AT3G01740

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014137
Physical Location & Seq
Forward (+)
267727 .. 269620
1894 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G01740.1

Sequence Viewer

Length: 381 bp
ATGAACCGTATTGGATTGATAAGGGGATCATCATCCAAGGATGTAGTCCGGAGAACGTTTGCAGCAGCAGCTAGTAAAGCCAAGAAAGGTGGCAAAGGAGGTGGAGCCAGCGATGCTCCTAAAGGTTCCAGCTTGACCAAAGAGATCAAATCCACCACTGTTGTTGGTGCCAATACTCTCAAAGACGGATCTGATCCCAAGATCTTGCCTGATTCTGATTACCCTGATTGGCTCTGGCATCTCCTCGATAAGCGACCAGCTCTCAGTGAGCTTAGGAGGAAGAACGTCGAGACTCTTCCCTACGATGATCTCAAACGTTTTGTCAAGCTCGACACACGGGGTAAAATCAAGGAGAACAACTCCATCAAGGCCAAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L37

Protein Analysis

126

Amino Acids

13.76

Weight (kDa)

10.08

Isoelectric Point (pI)

39.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L37 PF08561 47 - 123 1e-21 Mitochondrial ribosomal protein L37
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014137)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01740 AT5G14290
fragaria_vesca FvH4_6g02050
prunus_persica Prupe.6G125800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0449841
rosa_laevigata RLG00000025788 RLG00000025790
rosa_multiflora Rmu_sc0000610.1_g000005 Rmu_sc0013983.1_g000001 Rmu_sc0037111.1_g000001
rosa_roxburghii Rroxscaffold_6G00427670
rosa_rugosa Rorug02G0623700
rosa_samantha Rh3AG021900 Rh3BG022600 Rh3CG021400 Rh3DG022300
rosa_wichuraiana Rw3G001800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 167
AccIII TCCGGA 1 cut(s) 48
AclI AACGTT 2 cut(s) 56, 316
AclWI GGATC 3 cut(s) 34, 188, 196
AluBI AGCT 5 cut(s) 71, 132, 260, 271, 328
AluI AGCT 5 cut(s) 71, 132, 260, 271, 328
Alw26I GTCTC 1 cut(s) 284
AlwI GGATC 3 cut(s) 34, 188, 196
Aor13HI TCCGGA 1 cut(s) 48
AoxI GGCC 1 cut(s) 369
ApeKI GCWGC 3 cut(s) 62, 65, 68
ArsI GACNNNNNNTTYG 2 cut(s) 306, 338
BanI GGYRCC 1 cut(s) 167
BbvI GCAGC 3 cut(s) 74, 77, 80
BccI CCATC 1 cut(s) 371
BcoDI GTCTC 1 cut(s) 284
BfaI CTAG 1 cut(s) 72
BglII AGATCT 1 cut(s) 201
BisI GCNGC 3 cut(s) 63, 66, 69
BlsI GCNGC 3 cut(s) 64, 67, 70
BmiI GGNNCC 3 cut(s) 106, 127, 169
BmsI GCATC 2 cut(s) 103, 247
BplI GAGNNNNNCTC 2 cut(s) 344, 376
Bpu10I CCTNAGC 1 cut(s) 272
BsaBI GATNNNNATC 1 cut(s) 31
BsaJI CCNNGG 1 cut(s) 36
BsaWI WCCGGW 1 cut(s) 48
Bse8I GATNNNNATC 1 cut(s) 31
BseAI TCCGGA 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 2 cut(s) 32, 46
BseJI GATNNNNATC 1 cut(s) 31
BseMII CTCAG 1 cut(s) 277
BseRI GAGGAG 1 cut(s) 233
BseXI GCAGC 3 cut(s) 74, 77, 80
BshFI GGCC 1 cut(s) 371
BshNI GGYRCC 1 cut(s) 167
BsiSI CCGG 1 cut(s) 49
BsmAI GTCTC 1 cut(s) 284
BsnI GGCC 1 cut(s) 371
Bsp13I TCCGGA 1 cut(s) 48
Bsp143I GATC 6 cut(s) 26, 144, 188, 193, 201, 307
BspANI GGCC 1 cut(s) 371
BspCNI CTCAG 1 cut(s) 276
BspEI TCCGGA 1 cut(s) 48
BspLI GGNNCC 3 cut(s) 106, 127, 169
BspPI GGATC 3 cut(s) 34, 188, 196
BspT107I GGYRCC 1 cut(s) 167
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 6 cut(s) 26, 144, 188, 193, 201, 307
BssT1I CCWWGG 1 cut(s) 36
Bst4CI ACNGT 2 cut(s) 8, 160
Bst6I CTCTTC 1 cut(s) 300
BstC8I GCNNGC 1 cut(s) 109
BstDEI CTNAG 2 cut(s) 263, 272
BstF5I GGATG 2 cut(s) 32, 46
BstKTI GATC 6 cut(s) 29, 147, 191, 196, 204, 310
BstMAI GTCTC 1 cut(s) 284
BstMBI GATC 6 cut(s) 26, 144, 188, 193, 201, 307
BstMWI GCNNNNNNNGC 3 cut(s) 68, 77, 113
BstV1I GCAGC 3 cut(s) 74, 77, 80
BstX2I RGATCY 2 cut(s) 188, 201
BstYI RGATCY 2 cut(s) 188, 201
BsuRI GGCC 1 cut(s) 371
BtgZI GCGATG 1 cut(s) 126
BtsCI GGATG 2 cut(s) 32, 46
BtsIMutI CAGTG 2 cut(s) 156, 271
Cac8I GCNNGC 1 cut(s) 109
CspCI CAANNNNNGTGG 8 cut(s) 70, 82, 105, 117, 142, 145, 177, 180
CviJI RGCY 9 cut(s) 71, 80, 107, 132, 232, 260, 271, 328, 371
CviKI_1 RGCY 9 cut(s) 71, 80, 107, 132, 232, 260, 271, 328, 371
DdeI CTNAG 2 cut(s) 263, 272
DpnI GATC 6 cut(s) 28, 146, 190, 195, 203, 309
DpnII GATC 6 cut(s) 26, 144, 188, 193, 201, 307
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
Eco130I CCWWGG 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 36
Fnu4HI GCNGC 3 cut(s) 63, 66, 69
FokI GGATG 2 cut(s) 19, 53
Fsp4HI GCNGC 3 cut(s) 63, 66, 69
FspBI CTAG 1 cut(s) 72
GluI GCNGC 3 cut(s) 63, 66, 69
HaeIII GGCC 1 cut(s) 371
HapII CCGG 1 cut(s) 49
HinfI GANTC 2 cut(s) 212, 292
HpaII CCGG 1 cut(s) 49
Hpy188I TCNGA 2 cut(s) 193, 217
Hpy188III TCNNGA 2 cut(s) 49, 289
Hpy99I CGWCG 1 cut(s) 290
HpyCH4III ACNGT 2 cut(s) 8, 160
HpyCH4IV ACGT 3 cut(s) 56, 285, 316
HpyCH4V TGCA 1 cut(s) 62
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 77, 113
HpyF3I CTNAG 2 cut(s) 263, 272
HpySE526I ACGT 3 cut(s) 56, 285, 316
Kpn2I TCCGGA 1 cut(s) 48
Kzo9I GATC 6 cut(s) 26, 144, 188, 193, 201, 307
LmnI GCTCC 2 cut(s) 104, 121
LpnPI CCDG 7 cut(s) 62, 121, 142, 220, 222, 237, 270
Lsp1109I GCAGC 3 cut(s) 74, 77, 80
LweI GCATC 2 cut(s) 103, 247
MaeI CTAG 1 cut(s) 72
MaeII ACGT 3 cut(s) 56, 285, 316
MalI GATC 6 cut(s) 28, 146, 190, 195, 203, 309
MboI GATC 6 cut(s) 26, 144, 188, 193, 201, 307
MboII GAAGA 2 cut(s) 287, 292
MflI RGATCY 2 cut(s) 188, 201
MlyI GAGTC 1 cut(s) 286
MnlI CCTC 3 cut(s) 92, 254, 270
MroI TCCGGA 1 cut(s) 48
MspI CCGG 1 cut(s) 49
MwoI GCNNNNNNNGC 3 cut(s) 68, 77, 113
NdeII GATC 6 cut(s) 26, 144, 188, 193, 201, 307
NlaIV GGNNCC 3 cut(s) 106, 127, 169
PfeI GAWTC 1 cut(s) 212
PkrI GCNGC 3 cut(s) 64, 67, 70
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
Psp1406I AACGTT 2 cut(s) 56, 316
PspN4I GGNNCC 3 cut(s) 106, 127, 169
PsuI RGATCY 2 cut(s) 188, 201
SatI GCNGC 3 cut(s) 63, 66, 69
Sau3AI GATC 6 cut(s) 26, 144, 188, 193, 201, 307
SchI GAGTC 1 cut(s) 286
SfaNI GCATC 2 cut(s) 103, 247
SspMI CTAG 1 cut(s) 72
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 2 cut(s) 8, 160
TaiI ACGT 3 cut(s) 59, 288, 319
TaqI TCGA 3 cut(s) 246, 288, 330
TfiI GAWTC 1 cut(s) 212
TscAI CASTG 2 cut(s) 163, 271
TseI GCWGC 3 cut(s) 62, 65, 68
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 201
TspRI CASTG 2 cut(s) 163, 271
XspI CTAG 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.