Rorug02G0623700
TCP Family

54S ribosomal protein L37, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000293
Physical Location & Seq
Reverse (-)
73986098 .. 73989611
3514 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0623700.1

Sequence Viewer

Length: 1029 bp
ATGATGAAGACGTCATCGATGACGGAGCTCGATGACGAAACGGTGCGCAGCATGGCCATCGGCGCCGTCTTCTCGGACTTCGGTGGGAAGATAAACTCACTCGATTTTCATCGAAAGGAAGATTTACTTGTTACTGCCAGTGAGGATGACTCTGTGCGACTCTATGACATTGCAACTGCTAAGTTGCTGAAGACCACATATCATAAGAAACATGGAGCAGATCGCATATGCTTTACTCATCACCCAAGCTCTGTGATATGCTCTTCAAGATACAACTTGGATTCTACCGGAGAATCACTGCGGTATTTGTCAATGTATGATAATCGATGCCTTCGCTACTTCAAAGGCCATAAAGAGAGAATTGTTTCGCTCTGTATGTCTCCTATCAACGATAGCTTCATGTCTGGTTCATTGGATCACAGTGTCCGAATATGGGATCTTCGTGTAAATACATGCCAGGGAATTTTACATCTTCGTGGTAGACCGACAGTGGCCTATGACCAACAAGGTCTTGTTTTCGCTGTAGCTATGGAAGGGGGTGCTATCAAGTTGTTTGATTCACGCTCCTATGACAAGGGCCCATTTGATACGTTTTTAGTTGGTGGAGATACAGCTGAAGTTTGCGATATCAAATTTAGCAGTGATGGCAAATCAATGCTCCTGACCACCACGAACAATAACATCTATGTTCTTGATGCCTATGCAGGAGAGAAGCGATGTGGTTACAGCATGGAACCATCTCCAAATACGAGTATAGAGGCAACATTTACCCCAGATGGCCAGTACGTGTTGTCAGGCTCTGGAGATGGAAATTTGCATGCTTGGAGCATTAACAGGCGGAATGAGGTCGCAAGCTGGAACAGCCATATTGGAGTCCCATCATGTTTGAAGTGGGCTCCTCGCAGAGCTATGTTTGCTGCTGCGTCGACTGTTCTCACCTTTTGGATACCAAACGATTCAAACGCTGATCCCACTGTTATGGACACTGAGCTCACTGCCGGTGCTGAATCGCAACATCCTTCTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L37

Protein Analysis

342

Amino Acids

37.89

Weight (kDa)

5.87

Isoelectric Point (pI)

46.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_Prp19 PF24814 22 - 222 3.4e-20 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 27 - 90 2.9e-06 THOC3 beta-propeller domain
WD40_CDC20-Fz PF24807 27 - 151 2.5e-11 CDC20/Fizzy WD40 domain
Beta-prop_WDR5 PF25175 30 - 310 3e-36 WDR5 beta-propeller domain
WDR55 PF24796 30 - 152 2.7e-06 WDR55
Beta-prop_WDR3_2nd PF25172 31 - 309 4.8e-12 WDR3 second beta-propeller domain
Beta-prop_WDR75_1st PF23869 88 - 147 1e-05 WD repeat-containing protein 75 first beta-propeller
WD40_WDHD1_1st PF24817 98 - 230 1.2e-08 WDHD1 first WD40 domain
Beta-prop_WDR3_1st PF25173 99 - 160 6.2e-07 WDR3 first beta-propeller domain
WD40 PF00400 109 - 146 2.7e-07 WD domain, G-beta repeat
Beta-prop_THOC3 PF25174 109 - 309 7.9e-23 THOC3 beta-propeller domain
Beta-prop_EML PF23409 112 - 296 5.4e-07 Echinoderm microtubule-associated protein first beta-propeller
WD40_Gbeta PF25391 113 - 275 1.4e-10 G protein beta WD-40 repeat protein
Beta-prop_WDR36-Utp21_2nd PF25168 115 - 238 2.8e-06 WDR36/Utp21 second beta-propeller domain
Beta-prop_EML_2 PF23414 123 - 285 5e-16 Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st PF24817 164 - 288 1.7e-08 WDHD1 first WD40 domain
Beta-prop_WDR3_1st PF25173 164 - 307 2.2e-08 WDR3 first beta-propeller domain
WDR55 PF24796 172 - 310 6e-06 WDR55
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000293)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca FvH4_3g08160 FvH4_3g18740
malus_domestica MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis pycom03g18430 pycom11g22850
rosa_chinensis RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 14
Acc16I TGCGCA 1 cut(s) 47
AccB1I GGYRCC 1 cut(s) 62
AccI GTMKAC 2 cut(s) 481, 926
AciI CCGC 2 cut(s) 301, 838
AclWI GGATC 3 cut(s) 423, 444, 962
AcoI YGGCCR 2 cut(s) 54, 778
AcsI RAATTY 3 cut(s) 462, 632, 811
AcuI CTGAAG 2 cut(s) 209, 636
AcyI GRCGYC 2 cut(s) 11, 63
AfaI GTAC 1 cut(s) 785
AfiI CCNNNNNNNGG 1 cut(s) 433
AflIII ACRYGT 1 cut(s) 786
AgsI TTSAA 4 cut(s) 267, 343, 889, 960
AjnI CCWGG 1 cut(s) 456
AluBI AGCT 8 cut(s) 28, 249, 396, 527, 614, 855, 908, 991
AluI AGCT 8 cut(s) 28, 249, 396, 527, 614, 855, 908, 991
Alw21I GWGCWC 2 cut(s) 30, 993
Alw26I GTCTC 1 cut(s) 384
AlwI GGATC 3 cut(s) 423, 444, 962
AlwNI CAGNNNCTG 1 cut(s) 800
AoxI GGCC 5 cut(s) 54, 346, 492, 577, 778
ApaI GGGCCC 1 cut(s) 581
ApeKI GCWGC 3 cut(s) 48, 917, 920
ApoI RAATTY 3 cut(s) 462, 632, 811
Asp700I GAANNNNTTC 1 cut(s) 364
AspLEI GCGC 2 cut(s) 48, 65
AspS9I GGNCC 2 cut(s) 577, 578
AsuHPI GGTGA 2 cut(s) 233, 928
BaeGI GKGCMC 1 cut(s) 581
BalI TGGCCA 2 cut(s) 56, 780
BanI GGYRCC 1 cut(s) 62
BanII GRGCYC 4 cut(s) 30, 581, 898, 993
BbsI GAAGAC 3 cut(s) 14, 61, 197
Bbv12I GWGCWC 2 cut(s) 30, 993
BbvI GCAGC 3 cut(s) 60, 904, 907
BccI CCATC 6 cut(s) 65, 638, 745, 770, 800, 886
BceAI ACGGC 1 cut(s) 50
BcgI CGANNNNNNTGC 2 cut(s) 40, 74
BciT130I CCWGG 1 cut(s) 458
BciVI GTATCC 1 cut(s) 939
BcoDI GTCTC 1 cut(s) 384
BfmI CTRYAG 1 cut(s) 522
BfoI RGCGCY 1 cut(s) 66
BfuI GTATCC 1 cut(s) 939
BisI GCNGC 3 cut(s) 49, 918, 921
BlsI GCNGC 3 cut(s) 50, 919, 922
Bme1390I CCNGG 1 cut(s) 458
BmgT120I GGNCC 2 cut(s) 577, 578
BmiI GGNNCC 4 cut(s) 64, 579, 735, 897
BmrFI CCNGG 1 cut(s) 458
BmsI GCATC 2 cut(s) 317, 685
BpiI GAAGAC 3 cut(s) 14, 61, 197
BplI GAGNNNNNCTC 2 cut(s) 134, 166
BpmI CTGGAG 1 cut(s) 822
Bsa29I ATCGAT 2 cut(s) 17, 325
BsaAI YACGTR 1 cut(s) 787
BsaBI GATNNNNATC 1 cut(s) 108
BsaHI GRCGYC 2 cut(s) 11, 63
BsaJI CCNNGG 1 cut(s) 457
BsaWI WCCGGW 1 cut(s) 287
Bsc4I CCNNNNNNNGG 1 cut(s) 433
Bse118I RCCGGY 1 cut(s) 998
Bse1I ACTGG 2 cut(s) 138, 781
Bse3DI GCAATG 1 cut(s) 168
Bse8I GATNNNNATC 1 cut(s) 108
BseBI CCWGG 1 cut(s) 458
BseCI ATCGAT 2 cut(s) 17, 325
BseDI CCNNGG 1 cut(s) 457
BseGI GGATG 2 cut(s) 151, 1015
BseJI GATNNNNATC 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 433
BseMI GCAATG 1 cut(s) 168
BseMII CTCAG 1 cut(s) 978
BseNI ACTGG 2 cut(s) 138, 781
BseRI GAGGAG 1 cut(s) 888
BseSI GKGCMC 1 cut(s) 581
BseXI GCAGC 3 cut(s) 60, 904, 907
BshFI GGCC 5 cut(s) 56, 348, 494, 579, 780
BshNI GGYRCC 1 cut(s) 62
BshVI ATCGAT 2 cut(s) 17, 325
BsiHKAI GWGCWC 2 cut(s) 30, 993
BsiSI CCGG 2 cut(s) 288, 999
BslFI GGGAC 1 cut(s) 860
BslI CCNNNNNNNGG 1 cut(s) 433
BsmAI GTCTC 1 cut(s) 384
BsmFI GGGAC 1 cut(s) 860
BsnI GGCC 5 cut(s) 56, 348, 494, 579, 780
Bsp120I GGGCCC 1 cut(s) 577
Bsp1286I GDGCHC 4 cut(s) 30, 581, 898, 993
Bsp143I GATC 4 cut(s) 220, 415, 436, 967
BspACI CCGC 2 cut(s) 301, 838
BspANI GGCC 5 cut(s) 56, 348, 494, 579, 780
BspCNI CTCAG 1 cut(s) 979
BspDI ATCGAT 2 cut(s) 17, 325
BspLI GGNNCC 4 cut(s) 64, 579, 735, 897
BspPI GGATC 3 cut(s) 423, 444, 962
BspQI GCTCTTC 1 cut(s) 268
BspT107I GGYRCC 1 cut(s) 62
BsrDI GCAATG 1 cut(s) 168
BsrFI RCCGGY 1 cut(s) 998
BsrI ACTGG 2 cut(s) 138, 781
BssAI RCCGGY 1 cut(s) 998
BssECI CCNNGG 1 cut(s) 457
BssMI GATC 4 cut(s) 220, 415, 436, 967
BssNI GRCGYC 2 cut(s) 11, 63
Bst2UI CCWGG 1 cut(s) 458
Bst4CI ACNGT 5 cut(s) 43, 422, 490, 931, 976
Bst6I CTCTTC 1 cut(s) 268
BstACI GRCGYC 2 cut(s) 11, 63
BstBAI YACGTR 1 cut(s) 787
BstC8I GCNNGC 2 cut(s) 819, 853
BstDEI CTNAG 2 cut(s) 180, 987
BstF5I GGATG 2 cut(s) 151, 1015
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 2 cut(s) 48, 65
BstKTI GATC 4 cut(s) 223, 418, 439, 970
BstMAI GTCTC 1 cut(s) 384
BstMBI GATC 4 cut(s) 220, 415, 436, 967
BstMWI GCNNNNNNNGC 4 cut(s) 62, 645, 861, 914
BstNI CCWGG 1 cut(s) 458
BstNSI RCATGY 2 cut(s) 456, 821
BstSCI CCNGG 1 cut(s) 456
BstSFI CTRYAG 1 cut(s) 522
BstSLI GKGCMC 1 cut(s) 581
BstV1I GCAGC 3 cut(s) 60, 904, 907
BstV2I GAAGAC 3 cut(s) 14, 61, 197
BstX2I RGATCY 1 cut(s) 436
BstXI CCANNNNNNTGG 1 cut(s) 979
BstYI RGATCY 1 cut(s) 436
Bsu15I ATCGAT 2 cut(s) 17, 325
BsuI GTATCC 1 cut(s) 939
BsuRI GGCC 5 cut(s) 56, 348, 494, 579, 780
BsuTUI ATCGAT 2 cut(s) 17, 325
BtgZI GCGATG 1 cut(s) 730
BtsCI GGATG 2 cut(s) 151, 1015
BtsI GCAGTG 3 cut(s) 296, 646, 993
BtsIMutI CAGTG 8 cut(s) 145, 296, 427, 495, 646, 972, 984, 993
Cac8I GCNNGC 2 cut(s) 819, 853
CaiI CAGNNNCTG 1 cut(s) 800
CfoI GCGC 2 cut(s) 48, 65
Cfr10I RCCGGY 1 cut(s) 998
Cfr13I GGNCC 2 cut(s) 577, 578
ClaI ATCGAT 2 cut(s) 17, 325
CseI GACGC 1 cut(s) 912
Csp6I GTAC 1 cut(s) 784
CviAII CATG 7 cut(s) 52, 212, 400, 453, 730, 818, 882
CviQI GTAC 1 cut(s) 784
DdeI CTNAG 2 cut(s) 180, 987
DinI GGCGCC 1 cut(s) 64
DpnI GATC 4 cut(s) 222, 417, 438, 969
DpnII GATC 4 cut(s) 220, 415, 436, 967
EaeI YGGCCR 2 cut(s) 54, 778
Eam1104I CTCTTC 1 cut(s) 268
EarI CTCTTC 1 cut(s) 268
EciI GGCGGA 1 cut(s) 853
Ecl136II GAGCTC 2 cut(s) 28, 991
Eco24I GRGCYC 4 cut(s) 30, 581, 898, 993
Eco32I GATATC 1 cut(s) 628
Eco53kI GAGCTC 2 cut(s) 28, 991
Eco57I CTGAAG 2 cut(s) 209, 636
EcoICRI GAGCTC 2 cut(s) 28, 991
EcoO109I RGGNCCY 1 cut(s) 577
EcoRII CCWGG 1 cut(s) 456
EcoRV GATATC 1 cut(s) 628
EcoT38I GRGCYC 4 cut(s) 30, 581, 898, 993
EgeI GGCGCC 1 cut(s) 64
EheI GGCGCC 1 cut(s) 64
FaeI CATG 7 cut(s) 55, 215, 403, 456, 733, 821, 885
FalI AAGNNNNNCTT 2 cut(s) 111, 143
FaqI GGGAC 1 cut(s) 860
FatI CATG 7 cut(s) 51, 211, 399, 452, 729, 817, 881
FauNDI CATATG 1 cut(s) 227
FblI GTMKAC 2 cut(s) 481, 926
Fnu4HI GCNGC 3 cut(s) 49, 918, 921
FokI GGATG 2 cut(s) 158, 1002
FriOI GRGCYC 4 cut(s) 30, 581, 898, 993
Fsp4HI GCNGC 3 cut(s) 49, 918, 921
FspI TGCGCA 1 cut(s) 47
GlaI GCGC 2 cut(s) 47, 64
GluI GCNGC 3 cut(s) 49, 918, 921
GsuI CTGGAG 1 cut(s) 822
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 5 cut(s) 56, 348, 494, 579, 780
HapII CCGG 2 cut(s) 288, 999
HgaI GACGC 1 cut(s) 912
HhaI GCGC 2 cut(s) 48, 65
Hin1I GRCGYC 2 cut(s) 11, 63
Hin1II CATG 7 cut(s) 55, 215, 403, 456, 733, 821, 885
Hin6I GCGC 2 cut(s) 46, 63
HinP1I GCGC 2 cut(s) 46, 63
HincII GTYRAC 1 cut(s) 927
HindII GTYRAC 1 cut(s) 927
HinfI GANTC 8 cut(s) 149, 159, 281, 293, 557, 873, 956, 1007
HpaII CCGG 2 cut(s) 288, 999
HphI GGTGA 2 cut(s) 233, 928
Hpy166II GTNNAC 2 cut(s) 482, 927
Hpy188I TCNGA 2 cut(s) 76, 428
Hpy188III TCNNGA 4 cut(s) 267, 661, 692, 801
Hpy8I GTNNAC 2 cut(s) 482, 927
Hpy99I CGWCG 1 cut(s) 928
HpyAV CCTTC 3 cut(s) 341, 527, 1029
HpyCH4III ACNGT 5 cut(s) 43, 422, 490, 931, 976
HpyCH4IV ACGT 3 cut(s) 11, 590, 786
HpyCH4V TGCA 3 cut(s) 173, 704, 817
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 645, 861, 914
HpyF3I CTNAG 2 cut(s) 180, 987
HpySE526I ACGT 3 cut(s) 11, 590, 786
Hsp92I GRCGYC 2 cut(s) 11, 63
Hsp92II CATG 7 cut(s) 55, 215, 403, 456, 733, 821, 885
HspAI GCGC 2 cut(s) 46, 63
KasI GGCGCC 1 cut(s) 62
Kzo9I GATC 4 cut(s) 220, 415, 436, 967
LguI GCTCTTC 1 cut(s) 268
LmnI GCTCC 6 cut(s) 25, 215, 569, 663, 825, 901
Lsp1109I GCAGC 3 cut(s) 60, 904, 907
LweI GCATC 2 cut(s) 317, 685
MaeII ACGT 3 cut(s) 11, 590, 786
MaeIII GTNAC 2 cut(s) 130, 722
MalI GATC 4 cut(s) 222, 417, 438, 969
MboI GATC 4 cut(s) 220, 415, 436, 967
MboII GAAGA 8 cut(s) 19, 61, 100, 131, 202, 255, 431, 464
MflI RGATCY 1 cut(s) 436
MhlI GDGCHC 4 cut(s) 30, 581, 898, 993
MlsI TGGCCA 2 cut(s) 56, 780
MluCI AATT 4 cut(s) 360, 462, 632, 811
MluNI TGGCCA 2 cut(s) 56, 780
Mly113I GGCGCC 1 cut(s) 63
MlyI GAGTC 3 cut(s) 143, 153, 882
MnlI CCTC 4 cut(s) 136, 751, 838, 909
Mox20I TGGCCA 2 cut(s) 56, 780
MroXI GAANNNNTTC 1 cut(s) 364
MscI TGGCCA 2 cut(s) 56, 780
MseI TTAA 1 cut(s) 831
MslI CAYNNNNRTG 2 cut(s) 474, 977
Msp20I TGGCCA 2 cut(s) 56, 780
MspA1I CMGCKG 1 cut(s) 614
MspI CCGG 2 cut(s) 288, 999
MspR9I CCNGG 1 cut(s) 458
MvaI CCWGG 1 cut(s) 458
MwoI GCNNNNNNNGC 4 cut(s) 62, 645, 861, 914
NarI GGCGCC 1 cut(s) 63
NdeI CATATG 1 cut(s) 227
NdeII GATC 4 cut(s) 220, 415, 436, 967
NlaIII CATG 7 cut(s) 55, 215, 403, 456, 733, 821, 885
NlaIV GGNNCC 4 cut(s) 64, 579, 735, 897
NsbI TGCGCA 1 cut(s) 47
NspI RCATGY 2 cut(s) 456, 821
PaeI GCATGC 1 cut(s) 821
PciSI GCTCTTC 1 cut(s) 268
PdmI GAANNNNTTC 1 cut(s) 364
PfeI GAWTC 5 cut(s) 281, 293, 557, 956, 1007
PkrI GCNGC 3 cut(s) 50, 919, 922
PleI GAGTC 3 cut(s) 143, 153, 881
PluTI GGCGCC 1 cut(s) 66
PpsI GAGTC 3 cut(s) 143, 153, 881
Ppu21I YACGTR 1 cut(s) 787
Psp124BI GAGCTC 2 cut(s) 30, 993
Psp6I CCWGG 1 cut(s) 456
PspGI CCWGG 1 cut(s) 456
PspN4I GGNNCC 4 cut(s) 64, 579, 735, 897
PspOMI GGGCCC 1 cut(s) 577
PspPI GGNCC 2 cut(s) 577, 578
PstNI CAGNNNCTG 1 cut(s) 800
PsuI RGATCY 1 cut(s) 436
PvuII CAGCTG 1 cut(s) 614
RsaI GTAC 1 cut(s) 785
RsaNI GTAC 1 cut(s) 784
RseI CAYNNNNRTG 2 cut(s) 474, 977
SacI GAGCTC 2 cut(s) 30, 993
SalI GTCGAC 1 cut(s) 925
SapI GCTCTTC 1 cut(s) 268
SaqAI TTAA 1 cut(s) 831
SatI GCNGC 3 cut(s) 49, 918, 921
Sau3AI GATC 4 cut(s) 220, 415, 436, 967
Sau96I GGNCC 2 cut(s) 577, 578
SchI GAGTC 3 cut(s) 143, 153, 882
ScrFI CCNGG 1 cut(s) 458
SduI GDGCHC 4 cut(s) 30, 581, 898, 993
SfaNI GCATC 2 cut(s) 317, 685
SfcI CTRYAG 1 cut(s) 522
SfoI GGCGCC 1 cut(s) 64
SmiMI CAYNNNNRTG 2 cut(s) 474, 977
SphI GCATGC 1 cut(s) 821
Sse9I AATT 4 cut(s) 360, 462, 632, 811
SsiI CCGC 2 cut(s) 301, 838
SspDI GGCGCC 1 cut(s) 62
SstI GAGCTC 2 cut(s) 30, 993
StyD4I CCNGG 1 cut(s) 456
TaaI ACNGT 5 cut(s) 43, 422, 490, 931, 976
TaiI ACGT 3 cut(s) 14, 593, 789
TaqI TCGA 6 cut(s) 17, 30, 102, 112, 325, 926
TaqII GACCGA 1 cut(s) 499
TasI AATT 4 cut(s) 360, 462, 632, 811
TfiI GAWTC 5 cut(s) 281, 293, 557, 956, 1007
Tru1I TTAA 1 cut(s) 831
Tru9I TTAA 1 cut(s) 831
TscAI CASTG 8 cut(s) 145, 303, 427, 495, 646, 979, 991, 1000
TseI GCWGC 3 cut(s) 48, 917, 920
TspDTI ATGAA 4 cut(s) 20, 98, 388, 399
TspGWI ACGGA 1 cut(s) 38
TspRI CASTG 8 cut(s) 145, 303, 427, 495, 646, 979, 991, 1000
XapI RAATTY 3 cut(s) 462, 632, 811
XceI RCATGY 2 cut(s) 456, 821
XmiI GTMKAC 2 cut(s) 481, 926
XmnI GAANNNNTTC 1 cut(s) 364
ZraI GACGTC 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.