Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0011710

Physical Location & Seq

Genomic Coordinates Reverse (-)

87607773 .. 87612028

Gene Structure 4256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG649500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGCTGTATTCCAAAATCTCAGTTAAACTTCTAGATTGGGGAGAAGAGGGCCATAGAACTGACGCTGAAATAGCTTCTCTAAGAGCAGCTTTTACTCAAGAAGTTGCTGTGTGGCATAAGCTTGACCATCCTAATGTAACCAAGTTTATAGGGGCGACAATGGGAACATCAGAGCTGAACATACAAACAGATAATGGCCAGGTTGGCATGCCAAGTAATGTTTGTTGCGTTGTTGTCGAGTATTGTCCTGGTGGTGCACTGAAATCTTACCTCATAAAGAACCGCAGAAAGAAGCTGGCTTTCAAAGTAGTTGTCCAATTGGCACTAGATCTTGCACGAGGTTTATGCTATCTCCATTCACAGAAGATTGTTCACAGAGATGTTAAAACAGAAAACATGCTTCTGGACAAGACACGTACTGTAAAAATAGCTGACTTTGGGGTTGCTCGTGTGGAGGCCTCAAATCCTCATGACATGACAGGGGAGACTGGAACCCTTGGTTACATGGCTCCAGAGGTTCTCAACGGCAATCCATATAACAGGAAATGTGATGTGTACAGTTTTGGCATATGCTTGTGGGAAATATACTGCTGTGACATGCCGTATCCTGATCTTAGTTTCTCAGAGGTGACATCAGCTGTTGTCCGTCAGAATCTGAGGCCCGAGATACCTCGTTGTTGCCCAAGTTCTCTTGCAAATGTTATGAAGCGATGTTGGGATGCTAACCCCGATAAGCGGCCCGAGATGGATGAGGTGGTGGCCATGTTGGAGGCTGTCGACACAACTAAAGGCGGAGGTATGCTCCCTCATGATCATCCTCAGGGTTGTCTCTGCTTCCGTAGGTATCGAGGACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

285

Amino Acids

31.86

Weight (kDa)

7.51

Isoelectric Point (pI)

31.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	28 - 256	5.4e-57	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	29 - 254	4e-46	Protein kinase domain
Kinase-like	PF14531	93 - 202	2.5e-06	Kinase-like
Pkinase_fungal	PF17667	114 - 188	7.3e-06	Fungal protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01490 AT3G01490
fragaria_vesca	FvH4_6g50600 FvH4_6g50600
malus_domestica	MD09G1034900.v1.1
prunus_persica	Prupe.3G283600_v2.0.a1 Prupe.3G283600_v2.0.a1
pyrus_communis	pycom111g02780
rosa_chinensis	RchiOBHm_Chr2g0171391
rosa_laevigata	RLG00000022009
rosa_multiflora	Rmu_sc0007646.1_g000009
rosa_roxburghii	Rroxscaffold_2G00080700
rosa_rugosa	Rorug02G0553600 Rorug02G0553700
rosa_samantha	Rh2AG628100 Rh2BG638500 Rh2DG649500 Rh2DG655600
rosa_wichuraiana	Rw2G052020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	777
AciI	CCGC	3 cut(s)	283, 736, 792
AcoI	YGGCCR	2 cut(s)	196, 759
AfaI	GTAC	2 cut(s)	418, 557
AfiI	CCNNNNNNNGG	1 cut(s)	735
AflIII	ACRYGT	1 cut(s)	413
AgsI	TTSAA	1 cut(s)	304
AjnI	CCWGG	2 cut(s)	198, 247
AluBI	AGCT	7 cut(s)	74, 89, 121, 175, 295, 431, 638
AluI	AGCT	7 cut(s)	74, 89, 121, 175, 295, 431, 638
Alw21I	GWGCWC	1 cut(s)	259
Alw26I	GTCTC	2 cut(s)	479, 833
Alw44I	GTGCAC	1 cut(s)	255
AlwNI	CAGNNNCTG	1 cut(s)	655
Ama87I	CYCGRG	2 cut(s)	662, 740
AoxI	GGCC	6 cut(s)	49, 196, 456, 659, 737, 759
ApaLI	GTGCAC	1 cut(s)	255
ApeKI	GCWGC	1 cut(s)	86
ArsI	GACNNNNNNTTYG	2 cut(s)	297, 329
AspS9I	GGNCC	4 cut(s)	49, 660, 738, 851
AsuHPI	GGTGA	1 cut(s)	640
AvaI	CYCGRG	2 cut(s)	662, 740
AvaII	GGWCC	1 cut(s)	851
AxyI	CCTNAGG	1 cut(s)	819
BaeGI	GKGCMC	1 cut(s)	259
BalI	TGGCCA	2 cut(s)	198, 761
BauI	CACGAG	2 cut(s)	336, 447
Bbv12I	GWGCWC	1 cut(s)	259
BbvI	GCAGC	1 cut(s)	98
BccI	CCATC	2 cut(s)	135, 739
BceAI	ACGGC	2 cut(s)	541, 586
BcgI	CGANNNNNNTGC	2 cut(s)	327, 361
BciT130I	CCWGG	2 cut(s)	200, 249
BciVI	GTATCC	1 cut(s)	615
BclI	TGATCA	1 cut(s)	811
BcoDI	GTCTC	2 cut(s)	479, 833
BfaI	CTAG	2 cut(s)	32, 326
BfuI	GTATCC	1 cut(s)	615
BglI	GCCNNNNNGGC	1 cut(s)	204
BglII	AGATCT	1 cut(s)	328
BisI	GCNGC	2 cut(s)	87, 737
BlsI	GCNGC	2 cut(s)	88, 738
Bme1390I	CCNGG	2 cut(s)	200, 249
Bme18I	GGWCC	1 cut(s)	851
BmeT110I	CYCGRG	2 cut(s)	662, 740
BmgT120I	GGNCC	4 cut(s)	49, 660, 738, 851
BmiI	GGNNCC	2 cut(s)	493, 510
BmrFI	CCNGG	2 cut(s)	200, 249
BmsI	GCATC	1 cut(s)	709
BplI	GAGNNNNNCTC	2 cut(s)	786, 818
BpmI	CTGGAG	1 cut(s)	495
BpuEI	CTTGAG	1 cut(s)	81
BsaAI	YACGTR	1 cut(s)	416
BsaJI	CCNNGG	1 cut(s)	496
Bsc4I	CCNNNNNNNGG	1 cut(s)	735
Bse1I	ACTGG	1 cut(s)	493
Bse21I	CCTNAGG	1 cut(s)	819
BseBI	CCWGG	2 cut(s)	200, 249
BseDI	CCNNGG	1 cut(s)	496
BseGI	GGATG	4 cut(s)	127, 724, 754, 814
BseLI	CCNNNNNNNGG	1 cut(s)	735
BseMII	CTCAG	4 cut(s)	33, 636, 647, 833
BseNI	ACTGG	1 cut(s)	493
BseSI	GKGCMC	1 cut(s)	259
BseXI	GCAGC	1 cut(s)	98
BshFI	GGCC	6 cut(s)	51, 198, 458, 661, 739, 761
BsiHKAI	GWGCWC	1 cut(s)	259
BsiHKCI	CYCGRG	2 cut(s)	662, 740
BslI	CCNNNNNNNGG	1 cut(s)	735
BsmAI	GTCTC	2 cut(s)	479, 833
BsnI	GGCC	6 cut(s)	51, 198, 458, 661, 739, 761
BsoBI	CYCGRG	2 cut(s)	662, 740
Bsp1286I	GDGCHC	1 cut(s)	259
Bsp1407I	TGTACA	1 cut(s)	555
Bsp143I	GATC	3 cut(s)	328, 610, 811
BspACI	CCGC	3 cut(s)	283, 736, 792
BspANI	GGCC	6 cut(s)	51, 198, 458, 661, 739, 761
BspCNI	CTCAG	4 cut(s)	32, 635, 648, 832
BspHI	TCATGA	2 cut(s)	469, 808
BspLI	GGNNCC	2 cut(s)	493, 510
BsrGI	TGTACA	1 cut(s)	555
BsrI	ACTGG	1 cut(s)	493
BssECI	CCNNGG	1 cut(s)	496
BssMI	GATC	3 cut(s)	328, 610, 811
BssSI	CACGAG	2 cut(s)	336, 447
BssT1I	CCWWGG	1 cut(s)	496
Bst2BI	CACGAG	2 cut(s)	336, 447
Bst2UI	CCWGG	2 cut(s)	200, 249
Bst4CI	ACNGT	2 cut(s)	421, 560
Bst6I	CTCTTC	1 cut(s)	39
BstAUI	TGTACA	1 cut(s)	555
BstBAI	YACGTR	1 cut(s)	416
BstC8I	GCNNGC	2 cut(s)	209, 297
BstDEI	CTNAG	6 cut(s)	19, 80, 614, 622, 656, 819
BstF5I	GGATG	4 cut(s)	127, 724, 754, 814
BstKTI	GATC	3 cut(s)	331, 613, 814
BstMAI	GTCTC	2 cut(s)	479, 833
BstMBI	GATC	3 cut(s)	328, 610, 811
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 204
BstNI	CCWGG	2 cut(s)	200, 249
BstNSI	RCATGY	3 cut(s)	211, 400, 601
BstSCI	CCNGG	2 cut(s)	198, 247
BstSLI	GKGCMC	1 cut(s)	259
BstV1I	GCAGC	1 cut(s)	98
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
Bsu36I	CCTNAGG	1 cut(s)	819
BsuI	GTATCC	1 cut(s)	615
BsuRI	GGCC	6 cut(s)	51, 198, 458, 661, 739, 761
BtgZI	GCGATG	1 cut(s)	724
BtsCI	GGATG	4 cut(s)	127, 724, 754, 814
BtsIMutI	CAGTG	1 cut(s)	257
Cac8I	GCNNGC	2 cut(s)	209, 297
CaiI	CAGNNNCTG	1 cut(s)	655
CciI	TCATGA	2 cut(s)	469, 808
Cfr13I	GGNCC	4 cut(s)	49, 660, 738, 851
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	2 cut(s)	417, 556
CviAII	CATG	8 cut(s)	208, 397, 470, 475, 505, 598, 763, 809
CviQI	GTAC	2 cut(s)	417, 556
DdeI	CTNAG	6 cut(s)	19, 80, 614, 622, 656, 819
DpnI	GATC	3 cut(s)	330, 612, 813
DpnII	GATC	3 cut(s)	328, 610, 811
EaeI	YGGCCR	2 cut(s)	196, 759
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
EciI	GGCGGA	1 cut(s)	807
Eco130I	CCWWGG	1 cut(s)	496
Eco147I	AGGCCT	1 cut(s)	458
Eco47I	GGWCC	1 cut(s)	851
Eco81I	CCTNAGG	1 cut(s)	819
Eco88I	CYCGRG	2 cut(s)	662, 740
EcoO109I	RGGNCCY	1 cut(s)	851
EcoRII	CCWGG	2 cut(s)	198, 247
EcoT14I	CCWWGG	1 cut(s)	496
ErhI	CCWWGG	1 cut(s)	496
FaeI	CATG	8 cut(s)	211, 400, 473, 478, 508, 601, 766, 812
FalI	AAGNNNNNCTT	2 cut(s)	73, 105
FatI	CATG	8 cut(s)	207, 396, 469, 474, 504, 597, 762, 808
FauNDI	CATATG	1 cut(s)	569
FbaI	TGATCA	1 cut(s)	811
FblI	GTMKAC	1 cut(s)	777
Fnu4HI	GCNGC	2 cut(s)	87, 737
FokI	GGATG	4 cut(s)	114, 731, 761, 801
Fsp4HI	GCNGC	2 cut(s)	87, 737
FspBI	CTAG	2 cut(s)	32, 326
GluI	GCNGC	2 cut(s)	87, 737
GsuI	CTGGAG	1 cut(s)	495
HaeIII	GGCC	6 cut(s)	51, 198, 458, 661, 739, 761
HgaI	GACGC	1 cut(s)	71
Hin1II	CATG	8 cut(s)	211, 400, 473, 478, 508, 601, 766, 812
HincII	GTYRAC	1 cut(s)	778
HindII	GTYRAC	1 cut(s)	778
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	1 cut(s)	652
HphI	GGTGA	1 cut(s)	640
Hpy166II	GTNNAC	4 cut(s)	257, 373, 556, 778
Hpy188I	TCNGA	4 cut(s)	172, 625, 651, 657
Hpy188III	TCNNGA	7 cut(s)	32, 98, 404, 470, 512, 608, 809
Hpy8I	GTNNAC	4 cut(s)	257, 373, 556, 778
HpyCH4III	ACNGT	2 cut(s)	421, 560
HpyCH4IV	ACGT	1 cut(s)	415
HpyCH4V	TGCA	3 cut(s)	257, 335, 695
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 204
HpyF3I	CTNAG	6 cut(s)	19, 80, 614, 622, 656, 819
HpySE526I	ACGT	1 cut(s)	415
Hsp92II	CATG	8 cut(s)	211, 400, 473, 478, 508, 601, 766, 812
Ksp22I	TGATCA	1 cut(s)	811
Kzo9I	GATC	3 cut(s)	328, 610, 811
LmnI	GCTCC	2 cut(s)	514, 807
Lsp1109I	GCAGC	1 cut(s)	98
LweI	GCATC	1 cut(s)	709
MaeI	CTAG	2 cut(s)	32, 326
MaeII	ACGT	1 cut(s)	415
MaeIII	GTNAC	4 cut(s)	136, 500, 593, 628
MalI	GATC	3 cut(s)	330, 612, 813
MboI	GATC	3 cut(s)	328, 610, 811
MboII	GAAGA	2 cut(s)	56, 376
MfeI	CAATTG	1 cut(s)	317
MflI	RGATCY	1 cut(s)	328
MhlI	GDGCHC	1 cut(s)	259
MlsI	TGGCCA	2 cut(s)	198, 761
MluCI	AATT	1 cut(s)	317
MluNI	TGGCCA	2 cut(s)	198, 761
MmeI	TCCRAC	1 cut(s)	747
Mox20I	TGGCCA	2 cut(s)	198, 761
MscI	TGGCCA	2 cut(s)	198, 761
MseI	TTAA	2 cut(s)	24, 384
MslI	CAYNNNNRTG	2 cut(s)	132, 378
Msp20I	TGGCCA	2 cut(s)	198, 761
MspA1I	CMGCKG	1 cut(s)	638
MspR9I	CCNGG	2 cut(s)	200, 249
MunI	CAATTG	1 cut(s)	317
MvaI	CCWGG	2 cut(s)	200, 249
MwoI	GCNNNNNNNGC	2 cut(s)	71, 204
NdeI	CATATG	1 cut(s)	569
NdeII	GATC	3 cut(s)	328, 610, 811
NlaIII	CATG	8 cut(s)	211, 400, 473, 478, 508, 601, 766, 812
NlaIV	GGNNCC	2 cut(s)	493, 510
NmuCI	GTSAC	2 cut(s)	593, 628
NspI	RCATGY	3 cut(s)	211, 400, 601
PaeI	GCATGC	1 cut(s)	211
PagI	TCATGA	2 cut(s)	469, 808
PceI	AGGCCT	1 cut(s)	458
PfeI	GAWTC	1 cut(s)	652
PkrI	GCNGC	2 cut(s)	88, 738
Ppu21I	YACGTR	1 cut(s)	416
PpuMI	RGGWCCY	1 cut(s)	851
Psp5II	RGGWCCY	1 cut(s)	851
Psp6I	CCWGG	2 cut(s)	198, 247
PspGI	CCWGG	2 cut(s)	198, 247
PspN4I	GGNNCC	2 cut(s)	493, 510
PspPI	GGNCC	4 cut(s)	49, 660, 738, 851
PspPPI	RGGWCCY	1 cut(s)	851
PstNI	CAGNNNCTG	1 cut(s)	655
PsuI	RGATCY	1 cut(s)	328
PvuII	CAGCTG	1 cut(s)	638
RsaI	GTAC	2 cut(s)	418, 557
RsaNI	GTAC	2 cut(s)	417, 556
RseI	CAYNNNNRTG	2 cut(s)	132, 378
SalI	GTCGAC	1 cut(s)	776
SaqAI	TTAA	2 cut(s)	24, 384
SatI	GCNGC	2 cut(s)	87, 737
Sau3AI	GATC	3 cut(s)	328, 610, 811
Sau96I	GGNCC	4 cut(s)	49, 660, 738, 851
ScrFI	CCNGG	2 cut(s)	200, 249
SduI	GDGCHC	1 cut(s)	259
SfaNI	GCATC	1 cut(s)	709
SinI	GGWCC	1 cut(s)	851
SmiMI	CAYNNNNRTG	2 cut(s)	132, 378
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
SphI	GCATGC	1 cut(s)	211
Sse9I	AATT	1 cut(s)	317
SseBI	AGGCCT	1 cut(s)	458
SsiI	CCGC	3 cut(s)	283, 736, 792
SspMI	CTAG	2 cut(s)	32, 326
StuI	AGGCCT	1 cut(s)	458
StyD4I	CCNGG	2 cut(s)	198, 247
StyI	CCWWGG	1 cut(s)	496
TaaI	ACNGT	2 cut(s)	421, 560
TaiI	ACGT	1 cut(s)	418
TaqI	TCGA	3 cut(s)	237, 777, 847
TasI	AATT	1 cut(s)	317
TatI	WGTACW	1 cut(s)	555
TauI	GCSGC	1 cut(s)	739
TfiI	GAWTC	1 cut(s)	652
Tru1I	TTAA	2 cut(s)	24, 384
Tru9I	TTAA	2 cut(s)	24, 384
TscAI	CASTG	1 cut(s)	264
TseFI	GTSAC	2 cut(s)	593, 628
TseI	GCWGC	1 cut(s)	86
Tsp45I	GTSAC	2 cut(s)	593, 628
TspDTI	ATGAA	1 cut(s)	719
TspGWI	ACGGA	2 cut(s)	635, 827
TspRI	CASTG	1 cut(s)	264
VneI	GTGCAC	1 cut(s)	255
VpaK11BI	GGWCC	1 cut(s)	851
XbaI	TCTAGA	1 cut(s)	31
XceI	RCATGY	3 cut(s)	211, 400, 601
XmiI	GTMKAC	1 cut(s)	777
XspI	CTAG	2 cut(s)	32, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.