1 cut(s)	633
HinP1I	GCGC	1 cut(s)	633
HincII	GTYRAC	1 cut(s)	273
HindII	GTYRAC	1 cut(s)	273
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	5 cut(s)	67, 375, 907, 1102, 1180
HpaII	CCGG	5 cut(s)	627, 858, 867, 1106, 1118
HphI	GGTGA	4 cut(s)	152, 359, 508, 872
Hpy166II	GTNNAC	2 cut(s)	273, 367
Hpy188I	TCNGA	7 cut(s)	54, 185, 207, 439, 550, 741, 1003
Hpy188III	TCNNGA	8 cut(s)	71, 389, 476, 830, 890, 986, 1106, 1187
Hpy8I	GTNNAC	2 cut(s)	273, 367
Hpy99I	CGWCG	1 cut(s)	1022
HpyAV	CCTTC	3 cut(s)	4, 324, 688
HpyCH4III	ACNGT	3 cut(s)	364, 371, 968
HpyCH4IV	ACGT	5 cut(s)	39, 150, 597, 759, 1077
HpyCH4V	TGCA	4 cut(s)	85, 733, 751, 809
HpyF10VI	GCNNNNNNNGC	2 cut(s)	449, 630
HpyF3I	CTNAG	5 cut(s)	318, 458, 738, 891, 992
HpySE526I	ACGT	5 cut(s)	39, 150, 597, 759, 1077
Hsp92II	CATG	5 cut(s)	108, 778, 856, 979, 1236
HspAI	GCGC	1 cut(s)	633
Kpn2I	TCCGGA	1 cut(s)	1105
Kzo9I	GATC	3 cut(s)	49, 310, 706
LmnI	GCTCC	2 cut(s)	530, 892
Lsp1109I	GCAGC	2 cut(s)	261, 451
LweI	GCATC	1 cut(s)	1087
MaeI	CTAG	4 cut(s)	345, 410, 830, 1050
MaeII	ACGT	5 cut(s)	39, 150, 597, 759, 1077
MaeIII	GTNAC	5 cut(s)	514, 593, 725, 789, 1006
MalI	GATC	3 cut(s)	51, 312, 708
MbiI	CCGCTC	1 cut(s)	533
MboI	GATC	3 cut(s)	49, 310, 706
MboII	GAAGA	6 cut(s)	130, 136, 155, 434, 754, 1096
MfeI	CAATTG	1 cut(s)	80
MhlI	GDGCHC	1 cut(s)	432
MluCI	AATT	3 cut(s)	80, 264, 1030
MlyI	GAGTC	2 cut(s)	76, 916
MmeI	TCCRAC	2 cut(s)	718, 1125
MroI	TCCGGA	1 cut(s)	1105
MroXI	GAANNNNTTC	1 cut(s)	179
MseI	TTAA	3 cut(s)	62, 95, 800
MslI	CAYNNNNRTG	1 cut(s)	510
MspCI	CTTAAG	1 cut(s)	94
MspI	CCGG	5 cut(s)	627, 858, 867, 1106, 1118
MspR9I	CCNGG	1 cut(s)	627
MunI	CAATTG	1 cut(s)	80
Mva1269I	GAATGC	1 cut(s)	591
MvnI	CGCG	1 cut(s)	717
MwoI	GCNNNNNNNGC	2 cut(s)	449, 630
NciI	CCSGG	1 cut(s)	627
NdeII	GATC	3 cut(s)	49, 310, 706
NlaIII	CATG	5 cut(s)	108, 778, 856, 979, 1236
NlaIV	GGNNCC	2 cut(s)	871, 888
NmeAIII	GCCGAG	1 cut(s)	615
NmuCI	GTSAC	2 cut(s)	514, 789
NspI	RCATGY	2 cut(s)	778, 979
PctI	GAATGC	1 cut(s)	591
PdmI	GAANNNNTTC	1 cut(s)	179
PfeI	GAWTC	3 cut(s)	375, 1102, 1180
PinAI	ACCGGT	1 cut(s)	857
PkrI	GCNGC	8 cut(s)	213, 251, 466, 535, 632, 665, 668, 1116
PleI	GAGTC	2 cut(s)	75, 915
PpsI	GAGTC	2 cut(s)	75, 915
Ppu21I	YACGTR	1 cut(s)	40
PsiI	TTATAA	1 cut(s)	326
Psp1406I	AACGTT	1 cut(s)	597
PspN4I	GGNNCC	2 cut(s)	871, 888
PspPI	GGNCC	1 cut(s)	1229
RsaI	GTAC	2 cut(s)	352, 361
RsaNI	GTAC	2 cut(s)	351, 360
RseI	CAYNNNNRTG	1 cut(s)	510
SalI	GTCGAC	1 cut(s)	271
SaqAI	TTAA	3 cut(s)	62, 95, 800
SatI	GCNGC	8 cut(s)	212, 250, 465, 534, 631, 664, 667, 1115
Sau3AI	GATC	3 cut(s)	49, 310, 706
Sau96I	GGNCC	1 cut(s)	1229
SchI	GAGTC	2 cut(s)	76, 916
ScrFI	CCNGG	1 cut(s)	627
SduI	GDGCHC	1 cut(s)	432
SfaNI	GCATC	1 cut(s)	1087
SmiMI	CAYNNNNRTG	1 cut(s)	510
SmlI	CTYRAG	3 cut(s)	94, 474, 638
SmoI	CTYRAG	3 cut(s)	94, 474, 638
Sse9I	AATT	3 cut(s)	80, 264, 1030
SspMI	CTAG	4 cut(s)	345, 410, 830, 1050
StyD4I	CCNGG	1 cut(s)	625
StyI	CCWWGG	1 cut(s)	873
TaaI	ACNGT	3 cut(s)	364, 371, 968
TaiI	ACGT	5 cut(s)	42, 153, 600, 762, 1080
TaqI	TCGA	4 cut(s)	190, 272, 290, 501
TaqII	GACCGA	1 cut(s)	290
TasI	AATT	3 cut(s)	80, 264, 1030
TauI	GCSGC	6 cut(s)	214, 536, 633, 666, 669, 1117
TfiI	GAWTC	3 cut(s)	375, 1102, 1180
Tru1I	TTAA	3 cut(s)	62, 95, 800
Tru9I	TTAA	3 cut(s)	62, 95, 800
TseFI	GTSAC	2 cut(s)	514, 789
TseI	GCWGC	2 cut(s)	249, 464
Tsp45I	GTSAC	2 cut(s)	514, 789
TspDTI	ATGAA	3 cut(s)	17, 514, 1097
TspGWI	ACGGA	2 cut(s)	581, 782
Vha464I	CTTAAG	1 cut(s)	94
XapI	RAATTY	1 cut(s)	1030
XbaI	TCTAGA	1 cut(s)	829
XceI	RCATGY	2 cut(s)	778, 979
XmiI	GTMKAC	1 cut(s)	272
XmnI	GAANNNNTTC	1 cut(s)	179
XspI	CTAG	4 cut(s)	345, 410, 830, 1050

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.