Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0011710

Physical Location & Seq

Genomic Coordinates Reverse (-)

85871557 .. 85875793

Gene Structure 4237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG638500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGAAGGAGAAGAACGACACCGGTGGCGGCGGCGGGTATGTGAGGGCGGACCAGATAGATCTGAAGAGCTTGGACGAGCAGCTTCAGAAGCATCTGAGCAGGGCATGGACTATGGAGAAGAACAAGAACAGAGACCAGCAGGAGCAACAAGAACAAGAACTGGAAGCGGAAGCGGAAGCAGCAGCAGCTAGGGTGGTGGGTCCCACCAGGAGGCAAGAGTGGGAGATTGATCCTTCCAAGCTCATAGTCAAGGGTGCTATTGCCAGAGGCACCTTCGGCACCGTCCACCGTGGCATTTACGACGGCATAGACGTCGCCGTTAAACTTCTAGATTGGGGAGAAGAGGGCCATAGAACTGACGCTGAAATAGCTTCTCTAAGAGCAGCTTTTACTCAAGAAGTTGCTGTGTGGCATAAGCTTGACCATCCTAATGTAACCAAGTTTATAGGGGCGACAATGGGAACATCAGAGCTGAACATACAAACAGATAATGGCCAGGTTGGCATGCCAAGTAATGTTTGTTGCGTTGTTGTCGAGTATTGTCCTGGTGGTGCACTGAAATCTTACCTCATAAAGAACCGCAGAAAGAAGCTGGCTTTCAAAGTAGTTGTCCAATTGGCACTAGATCTTGCACGAGGTTTATGCTATCTCCATTCACAGAAGATTGTTCACAGAGATGTTAAAACAGAAAACATGCTTCTGGACAAGACACGTACTGTAAAAATAGCTGACTTTGGGGTTGCTCGTGTGGAGGCCTCAAATCCTCATGACATGACAGGGGAGACTGGAACCCTTGGTTACATGGCTCCAGAGGTTCTCAACGGCAATCCATATAACAGGAAATGTGATGTGTACAGTTTTGGCATATGCTTGTGGGAAATATACTGCTGTGACATGCCGTATCCTGATCTTAGTTTCTCAGAGGTGACATCAGCTGTTGTCCGTCAGGTAGATATTTTATACTTGTTGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

324

Amino Acids

36.15

Weight (kDa)

5.95

Isoelectric Point (pI)

28.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	84 - 316	5.1e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	85 - 314	8.9e-49	Protein tyrosine and serine/threonine kinase
Kinase-like	PF14531	192 - 301	4e-06	Kinase-like
Pkinase_fungal	PF17667	213 - 287	9.1e-06	Fungal protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01490 AT3G01490
fragaria_vesca	FvH4_6g50600 FvH4_6g50600
malus_domestica	MD09G1034900.v1.1
prunus_persica	Prupe.3G283600_v2.0.a1 Prupe.3G283600_v2.0.a1
pyrus_communis	pycom111g02780
rosa_chinensis	RchiOBHm_Chr2g0171391
rosa_laevigata	RLG00000022009
rosa_multiflora	Rmu_sc0007646.1_g000009
rosa_roxburghii	Rroxscaffold_2G00080700
rosa_rugosa	Rorug02G0553600 Rorug02G0553700
rosa_samantha	Rh2AG628100 Rh2BG638500 Rh2DG649500 Rh2DG655600
rosa_wichuraiana	Rw2G052020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	315
AccB1I	GGYRCC	2 cut(s)	269, 278
AciI	CCGC	7 cut(s)	27, 30, 33, 47, 167, 173, 580
AclWI	GGATC	1 cut(s)	224
AcoI	YGGCCR	1 cut(s)	493
AcuI	CTGAAG	2 cut(s)	68, 83
AcyI	GRCGYC	1 cut(s)	312
AfaI	GTAC	2 cut(s)	715, 854
AfiI	CCNNNNNNNGG	1 cut(s)	210
AflIII	ACRYGT	1 cut(s)	710
AgeI	ACCGGT	1 cut(s)	20
AgsI	TTSAA	2 cut(s)	601, 970
AjnI	CCWGG	3 cut(s)	206, 495, 544
Alw21I	GWGCWC	1 cut(s)	556
Alw26I	GTCTC	2 cut(s)	126, 776
Alw44I	GTGCAC	1 cut(s)	552
AlwI	GGATC	1 cut(s)	224
AoxI	GGCC	3 cut(s)	346, 493, 753
ApaLI	GTGCAC	1 cut(s)	552
ApeKI	GCWGC	5 cut(s)	79, 179, 182, 185, 383
ArsI	GACNNNNNNTTYG	2 cut(s)	594, 626
AsiGI	ACCGGT	1 cut(s)	20
AspS9I	GGNCC	3 cut(s)	49, 200, 346
AsuHPI	GGTGA	1 cut(s)	937
AvaII	GGWCC	2 cut(s)	49, 200
BaeGI	GKGCMC	1 cut(s)	556
BalI	TGGCCA	1 cut(s)	495
BanI	GGYRCC	2 cut(s)	269, 278
BauI	CACGAG	2 cut(s)	633, 744
Bbv12I	GWGCWC	1 cut(s)	556
BbvI	GCAGC	5 cut(s)	91, 191, 194, 197, 395
BccI	CCATC	1 cut(s)	432
BceAI	ACGGC	4 cut(s)	302, 319, 838, 883
BcgI	CGANNNNNNTGC	4 cut(s)	295, 329, 624, 658
BciT130I	CCWGG	3 cut(s)	208, 497, 546
BciVI	GTATCC	1 cut(s)	912
BcoDI	GTCTC	2 cut(s)	126, 776
BfaI	CTAG	3 cut(s)	189, 329, 623
BfuI	GTATCC	1 cut(s)	912
BglI	GCCNNNNNGGC	1 cut(s)	501
BglII	AGATCT	2 cut(s)	58, 625
BisI	GCNGC	7 cut(s)	28, 31, 80, 180, 183, 186, 384
BlsI	GCNGC	7 cut(s)	29, 32, 81, 181, 184, 187, 385
Bme1390I	CCNGG	3 cut(s)	208, 497, 546
Bme18I	GGWCC	2 cut(s)	49, 200
BmgT120I	GGNCC	3 cut(s)	49, 200, 346
BmiI	GGNNCC	6 cut(s)	201, 202, 271, 280, 790, 807
BmrFI	CCNGG	3 cut(s)	208, 497, 546
BmsI	GCATC	1 cut(s)	100
BpmI	CTGGAG	1 cut(s)	792
BpuEI	CTTGAG	1 cut(s)	378
BsaAI	YACGTR	1 cut(s)	713
BsaHI	GRCGYC	1 cut(s)	312
BsaI	GGTCTC	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	289, 793
BsaWI	WCCGGW	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
Bse118I	RCCGGY	1 cut(s)	20
Bse1I	ACTGG	2 cut(s)	165, 790
BseBI	CCWGG	3 cut(s)	208, 497, 546
BseDI	CCNNGG	2 cut(s)	289, 793
BseGI	GGATG	1 cut(s)	424
BseLI	CCNNNNNNNGG	1 cut(s)	210
BseMII	CTCAG	2 cut(s)	86, 933
BseNI	ACTGG	2 cut(s)	165, 790
BseSI	GKGCMC	1 cut(s)	556
BseXI	GCAGC	5 cut(s)	91, 191, 194, 197, 395
BshFI	GGCC	3 cut(s)	348, 495, 755
BshNI	GGYRCC	2 cut(s)	269, 278
BshTI	ACCGGT	1 cut(s)	20
BsiHKAI	GWGCWC	1 cut(s)	556
BsiSI	CCGG	1 cut(s)	21
BslFI	GGGAC	1 cut(s)	186
BslI	CCNNNNNNNGG	1 cut(s)	210
BsmAI	GTCTC	2 cut(s)	126, 776
BsmFI	GGGAC	1 cut(s)	186
BsnI	GGCC	3 cut(s)	348, 495, 755
Bso31I	GGTCTC	1 cut(s)	126
Bsp1286I	GDGCHC	1 cut(s)	556
Bsp1407I	TGTACA	1 cut(s)	852
Bsp143I	GATC	4 cut(s)	58, 229, 625, 907
BspACI	CCGC	7 cut(s)	27, 30, 33, 47, 167, 173, 580
BspANI	GGCC	3 cut(s)	348, 495, 755
BspCNI	CTCAG	2 cut(s)	87, 932
BspHI	TCATGA	1 cut(s)	766
BspLI	GGNNCC	6 cut(s)	201, 202, 271, 280, 790, 807
BspPI	GGATC	1 cut(s)	224
BspQI	GCTCTTC	1 cut(s)	59
BspT107I	GGYRCC	2 cut(s)	269, 278
BspTNI	GGTCTC	1 cut(s)	126
BsrFI	RCCGGY	1 cut(s)	20
BsrGI	TGTACA	1 cut(s)	852
BsrI	ACTGG	2 cut(s)	165, 790
BssAI	RCCGGY	1 cut(s)	20
BssECI	CCNNGG	2 cut(s)	289, 793
BssMI	GATC	4 cut(s)	58, 229, 625, 907
BssNI	GRCGYC	1 cut(s)	312
BssSI	CACGAG	2 cut(s)	633, 744
BssT1I	CCWWGG	1 cut(s)	793
Bst2BI	CACGAG	2 cut(s)	633, 744
Bst2UI	CCWGG	3 cut(s)	208, 497, 546
Bst4CI	ACNGT	4 cut(s)	283, 290, 718, 857
Bst6I	CTCTTC	2 cut(s)	59, 336
BstACI	GRCGYC	1 cut(s)	312
BstAUI	TGTACA	1 cut(s)	852
BstBAI	YACGTR	1 cut(s)	713
BstC8I	GCNNGC	2 cut(s)	506, 594
BstDEI	CTNAG	4 cut(s)	95, 377, 911, 919
BstDSI	CCRYGG	1 cut(s)	289
BstF5I	GGATG	1 cut(s)	424
BstKTI	GATC	4 cut(s)	61, 232, 628, 910
BstMAI	GTCTC	2 cut(s)	126, 776
BstMBI	GATC	4 cut(s)	58, 229, 625, 907
BstMWI	GCNNNNNNNGC	6 cut(s)	88, 179, 185, 276, 368, 501
BstNI	CCWGG	3 cut(s)	208, 497, 546
BstNSI	RCATGY	3 cut(s)	508, 697, 898
BstSCI	CCNGG	3 cut(s)	206, 495, 544
BstSLI	GKGCMC	1 cut(s)	556
BstV1I	GCAGC	5 cut(s)	91, 191, 194, 197, 395
BstX2I	RGATCY	2 cut(s)	58, 625
BstYI	RGATCY	2 cut(s)	58, 625
BsuI	GTATCC	1 cut(s)	912
BsuRI	GGCC	3 cut(s)	348, 495, 755
BtgI	CCRYGG	1 cut(s)	289
BtsCI	GGATG	1 cut(s)	424
BtsIMutI	CAGTG	1 cut(s)	554
Cac8I	GCNNGC	2 cut(s)	506, 594
CciI	TCATGA	1 cut(s)	766
Cfr10I	RCCGGY	1 cut(s)	20
Cfr13I	GGNCC	3 cut(s)	49, 200, 346
CseI	GACGC	1 cut(s)	368
Csp6I	GTAC	2 cut(s)	714, 853
CspAI	ACCGGT	1 cut(s)	20
CviAII	CATG	7 cut(s)	105, 505, 694, 767, 772, 802, 895
CviQI	GTAC	2 cut(s)	714, 853
DdeI	CTNAG	4 cut(s)	95, 377, 911, 919
DpnI	GATC	4 cut(s)	60, 231, 627, 909
DpnII	GATC	4 cut(s)	58, 229, 625, 907
EaeI	YGGCCR	1 cut(s)	493
Eam1104I	CTCTTC	2 cut(s)	59, 336
EarI	CTCTTC	2 cut(s)	59, 336
EciI	GGCGGA	1 cut(s)	62
Eco130I	CCWWGG	1 cut(s)	793
Eco147I	AGGCCT	1 cut(s)	755
Eco31I	GGTCTC	1 cut(s)	126
Eco47I	GGWCC	2 cut(s)	49, 200
Eco57I	CTGAAG	2 cut(s)	68, 83
EcoO109I	RGGNCCY	1 cut(s)	200
EcoRII	CCWGG	3 cut(s)	206, 495, 544
EcoT14I	CCWWGG	1 cut(s)	793
ErhI	CCWWGG	1 cut(s)	793
FaeI	CATG	7 cut(s)	108, 508, 697, 770, 775, 805, 898
FalI	AAGNNNNNCTT	2 cut(s)	370, 402
FaqI	GGGAC	1 cut(s)	186
FatI	CATG	7 cut(s)	104, 504, 693, 766, 771, 801, 894
FauI	CCCGC	1 cut(s)	26
FauNDI	CATATG	1 cut(s)	866
Fnu4HI	GCNGC	7 cut(s)	28, 31, 80, 180, 183, 186, 384
FokI	GGATG	1 cut(s)	411
Fsp4HI	GCNGC	7 cut(s)	28, 31, 80, 180, 183, 186, 384
FspBI	CTAG	3 cut(s)	189, 329, 623
GluI	GCNGC	7 cut(s)	28, 31, 80, 180, 183, 186, 384
GsuI	CTGGAG	1 cut(s)	792
HaeIII	GGCC	3 cut(s)	348, 495, 755
HapII	CCGG	1 cut(s)	21
HgaI	GACGC	1 cut(s)	368
Hin1I	GRCGYC	1 cut(s)	312
Hin1II	CATG	7 cut(s)	108, 508, 697, 770, 775, 805, 898
HindIII	AAGCTT	1 cut(s)	416
HpaII	CCGG	1 cut(s)	21
HphI	GGTGA	1 cut(s)	937
Hpy166II	GTNNAC	4 cut(s)	286, 554, 670, 853
Hpy188I	TCNGA	5 cut(s)	63, 87, 96, 469, 922
Hpy188III	TCNNGA	6 cut(s)	329, 395, 701, 767, 809, 905
Hpy8I	GTNNAC	4 cut(s)	286, 554, 670, 853
Hpy99I	CGWCG	2 cut(s)	305, 317
HpyAV	CCTTC	2 cut(s)	243, 283
HpyCH4III	ACNGT	4 cut(s)	283, 290, 718, 857
HpyCH4IV	ACGT	2 cut(s)	312, 712
HpyCH4V	TGCA	2 cut(s)	554, 632
HpyF10VI	GCNNNNNNNGC	6 cut(s)	88, 179, 185, 276, 368, 501
HpyF3I	CTNAG	4 cut(s)	95, 377, 911, 919
HpySE526I	ACGT	2 cut(s)	312, 712
Hsp92I	GRCGYC	1 cut(s)	312
Hsp92II	CATG	7 cut(s)	108, 508, 697, 770, 775, 805, 898
KflI	GGGWCCC	1 cut(s)	200
Kzo9I	GATC	4 cut(s)	58, 229, 625, 907
LguI	GCTCTTC	1 cut(s)	59
LmnI	GCTCC	2 cut(s)	142, 811
Lsp1109I	GCAGC	5 cut(s)	91, 191, 194, 197, 395
LweI	GCATC	1 cut(s)	100
MaeI	CTAG	3 cut(s)	189, 329, 623
MaeII	ACGT	2 cut(s)	312, 712
MaeIII	GTNAC	4 cut(s)	433, 797, 890, 925
MalI	GATC	4 cut(s)	60, 231, 627, 909
MboI	GATC	4 cut(s)	58, 229, 625, 907
MboII	GAAGA	5 cut(s)	22, 76, 130, 353, 673
MfeI	CAATTG	1 cut(s)	614
MflI	RGATCY	2 cut(s)	58, 625
MhlI	GDGCHC	1 cut(s)	556
MlsI	TGGCCA	1 cut(s)	495
MluCI	AATT	2 cut(s)	614, 970
MluNI	TGGCCA	1 cut(s)	495
Mox20I	TGGCCA	1 cut(s)	495
MscI	TGGCCA	1 cut(s)	495
MseI	TTAA	3 cut(s)	321, 681, 973
MslI	CAYNNNNRTG	2 cut(s)	429, 675
Msp20I	TGGCCA	1 cut(s)	495
MspA1I	CMGCKG	1 cut(s)	935
MspI	CCGG	1 cut(s)	21
MspR9I	CCNGG	3 cut(s)	208, 497, 546
MunI	CAATTG	1 cut(s)	614
MvaI	CCWGG	3 cut(s)	208, 497, 546
MwoI	GCNNNNNNNGC	6 cut(s)	88, 179, 185, 276, 368, 501
NdeI	CATATG	1 cut(s)	866
NdeII	GATC	4 cut(s)	58, 229, 625, 907
NlaIII	CATG	7 cut(s)	108, 508, 697, 770, 775, 805, 898
NlaIV	GGNNCC	6 cut(s)	201, 202, 271, 280, 790, 807
NmuCI	GTSAC	2 cut(s)	890, 925
NspI	RCATGY	3 cut(s)	508, 697, 898
PaeI	GCATGC	1 cut(s)	508
PagI	TCATGA	1 cut(s)	766
PceI	AGGCCT	1 cut(s)	755
PciSI	GCTCTTC	1 cut(s)	59
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PinAI	ACCGGT	1 cut(s)	20
PkrI	GCNGC	7 cut(s)	29, 32, 81, 181, 184, 187, 385
Ppu21I	YACGTR	1 cut(s)	713
PpuMI	RGGWCCY	1 cut(s)	200
Psp5II	RGGWCCY	1 cut(s)	200
Psp6I	CCWGG	3 cut(s)	206, 495, 544
PspGI	CCWGG	3 cut(s)	206, 495, 544
PspN4I	GGNNCC	6 cut(s)	201, 202, 271, 280, 790, 807
PspPI	GGNCC	3 cut(s)	49, 200, 346
PspPPI	RGGWCCY	1 cut(s)	200
PsuI	RGATCY	2 cut(s)	58, 625
PvuII	CAGCTG	1 cut(s)	935
RsaI	GTAC	2 cut(s)	715, 854
RsaNI	GTAC	2 cut(s)	714, 853
RseI	CAYNNNNRTG	2 cut(s)	429, 675
SapI	GCTCTTC	1 cut(s)	59
SaqAI	TTAA	3 cut(s)	321, 681, 973
SatI	GCNGC	7 cut(s)	28, 31, 80, 180, 183, 186, 384
Sau3AI	GATC	4 cut(s)	58, 229, 625, 907
Sau96I	GGNCC	3 cut(s)	49, 200, 346
ScrFI	CCNGG	3 cut(s)	208, 497, 546
SduI	GDGCHC	1 cut(s)	556
SfaNI	GCATC	1 cut(s)	100
SgrAI	CRCCGGYG	1 cut(s)	20
SinI	GGWCC	2 cut(s)	49, 200
SmiMI	CAYNNNNRTG	2 cut(s)	429, 675
SmlI	CTYRAG	1 cut(s)	393
SmoI	CTYRAG	1 cut(s)	393
SphI	GCATGC	1 cut(s)	508
Sse9I	AATT	2 cut(s)	614, 970
SseBI	AGGCCT	1 cut(s)	755
SsiI	CCGC	7 cut(s)	27, 30, 33, 47, 167, 173, 580
SspMI	CTAG	3 cut(s)	189, 329, 623
StuI	AGGCCT	1 cut(s)	755
StyD4I	CCNGG	3 cut(s)	206, 495, 544
StyI	CCWWGG	1 cut(s)	793
TaaI	ACNGT	4 cut(s)	283, 290, 718, 857
TaiI	ACGT	2 cut(s)	315, 715
TaqI	TCGA	1 cut(s)	534
TasI	AATT	2 cut(s)	614, 970
TatI	WGTACW	1 cut(s)	852
TauI	GCSGC	2 cut(s)	30, 33
Tru1I	TTAA	3 cut(s)	321, 681, 973
Tru9I	TTAA	3 cut(s)	321, 681, 973
TscAI	CASTG	1 cut(s)	561
TseFI	GTSAC	2 cut(s)	890, 925
TseI	GCWGC	5 cut(s)	79, 179, 182, 185, 383
Tsp45I	GTSAC	2 cut(s)	890, 925
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	932
TspRI	CASTG	1 cut(s)	561
VneI	GTGCAC	1 cut(s)	552
VpaK11BI	GGWCC	2 cut(s)	49, 200
XbaI	TCTAGA	1 cut(s)	328
XceI	RCATGY	3 cut(s)	508, 697, 898
XspI	CTAG	3 cut(s)	189, 329, 623
ZraI	GACGTC	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.