RLG00000025788

54S ribosomal protein L37, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0014137
Physical Location & Seq
Forward (+)
48282296 .. 48283618
1323 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025788

Sequence Viewer

Length: 510 bp
ATGAATCGCTCACTCTCTCACCGTCGGAAAGTTTCACTCGCCGATCAAATCTCCGATATTGGTTCGCCGATTACCTACGAACGGCCGAAAGGGATAATAACTAGAGTTATGGCTATAAGTCACGCGAGATCGTTGAGGAGCGTTATCAATTCCATGGAATTGGAAGCAGTTGGGGTATTAGTTTCAGGGCGACGAGCATTTTCTGCCAAGGCAAAGAAGGGTGGCAAAGGTGGTGCTGGTGATGCACCGAAGGCGTCAATTTTAGACAAGGAAGTTAAGTCTACGACTGTGGTTGGAGCTAATATACTCAAGGATGGGACGGATCCTAAAATCTTGTCAGATTCCGAGTACCCTGAATGGCTTTGGCATCTGATTGATAAGCGTCCTGCGTTGAGTGAACTGAGAAGGAAGAACATTGAAACTCTCCCCTATGAAGATCTCAAGCGATTTGTTAAGCTGGATAACTGGGCAAGGATCAAGGAGAACAACTCGCTAAAGGCCAAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L37

Protein Analysis

170

Amino Acids

18.8

Weight (kDa)

10.03

Isoelectric Point (pI)

51.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L37 PF08561 89 - 166 1.9e-21 Mitochondrial ribosomal protein L37
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014137)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01740 AT5G14290
fragaria_vesca FvH4_6g02050
prunus_persica Prupe.6G125800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0449841
rosa_laevigata RLG00000025788 RLG00000025790
rosa_multiflora Rmu_sc0000610.1_g000005 Rmu_sc0013983.1_g000001 Rmu_sc0037111.1_g000001
rosa_roxburghii Rroxscaffold_6G00427670
rosa_rugosa Rorug02G0623700
rosa_samantha Rh3AG021900 Rh3BG022600 Rh3CG021400 Rh3DG022300
rosa_wichuraiana Rw3G001800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 281
AccII CGCG 1 cut(s) 125
AclWI GGATC 3 cut(s) 317, 330, 482
AcoI YGGCCR 1 cut(s) 83
AcyI GRCGYC 1 cut(s) 254
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 1 cut(s) 81
AgsI TTSAA 1 cut(s) 419
AluBI AGCT 2 cut(s) 299, 457
AluI AGCT 2 cut(s) 299, 457
AlwI GGATC 3 cut(s) 317, 330, 482
AoxI GGCC 2 cut(s) 83, 498
AsuHPI GGTGA 2 cut(s) 11, 251
BamHI GGATCC 1 cut(s) 322
BccI CCATC 1 cut(s) 308
BceAI ACGGC 1 cut(s) 98
BfaI CTAG 2 cut(s) 102, 508
BglII AGATCT 1 cut(s) 436
BmiI GGNNCC 1 cut(s) 324
BmrI ACTGGG 1 cut(s) 475
BmsI GCATC 2 cut(s) 232, 376
BmuI ACTGGG 1 cut(s) 475
BplI GAGNNNNNCTC 2 cut(s) 473, 505
BpuEI CTTGAG 2 cut(s) 293, 425
BsaHI GRCGYC 1 cut(s) 254
BsaJI CCNNGG 2 cut(s) 153, 207
Bsc4I CCNNNNNNNGG 1 cut(s) 81
Bse1I ACTGG 1 cut(s) 470
BseDI CCNNGG 2 cut(s) 153, 207
BseGI GGATG 1 cut(s) 319
BseLI CCNNNNNNNGG 1 cut(s) 81
BseMII CTCAG 1 cut(s) 392
BseNI ACTGG 1 cut(s) 470
BseRI GAGGAG 1 cut(s) 151
BseX3I CGGCCG 1 cut(s) 83
Bsh1236I CGCG 1 cut(s) 125
Bsh1285I CGRYCG 1 cut(s) 86
BshFI GGCC 2 cut(s) 85, 500
BsiEI CGRYCG 1 cut(s) 86
BslFI GGGAC 1 cut(s) 331
BslI CCNNNNNNNGG 1 cut(s) 81
BsmFI GGGAC 1 cut(s) 331
BsnI GGCC 2 cut(s) 85, 500
Bsp143I GATC 5 cut(s) 43, 128, 322, 436, 474
Bsp19I CCATGG 1 cut(s) 153
BspANI GGCC 2 cut(s) 85, 500
BspCNI CTCAG 1 cut(s) 393
BspFNI CGCG 1 cut(s) 125
BspLI GGNNCC 1 cut(s) 324
BspPI GGATC 3 cut(s) 317, 330, 482
BsrI ACTGG 1 cut(s) 470
BssECI CCNNGG 2 cut(s) 153, 207
BssMI GATC 5 cut(s) 43, 128, 322, 436, 474
BssNI GRCGYC 1 cut(s) 254
BssT1I CCWWGG 2 cut(s) 153, 207
Bst4CI ACNGT 2 cut(s) 23, 289
BstACI GRCGYC 1 cut(s) 254
BstAPI GCANNNNNTGC 1 cut(s) 203
BstDEI CTNAG 1 cut(s) 401
BstDSI CCRYGG 1 cut(s) 153
BstF5I GGATG 1 cut(s) 319
BstFNI CGCG 1 cut(s) 125
BstKTI GATC 5 cut(s) 46, 131, 325, 439, 477
BstMBI GATC 5 cut(s) 43, 128, 322, 436, 474
BstMCI CGRYCG 1 cut(s) 86
BstMWI GCNNNNNNNGC 3 cut(s) 203, 242, 251
BstUI CGCG 1 cut(s) 125
BstX2I RGATCY 2 cut(s) 322, 436
BstXI CCANNNNNNTGG 1 cut(s) 160
BstYI RGATCY 2 cut(s) 322, 436
BstZI CGGCCG 1 cut(s) 83
BsuRI GGCC 2 cut(s) 85, 500
BtgI CCRYGG 1 cut(s) 153
BtsCI GGATG 1 cut(s) 319
CseI GACGC 2 cut(s) 243, 371
Csp6I GTAC 1 cut(s) 349
CviAII CATG 1 cut(s) 154
CviJI RGCY 6 cut(s) 85, 113, 299, 361, 457, 500
CviKI_1 RGCY 6 cut(s) 85, 113, 299, 361, 457, 500
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 1 cut(s) 401
DpnI GATC 5 cut(s) 45, 130, 324, 438, 476
DpnII GATC 5 cut(s) 43, 128, 322, 436, 474
EaeI YGGCCR 1 cut(s) 83
EagI CGGCCG 1 cut(s) 83
EclXI CGGCCG 1 cut(s) 83
Eco130I CCWWGG 2 cut(s) 153, 207
Eco52I CGGCCG 1 cut(s) 83
EcoT14I CCWWGG 2 cut(s) 153, 207
ErhI CCWWGG 2 cut(s) 153, 207
FaeI CATG 1 cut(s) 157
FaiI YATR 5 cut(s) 110, 116, 155, 305, 432
FaqI GGGAC 1 cut(s) 331
FatI CATG 1 cut(s) 153
FblI GTMKAC 1 cut(s) 281
FokI GGATG 1 cut(s) 326
FspBI CTAG 2 cut(s) 102, 508
HaeIII GGCC 2 cut(s) 85, 500
HgaI GACGC 2 cut(s) 243, 371
Hin1I GRCGYC 1 cut(s) 254
Hin1II CATG 1 cut(s) 157
HinfI GANTC 2 cut(s) 4, 341
HphI GGTGA 2 cut(s) 11, 251
Hpy166II GTNNAC 2 cut(s) 282, 398
Hpy188I TCNGA 5 cut(s) 27, 55, 340, 346, 372
Hpy8I GTNNAC 2 cut(s) 282, 398
Hpy99I CGWCG 2 cut(s) 27, 195
HpyAV CCTTC 3 cut(s) 211, 244, 399
HpyCH4III ACNGT 2 cut(s) 23, 289
HpyCH4V TGCA 1 cut(s) 245
HpyF10VI GCNNNNNNNGC 3 cut(s) 203, 242, 251
HpyF3I CTNAG 1 cut(s) 401
Hsp92I GRCGYC 1 cut(s) 254
Hsp92II CATG 1 cut(s) 157
Kzo9I GATC 5 cut(s) 43, 128, 322, 436, 474
LmnI GCTCC 2 cut(s) 138, 296
LpnPI CCDG 6 cut(s) 171, 222, 366, 399, 443, 451
LweI GCATC 2 cut(s) 232, 376
MaeI CTAG 2 cut(s) 102, 508
MaeIII GTNAC 1 cut(s) 119
MalI GATC 5 cut(s) 45, 130, 324, 438, 476
MboI GATC 5 cut(s) 43, 128, 322, 436, 474
MboII GAAGA 2 cut(s) 421, 446
MflI RGATCY 2 cut(s) 322, 436
MluCI AATT 3 cut(s) 148, 158, 258
MmeI TCCRAC 2 cut(s) 5, 274
MnlI CCTC 1 cut(s) 129
MseI TTAA 2 cut(s) 276, 453
MvnI CGCG 1 cut(s) 125
MwoI GCNNNNNNNGC 3 cut(s) 203, 242, 251
NcoI CCATGG 1 cut(s) 153
NdeII GATC 5 cut(s) 43, 128, 322, 436, 474
NlaIII CATG 1 cut(s) 157
NlaIV GGNNCC 1 cut(s) 324
NmuCI GTSAC 1 cut(s) 119
PfeI GAWTC 2 cut(s) 4, 341
PspN4I GGNNCC 1 cut(s) 324
PsuI RGATCY 2 cut(s) 322, 436
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
SaqAI TTAA 2 cut(s) 276, 453
Sau3AI GATC 5 cut(s) 43, 128, 322, 436, 474
SetI ASST 4 cut(s) 77, 232, 301, 459
SfaNI GCATC 2 cut(s) 232, 376
SmlI CTYRAG 2 cut(s) 308, 440
SmoI CTYRAG 2 cut(s) 308, 440
Sse9I AATT 3 cut(s) 148, 158, 258
SspMI CTAG 2 cut(s) 102, 508
StyI CCWWGG 2 cut(s) 153, 207
TaaI ACNGT 2 cut(s) 23, 289
TasI AATT 3 cut(s) 148, 158, 258
TfiI GAWTC 2 cut(s) 4, 341
Tru1I TTAA 2 cut(s) 276, 453
Tru9I TTAA 2 cut(s) 276, 453
TseFI GTSAC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 2 cut(s) 17, 447
TspGWI ACGGA 1 cut(s) 335
XmiI GTMKAC 1 cut(s) 281
XspI CTAG 2 cut(s) 102, 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.