FvH4_6g02050

54S ribosomal protein L37, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014137
Physical Location & Seq
Reverse (-)
1200124 .. 1201299
1176 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g02050.t1

Sequence Viewer

Length: 615 bp
TTGAGAATTTGTAGATCAAGTCAGAGATGCATACTGCATTGGATTCAAATACCCAACCCGGCCCATACCCGACGGAGGCCCAGAGAACCCTTATACTTCAACATCTCTCCTCATCTTTTTTTCTTCCTCTCTCACTCACTCTCTCACCGTCGCAGAGTTTCACGCCGATCAAATCTCCGAGGTTTGGTGGAGGGAAAGATAATAGCTGCAGTTATGGCTATGAGTCACACGAGATCGTTGAGGAGGGTTATCAATTCCACGGAATTGGATGCAGGTGCGGTGTTAGTGTCGGGGCGTCGAGCATTGTCTGCTAAAGCAAAGAAGGGTTCGAAAGGCGGGGCTGGTGATGCACCGAAAGCCTCAATTTTGGACAAGGAAGTCAAGTCTACGACTGTGGTTGGAGCCAATATACTCAAGGATGGGACGGATCCTAAAATCTTGCCTGATTCAGAGTACCCTGAATGGCTTTGGCATCTGGTTGATAAGCGTCCTGCGTTGAGTGAACTGAGAAGGAAGGACATTGAAACTCTCCCTTATGAAGATCTCAAGCGTTTTGTTAAGCTGGATAACCGGGCAAGGATCAAGGAGAACAACTCGCTAAAGGCCAAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L37

Protein Analysis

205

Amino Acids

23.19

Weight (kDa)

10.72

Isoelectric Point (pI)

69.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L37 PF08561 124 - 201 5e-23 Mitochondrial ribosomal protein L37
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014137)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01740 AT5G14290
fragaria_vesca FvH4_6g02050
prunus_persica Prupe.6G125800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0449841
rosa_laevigata RLG00000025788 RLG00000025790
rosa_multiflora Rmu_sc0000610.1_g000005 Rmu_sc0013983.1_g000001 Rmu_sc0037111.1_g000001
rosa_roxburghii Rroxscaffold_6G00427670
rosa_rugosa Rorug02G0623700
rosa_samantha Rh3AG021900 Rh3BG022600 Rh3CG021400 Rh3DG022300
rosa_wichuraiana Rw3G001800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 263
AasI GACNNNNNNGTC 1 cut(s) 377
Acc36I ACCTGC 1 cut(s) 263
AccI GTMKAC 1 cut(s) 386
AciI CCGC 2 cut(s) 278, 336
AclWI GGATC 3 cut(s) 422, 435, 587
AcsI RAATTY 1 cut(s) 6
AcyI GRCGYC 1 cut(s) 295
AfaI GTAC 1 cut(s) 455
AfiI CCNNNNNNNGG 2 cut(s) 75, 184
AgsI TTSAA 3 cut(s) 47, 100, 524
AluBI AGCT 2 cut(s) 206, 562
AluI AGCT 2 cut(s) 206, 562
AlwI GGATC 3 cut(s) 422, 435, 587
AoxI GGCC 3 cut(s) 60, 77, 603
ApeKI GCWGC 1 cut(s) 206
ApoI RAATTY 1 cut(s) 6
AspS9I GGNCC 2 cut(s) 61, 78
AsuC2I CCSGG 2 cut(s) 59, 572
AsuHPI GGTGA 2 cut(s) 137, 356
AsuII TTCGAA 1 cut(s) 329
BamHI GGATCC 1 cut(s) 427
BauI CACGAG 1 cut(s) 229
BbvI GCAGC 1 cut(s) 193
BccI CCATC 1 cut(s) 413
BcnI CCSGG 2 cut(s) 59, 572
BfaI CTAG 1 cut(s) 613
BfmI CTRYAG 1 cut(s) 207
BfuAI ACCTGC 1 cut(s) 263
BglII AGATCT 1 cut(s) 541
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
Bme1390I CCNGG 2 cut(s) 59, 572
BmgT120I GGNCC 2 cut(s) 61, 78
BmiI GGNNCC 2 cut(s) 403, 429
BmrFI CCNGG 2 cut(s) 59, 572
BmsI GCATC 4 cut(s) 17, 259, 337, 481
BplI GAGNNNNNCTC 2 cut(s) 578, 610
Bpu14I TTCGAA 1 cut(s) 329
BpuEI CTTGAG 2 cut(s) 398, 530
BpuMI CCSGG 2 cut(s) 59, 572
BsaHI GRCGYC 1 cut(s) 295
BsaJI CCNNGG 2 cut(s) 178, 258
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 184
BseDI CCNNGG 2 cut(s) 178, 258
BseGI GGATG 2 cut(s) 274, 424
BseLI CCNNNNNNNGG 2 cut(s) 75, 184
BseMII CTCAG 1 cut(s) 497
BseRI GAGGAG 2 cut(s) 99, 256
BseXI GCAGC 1 cut(s) 193
BshFI GGCC 3 cut(s) 62, 79, 605
BsiSI CCGG 2 cut(s) 59, 571
BslFI GGGAC 1 cut(s) 436
BslI CCNNNNNNNGG 2 cut(s) 75, 184
BsmFI GGGAC 1 cut(s) 436
BsnI GGCC 3 cut(s) 62, 79, 605
Bsp119I TTCGAA 1 cut(s) 329
Bsp143I GATC 6 cut(s) 14, 167, 233, 427, 541, 579
BspACI CCGC 2 cut(s) 278, 336
BspANI GGCC 3 cut(s) 62, 79, 605
BspCNI CTCAG 1 cut(s) 498
BspLI GGNNCC 2 cut(s) 403, 429
BspMAI CTGCAG 1 cut(s) 211
BspMI ACCTGC 1 cut(s) 263
BspPI GGATC 3 cut(s) 422, 435, 587
BspT104I TTCGAA 1 cut(s) 329
BssECI CCNNGG 2 cut(s) 178, 258
BssMI GATC 6 cut(s) 14, 167, 233, 427, 541, 579
BssNI GRCGYC 1 cut(s) 295
BssSI CACGAG 1 cut(s) 229
Bst2BI CACGAG 1 cut(s) 229
Bst4CI ACNGT 2 cut(s) 149, 394
BstACI GRCGYC 1 cut(s) 295
BstAPI GCANNNNNTGC 1 cut(s) 308
BstBI TTCGAA 1 cut(s) 329
BstDEI CTNAG 1 cut(s) 506
BstDSI CCRYGG 1 cut(s) 258
BstF5I GGATG 2 cut(s) 274, 424
BstKTI GATC 6 cut(s) 17, 170, 236, 430, 544, 582
BstMBI GATC 6 cut(s) 14, 167, 233, 427, 541, 579
BstMWI GCNNNNNNNGC 4 cut(s) 215, 308, 347, 356
BstSCI CCNGG 2 cut(s) 57, 570
BstSFI CTRYAG 1 cut(s) 207
BstV1I GCAGC 1 cut(s) 193
BstX2I RGATCY 2 cut(s) 427, 541
BstXI CCANNNNNNTGG 1 cut(s) 265
BstYI RGATCY 2 cut(s) 427, 541
BsuRI GGCC 3 cut(s) 62, 79, 605
BtgI CCRYGG 1 cut(s) 258
BtsCI GGATG 2 cut(s) 274, 424
BveI ACCTGC 1 cut(s) 263
Cfr13I GGNCC 2 cut(s) 61, 78
CseI GACGC 2 cut(s) 284, 476
Csp6I GTAC 1 cut(s) 454
CviQI GTAC 1 cut(s) 454
DdeI CTNAG 1 cut(s) 506
DpnI GATC 6 cut(s) 16, 169, 235, 429, 543, 581
DpnII GATC 6 cut(s) 14, 167, 233, 427, 541, 579
DrdI GACNNNNNNGTC 1 cut(s) 377
DseDI GACNNNNNNGTC 1 cut(s) 377
EcoT22I ATGCAT 1 cut(s) 32
FaiI YATR 7 cut(s) 32, 66, 94, 215, 221, 410, 537
FaqI GGGAC 1 cut(s) 436
FauI CCCGC 1 cut(s) 329
FblI GTMKAC 1 cut(s) 386
Fnu4HI GCNGC 1 cut(s) 207
FokI GGATG 2 cut(s) 281, 431
Fsp4HI GCNGC 1 cut(s) 207
FspBI CTAG 1 cut(s) 613
GluI GCNGC 1 cut(s) 207
HaeIII GGCC 3 cut(s) 62, 79, 605
HapII CCGG 2 cut(s) 59, 571
HgaI GACGC 2 cut(s) 284, 476
Hin1I GRCGYC 1 cut(s) 295
HinfI GANTC 3 cut(s) 43, 223, 446
HpaII CCGG 2 cut(s) 59, 571
HphI GGTGA 2 cut(s) 137, 356
Hpy166II GTNNAC 2 cut(s) 387, 503
Hpy188I TCNGA 3 cut(s) 24, 179, 451
Hpy8I GTNNAC 2 cut(s) 387, 503
Hpy99I CGWCG 3 cut(s) 75, 153, 300
HpyAV CCTTC 3 cut(s) 316, 504, 508
HpyCH4III ACNGT 2 cut(s) 149, 394
HpyCH4V TGCA 5 cut(s) 30, 37, 209, 272, 350
HpyF10VI GCNNNNNNNGC 4 cut(s) 215, 308, 347, 356
HpyF3I CTNAG 1 cut(s) 506
Hsp92I GRCGYC 1 cut(s) 295
Kzo9I GATC 6 cut(s) 14, 167, 233, 427, 541, 579
LmnI GCTCC 1 cut(s) 401
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 4 cut(s) 17, 259, 337, 481
MaeI CTAG 1 cut(s) 613
MaeIII GTNAC 1 cut(s) 224
MalI GATC 6 cut(s) 16, 169, 235, 429, 543, 581
MboI GATC 6 cut(s) 14, 167, 233, 427, 541, 579
MboII GAAGA 2 cut(s) 115, 551
MflI RGATCY 2 cut(s) 427, 541
MluCI AATT 4 cut(s) 6, 253, 263, 363
MlyI GAGTC 1 cut(s) 232
MmeI TCCRAC 1 cut(s) 379
MnlI CCTC 8 cut(s) 69, 120, 137, 173, 184, 234, 237, 370
Mph1103I ATGCAT 1 cut(s) 32
MseI TTAA 1 cut(s) 558
MspI CCGG 2 cut(s) 59, 571
MspR9I CCNGG 2 cut(s) 59, 572
MwoI GCNNNNNNNGC 4 cut(s) 215, 308, 347, 356
NciI CCSGG 2 cut(s) 59, 572
NdeII GATC 6 cut(s) 14, 167, 233, 427, 541, 579
NlaIV GGNNCC 2 cut(s) 403, 429
NmuCI GTSAC 1 cut(s) 224
NsiI ATGCAT 1 cut(s) 32
NspV TTCGAA 1 cut(s) 329
PaqCI CACCTGC 1 cut(s) 263
PfeI GAWTC 2 cut(s) 43, 446
PkrI GCNGC 1 cut(s) 208
PleI GAGTC 1 cut(s) 231
PpsI GAGTC 1 cut(s) 231
PspN4I GGNNCC 2 cut(s) 403, 429
PspPI GGNCC 2 cut(s) 61, 78
PstI CTGCAG 1 cut(s) 211
PsuI RGATCY 2 cut(s) 427, 541
RsaI GTAC 1 cut(s) 455
RsaNI GTAC 1 cut(s) 454
SaqAI TTAA 1 cut(s) 558
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 6 cut(s) 14, 167, 233, 427, 541, 579
Sau96I GGNCC 2 cut(s) 61, 78
SchI GAGTC 1 cut(s) 232
ScrFI CCNGG 2 cut(s) 59, 572
SetI ASST 4 cut(s) 184, 208, 277, 564
SfaNI GCATC 4 cut(s) 17, 259, 337, 481
SfcI CTRYAG 1 cut(s) 207
SfuI TTCGAA 1 cut(s) 329
SmlI CTYRAG 2 cut(s) 413, 545
SmoI CTYRAG 2 cut(s) 413, 545
Sse9I AATT 4 cut(s) 6, 253, 263, 363
SsiI CCGC 2 cut(s) 278, 336
SspMI CTAG 1 cut(s) 613
StyD4I CCNGG 2 cut(s) 57, 570
TaaI ACNGT 2 cut(s) 149, 394
TaqI TCGA 2 cut(s) 298, 329
TasI AATT 4 cut(s) 6, 253, 263, 363
TfiI GAWTC 2 cut(s) 43, 446
Tru1I TTAA 1 cut(s) 558
Tru9I TTAA 1 cut(s) 558
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 1 cut(s) 206
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 1 cut(s) 552
TspGWI ACGGA 3 cut(s) 88, 275, 440
XapI RAATTY 1 cut(s) 6
XmiI GTMKAC 1 cut(s) 386
XspI CTAG 1 cut(s) 613
Zsp2I ATGCAT 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.