Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Reverse (-)

32434147 .. 32436258

Gene Structure 2112 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1239100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGGGAGATTCCCACCACCACCACCTCAACAACCACCAAGCAACCACGTCGTCTCGCCTGGGGATAAGGCCGCCGTCATCCGGCGGAGGAGTCAGCACCGACATCGTGGAGGTGGTACGAGGCAGCCACATTGTCCGGGCGACGGGCCGGAAAGACAGGCACAGCAAGGTTTGCACGGCAAAAGGCCCGAGGGACCGCCGCGTCCGGCTCGCCGCTCACACCGCCATTCAGTTCTACGACGTCCAGGACCGGCTTGGGTATGACCGACCCAGCAAGGCCGTCGATTGGCTAATCAAGAAGGCCAAGGCCGCCATAGACGAGCTCGAGGAGCTTCCCTCATGGAACCCACATTCGATTTCGACCACCGCGGCTGTTCCAGCCATGGAGACCCAGAACCCGTCCGCCACCGGCATCCACTGCTTCGCGGCAGTGGACGCAATTGGGTCTGCTAATCGAAGAACAATGGTGGGGAGTGGAGTTTCGGAGCAGCAATTTGCTCAGAGCCCAAATAGCAACTCGACTTTCCTCCCACCGTCGCTCGACTCGGACGCCATTGCAGACACCATCAAGTCCTTTTTCCCAATGGGTGCTTCCGCGGCAGCAGCTGCCGCCGAGTCTCCATCGTCGACGATACAGTTCCATCAGAACTACCCACCTGATTTGCTCTCTAAAGCCAGCAGCCAGAGCCAAGATCTGCGCCTCTCCCTGCAGTCCTTCCAAGACCCAATTCTCCTCCACCACCACGACGCCCAAAATCAGCACCACCACGCTCAGACCCATCAAAACGAGCAAACCCTTTTCTCCGGATCCCAAAACCAGCTCGGGTTTGATGGGTCCCCCGGCTCGTGGGCAGAGCATCACCACAACCAACAACAGCAAGAGATGAACAGATTCCAGAGAATGGTGGCTTGGGACAGCGGTGGTAACGGCGGACCATCGTCGGCAGGCGGGTTTATATTCAATTCGCTGCTACCAACACAGCAGGGTAGTACTAGTCCTTTGCAACAGCAGCAGCCGTCGTTGTTCGGCCAAAGTCAGTTCTTTTCTCAGAGGGGACCCCTTCAGTCCAGTAACTCGCCGTCAGTTCGTGCTTGGATGGTGGACCAGCAAAACCAACAATCCATTTCTCACGACCATCATCATCAAATCTCGCAATCCATTCATCACCAACAGTCCATTTCCGGCATGGGATTCGCCTCCGGAGGCGGATTCTCCGGGTTCCACATCCCGGCACGAATTCACGGCGAGGAGGAGCACGACGGTACTTCCGACAAGCCGTCCTCTGCTTCCTCCAATTCTCGCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

436

Amino Acids

47.18

Weight (kDa)

6.68

Isoelectric Point (pI)

58.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	49 - 173	7.7e-29	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	200
AatII	GACGTC	1 cut(s)	243
AccB7I	CCANNNNNTGG	1 cut(s)	901
AccBSI	CCGCTC	1 cut(s)	215
AccI	GTMKAC	1 cut(s)	626
AccII	CGCG	4 cut(s)	201, 368, 425, 596
AccIII	TCCGGA	2 cut(s)	803, 1199
AclWI	GGATC	2 cut(s)	801, 814
AcoI	YGGCCR	1 cut(s)	1027
AcsI	RAATTY	1 cut(s)	1236
AcuI	CTGAAG	1 cut(s)	1046
AcyI	GRCGYC	3 cut(s)	240, 549, 747
AfaI	GTAC	3 cut(s)	117, 991, 1264
AfiI	CCNNNNNNNGG	6 cut(s)	80, 142, 285, 846, 901, 1228
AgsI	TTSAA	1 cut(s)	961
AhdI	GACNNNNNGTC	1 cut(s)	1276
AhlI	ACTAGT	1 cut(s)	992
AjiI	CACGTC	1 cut(s)	48
AjnI	CCWGG	2 cut(s)	57, 243
AjuI	GAANNNNNNNTTGG	6 cut(s)	574, 606, 711, 743, 892, 924
AluBI	AGCT	4 cut(s)	322, 331, 605, 820
AluI	AGCT	4 cut(s)	322, 331, 605, 820
Alw21I	GWGCWC	2 cut(s)	324, 1257
Alw26I	GTCTC	3 cut(s)	57, 380, 621
AlwI	GGATC	2 cut(s)	801, 814
AlwNI	CAGNNNCTG	1 cut(s)	605
Ama87I	CYCGRG	3 cut(s)	187, 323, 821
Aor13HI	TCCGGA	2 cut(s)	803, 1199
AoxI	GGCC	7 cut(s)	68, 145, 184, 276, 300, 306, 1027
ApeKI	GCWGC	9 cut(s)	123, 487, 599, 602, 605, 678, 967, 1009, 1012
ApoI	RAATTY	1 cut(s)	1236
Asp700I	GAANNNNTTC	1 cut(s)	890
AspLEI	GCGC	1 cut(s)	699
AspS9I	GGNCC	8 cut(s)	145, 185, 193, 247, 834, 932, 1055, 1102
AsuC2I	CCSGG	4 cut(s)	137, 840, 1216, 1229
AsuHPI	GGTGA	2 cut(s)	851, 1157
AvaI	CYCGRG	3 cut(s)	187, 323, 821
AvaII	GGWCC	6 cut(s)	193, 247, 834, 932, 1055, 1102
BamHI	GGATCC	1 cut(s)	806
BanII	GRGCYC	2 cut(s)	324, 506
BauI	CACGAG	1 cut(s)	844
Bbv12I	GWGCWC	2 cut(s)	324, 1257
BbvI	GCAGC	9 cut(s)	135, 499, 592, 611, 614, 690, 954, 1021, 1024
BccI	CCATC	8 cut(s)	572, 628, 648, 786, 824, 943, 1090, 1143
BceAI	ACGGC	8 cut(s)	58, 192, 263, 943, 1000, 1063, 1258, 1261
BcgI	CGANNNNNNTGC	8 cut(s)	30, 64, 85, 119, 262, 296, 1174, 1208
BciT130I	CCWGG	2 cut(s)	59, 245
BcnI	CCSGG	4 cut(s)	137, 840, 1216, 1229
BcoDI	GTCTC	3 cut(s)	57, 380, 621
BcuI	ACTAGT	1 cut(s)	992
BfaI	CTAG	1 cut(s)	993
BfmI	CTRYAG	1 cut(s)	707
BglII	AGATCT	1 cut(s)	691
BmcAI	AGTACT	1 cut(s)	991
Bme1390I	CCNGG	6 cut(s)	59, 137, 245, 840, 1216, 1229
Bme18I	GGWCC	6 cut(s)	193, 247, 834, 932, 1055, 1102
BmeRI	GACNNNNNGTC	1 cut(s)	1276
BmeT110I	CYCGRG	3 cut(s)	187, 323, 821
BmgBI	CACGTC	1 cut(s)	48
BmgT120I	GGNCC	8 cut(s)	145, 185, 193, 247, 834, 932, 1055, 1102
BmiI	GGNNCC	8 cut(s)	194, 344, 808, 835, 836, 1056, 1057, 1220
BmrFI	CCNGG	6 cut(s)	59, 137, 245, 840, 1216, 1229
BmsI	GCATC	2 cut(s)	420, 865
BoxI	GACNNNNGTC	1 cut(s)	937
BplI	GAGNNNNNCTC	2 cut(s)	320, 352
BpuMI	CCSGG	4 cut(s)	137, 840, 1216, 1229
BsaHI	GRCGYC	3 cut(s)	240, 549, 747
BsaI	GGTCTC	1 cut(s)	380
BsaJI	CCNNGG	7 cut(s)	58, 188, 303, 366, 381, 594, 838
BsaWI	WCCGGW	2 cut(s)	803, 1199
Bsc4I	CCNNNNNNNGG	6 cut(s)	80, 142, 285, 846, 901, 1228
Bse118I	RCCGGY	2 cut(s)	249, 407
Bse1I	ACTGG	1 cut(s)	1068
Bse3DI	GCAATG	1 cut(s)	552
BseAI	TCCGGA	2 cut(s)	803, 1199
BseBI	CCWGG	2 cut(s)	59, 245
BseDI	CCNNGG	7 cut(s)	58, 188, 303, 366, 381, 594, 838
BseGI	GGATG	4 cut(s)	77, 411, 1101, 1224
BseLI	CCNNNNNNNGG	6 cut(s)	80, 142, 285, 846, 901, 1228
BseMI	GCAATG	1 cut(s)	552
BseMII	CTCAG	3 cut(s)	512, 785, 1061
BseNI	ACTGG	1 cut(s)	1068
BseRI	GAGGAG	5 cut(s)	102, 341, 722, 1262, 1265
BseXI	GCAGC	9 cut(s)	135, 499, 592, 611, 614, 690, 954, 1021, 1024
BseYI	CCCAGC	1 cut(s)	269
Bsh1236I	CGCG	4 cut(s)	201, 368, 425, 596
BshFI	GGCC	7 cut(s)	70, 147, 186, 278, 302, 308, 1029
BsiHKAI	GWGCWC	2 cut(s)	324, 1257
BsiHKCI	CYCGRG	3 cut(s)	187, 323, 821
BslFI	GGGAC	4 cut(s)	206, 820, 926, 1068
BslI	CCNNNNNNNGG	6 cut(s)	80, 142, 285, 846, 901, 1228
BsmAI	GTCTC	3 cut(s)	57, 380, 621
BsmBI	CGTCTC	1 cut(s)	57
BsmFI	GGGAC	4 cut(s)	206, 820, 926, 1068
BsnI	GGCC	7 cut(s)	70, 147, 186, 278, 302, 308, 1029
Bso31I	GGTCTC	1 cut(s)	380
BsoBI	CYCGRG	3 cut(s)	187, 323, 821
Bsp1286I	GDGCHC	3 cut(s)	324, 506, 1257
Bsp13I	TCCGGA	2 cut(s)	803, 1199
Bsp143I	GATC	2 cut(s)	691, 806
Bsp19I	CCATGG	1 cut(s)	381
BspANI	GGCC	7 cut(s)	70, 147, 186, 278, 302, 308, 1029
BspCNI	CTCAG	3 cut(s)	511, 784, 1060
BspEI	TCCGGA	2 cut(s)	803, 1199
BspFNI	CGCG	4 cut(s)	201, 368, 425, 596
BspLI	GGNNCC	8 cut(s)	194, 344, 808, 835, 836, 1056, 1057, 1220
BspMAI	CTGCAG	1 cut(s)	711
BspPI	GGATC	2 cut(s)	801, 814
BspTNI	GGTCTC	1 cut(s)	380
BsrBI	CCGCTC	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	552
BsrFI	RCCGGY	2 cut(s)	249, 407
BsrI	ACTGG	1 cut(s)	1068
BssAI	RCCGGY	2 cut(s)	249, 407
BssECI	CCNNGG	7 cut(s)	58, 188, 303, 366, 381, 594, 838
BssMI	GATC	2 cut(s)	691, 806
BssNI	GRCGYC	3 cut(s)	240, 549, 747
BssSI	CACGAG	1 cut(s)	844
BssT1I	CCWWGG	2 cut(s)	303, 381
Bst2BI	CACGAG	1 cut(s)	844
Bst2UI	CCWGG	2 cut(s)	59, 245
Bst4CI	ACNGT	4 cut(s)	534, 636, 1173, 1262
BstACI	GRCGYC	3 cut(s)	240, 549, 747
BstAPI	GCANNNNNTGC	3 cut(s)	171, 417, 605
BstC8I	GCNNGC	3 cut(s)	210, 676, 946
BstDEI	CTNAG	3 cut(s)	498, 771, 1047
BstDSI	CCRYGG	3 cut(s)	366, 381, 594
BstF5I	GGATG	4 cut(s)	77, 411, 1101, 1224
BstFNI	CGCG	4 cut(s)	201, 368, 425, 596
BstHHI	GCGC	1 cut(s)	699
BstKTI	GATC	2 cut(s)	694, 809
BstMAI	GTCTC	3 cut(s)	57, 380, 621
BstMBI	GATC	2 cut(s)	691, 806
BstNI	CCWGG	2 cut(s)	59, 245
BstPAI	GACNNNNGTC	1 cut(s)	937
BstSCI	CCNGG	6 cut(s)	57, 135, 243, 838, 1214, 1227
BstSFI	CTRYAG	1 cut(s)	707
BstUI	CGCG	4 cut(s)	201, 368, 425, 596
BstV1I	GCAGC	9 cut(s)	135, 499, 592, 611, 614, 690, 954, 1021, 1024
BstX2I	RGATCY	2 cut(s)	691, 806
BstYI	RGATCY	2 cut(s)	691, 806
BsuRI	GGCC	7 cut(s)	70, 147, 186, 278, 302, 308, 1029
BtgI	CCRYGG	3 cut(s)	366, 381, 594
BtrI	CACGTC	1 cut(s)	48
BtsCI	GGATG	4 cut(s)	77, 411, 1101, 1224
BtsI	GCAGTG	2 cut(s)	415, 435
BtsIMutI	CAGTG	2 cut(s)	415, 435
Cac8I	GCNNGC	3 cut(s)	210, 676, 946
CaiI	CAGNNNCTG	1 cut(s)	605
CfoI	GCGC	1 cut(s)	699
Cfr10I	RCCGGY	2 cut(s)	249, 407
Cfr13I	GGNCC	8 cut(s)	145, 185, 193, 247, 834, 932, 1055, 1102
Cfr42I	CCGCGG	2 cut(s)	369, 597
CseI	GACGC	4 cut(s)	190, 443, 557, 755
Csp6I	GTAC	3 cut(s)	116, 990, 1263
CspCI	CAANNNNNGTGG	2 cut(s)	642, 677
CviAII	CATG	3 cut(s)	339, 382, 1186
CviQI	GTAC	3 cut(s)	116, 990, 1263
DdeI	CTNAG	3 cut(s)	498, 771, 1047
DpnI	GATC	2 cut(s)	693, 808
DpnII	GATC	2 cut(s)	691, 806
DrdI	GACNNNNNNGTC	1 cut(s)	200
DriI	GACNNNNNGTC	1 cut(s)	1276
DseDI	GACNNNNNNGTC	1 cut(s)	200
EaeI	YGGCCR	1 cut(s)	1027
Eam1105I	GACNNNNNGTC	1 cut(s)	1276
EciI	GGCGGA	4 cut(s)	99, 391, 945, 1221
Ecl136II	GAGCTC	1 cut(s)	322
Eco130I	CCWWGG	2 cut(s)	303, 381
Eco24I	GRGCYC	2 cut(s)	324, 506
Eco31I	GGTCTC	1 cut(s)	380
Eco47I	GGWCC	6 cut(s)	193, 247, 834, 932, 1055, 1102
Eco53kI	GAGCTC	1 cut(s)	322
Eco57I	CTGAAG	1 cut(s)	1046
Eco88I	CYCGRG	3 cut(s)	187, 323, 821
EcoICRI	GAGCTC	1 cut(s)	322
EcoO109I	RGGNCCY	2 cut(s)	834, 1055
EcoRI	GAATTC	1 cut(s)	1236
EcoRII	CCWGG	2 cut(s)	57, 243
EcoT14I	CCWWGG	2 cut(s)	303, 381
EcoT38I	GRGCYC	2 cut(s)	324, 506
ErhI	CCWWGG	2 cut(s)	303, 381
Esp3I	CGTCTC	1 cut(s)	57
FaeI	CATG	3 cut(s)	342, 385, 1189
FaiI	YATR	6 cut(s)	261, 314, 340, 383, 956, 1187
FaqI	GGGAC	4 cut(s)	206, 820, 926, 1068
FatI	CATG	3 cut(s)	338, 381, 1185
FauI	CCCGC	1 cut(s)	941
FblI	GTMKAC	1 cut(s)	626
FokI	GGATG	4 cut(s)	64, 398, 1108, 1211
FriOI	GRGCYC	2 cut(s)	324, 506
FspBI	CTAG	1 cut(s)	993
GlaI	GCGC	1 cut(s)	698
GsaI	CCCAGC	1 cut(s)	273
HaeIII	GGCC	7 cut(s)	70, 147, 186, 278, 302, 308, 1029
HgaI	GACGC	4 cut(s)	190, 443, 557, 755
HhaI	GCGC	1 cut(s)	699
Hin1I	GRCGYC	3 cut(s)	240, 549, 747
Hin1II	CATG	3 cut(s)	342, 385, 1189
Hin6I	GCGC	1 cut(s)	697
HinP1I	GCGC	1 cut(s)	697
HincII	GTYRAC	1 cut(s)	627
HindII	GTYRAC	1 cut(s)	627
HinfI	GANTC	7 cut(s)	8, 90, 542, 614, 891, 1191, 1209
HphI	GGTGA	2 cut(s)	851, 1157
Hpy166II	GTNNAC	3 cut(s)	433, 627, 1102
Hpy188I	TCNGA	7 cut(s)	484, 501, 547, 645, 774, 1050, 1270
Hpy188III	TCNNGA	5 cut(s)	295, 804, 895, 1130, 1200
Hpy8I	GTNNAC	3 cut(s)	433, 627, 1102
HpyAV	CCTTC	3 cut(s)	292, 724, 1070
HpyCH4III	ACNGT	4 cut(s)	534, 636, 1173, 1262
HpyCH4IV	ACGT	2 cut(s)	47, 240
HpyCH4V	TGCA	4 cut(s)	174, 557, 709, 1003
HpyF3I	CTNAG	3 cut(s)	498, 771, 1047
HpySE526I	ACGT	2 cut(s)	47, 240
Hsp92I	GRCGYC	3 cut(s)	240, 549, 747
Hsp92II	CATG	3 cut(s)	342, 385, 1189
HspAI	GCGC	1 cut(s)	697
KflI	GGGWCCC	2 cut(s)	834, 1055
Kpn2I	TCCGGA	2 cut(s)	803, 1199
KspI	CCGCGG	2 cut(s)	369, 597
Kzo9I	GATC	2 cut(s)	691, 806
LmnI	GCTCC	3 cut(s)	328, 484, 1252
Lsp1109I	GCAGC	9 cut(s)	135, 499, 592, 611, 614, 690, 954, 1021, 1024
LweI	GCATC	2 cut(s)	420, 865
MaeI	CTAG	1 cut(s)	993
MaeII	ACGT	2 cut(s)	47, 240
MaeIII	GTNAC	2 cut(s)	923, 1070
MalI	GATC	2 cut(s)	693, 808
MbiI	CCGCTC	1 cut(s)	215
MboI	GATC	2 cut(s)	691, 806
MboII	GAAGA	1 cut(s)	468
MfeI	CAATTG	1 cut(s)	438
MflI	RGATCY	2 cut(s)	691, 806
MhlI	GDGCHC	3 cut(s)	324, 506, 1257
MluCI	AATT	6 cut(s)	438, 491, 726, 961, 1236, 1294
MlyI	GAGTC	3 cut(s)	99, 536, 623
MmeI	TCCRAC	1 cut(s)	1293
MroI	TCCGGA	2 cut(s)	803, 1199
MroXI	GAANNNNTTC	1 cut(s)	890
MspA1I	CMGCKG	4 cut(s)	368, 596, 605, 918
MspR9I	CCNGG	6 cut(s)	59, 137, 245, 840, 1216, 1229
MunI	CAATTG	1 cut(s)	438
MvaI	CCWGG	2 cut(s)	59, 245
MvnI	CGCG	4 cut(s)	201, 368, 425, 596
NciI	CCSGG	4 cut(s)	137, 840, 1216, 1229
NcoI	CCATGG	1 cut(s)	381
NdeII	GATC	2 cut(s)	691, 806
NlaIII	CATG	3 cut(s)	342, 385, 1189
NlaIV	GGNNCC	8 cut(s)	194, 344, 808, 835, 836, 1056, 1057, 1220
NmeAIII	GCCGAG	1 cut(s)	637
PaeR7I	CTCGAG	1 cut(s)	323
PcsI	WCGNNNNNNNCGW	1 cut(s)	1266
PdmI	GAANNNNTTC	1 cut(s)	890
PfeI	GAWTC	4 cut(s)	8, 891, 1191, 1209
PflMI	CCANNNNNTGG	1 cut(s)	901
PfoI	TCCNGGA	1 cut(s)	243
PleI	GAGTC	3 cut(s)	98, 536, 622
PpsI	GAGTC	3 cut(s)	98, 536, 622
PpuMI	RGGWCCY	2 cut(s)	834, 1055
PshAI	GACNNNNGTC	1 cut(s)	937
Psp124BI	GAGCTC	1 cut(s)	324
Psp5II	RGGWCCY	2 cut(s)	834, 1055
Psp6I	CCWGG	2 cut(s)	57, 243
PspFI	CCCAGC	1 cut(s)	269
PspGI	CCWGG	2 cut(s)	57, 243
PspN4I	GGNNCC	8 cut(s)	194, 344, 808, 835, 836, 1056, 1057, 1220
PspPI	GGNCC	8 cut(s)	145, 185, 193, 247, 834, 932, 1055, 1102
PspPPI	RGGWCCY	2 cut(s)	834, 1055
PspXI	VCTCGAGB	1 cut(s)	323
PstI	CTGCAG	1 cut(s)	711
PstNI	CAGNNNCTG	1 cut(s)	605
PsuI	RGATCY	2 cut(s)	691, 806
PvuII	CAGCTG	1 cut(s)	605
RsaI	GTAC	3 cut(s)	117, 991, 1264
RsaNI	GTAC	3 cut(s)	116, 990, 1263
SacI	GAGCTC	1 cut(s)	324
SacII	CCGCGG	2 cut(s)	369, 597
SalI	GTCGAC	1 cut(s)	625
Sau3AI	GATC	2 cut(s)	691, 806
Sau96I	GGNCC	8 cut(s)	145, 185, 193, 247, 834, 932, 1055, 1102
ScaI	AGTACT	1 cut(s)	991
SchI	GAGTC	3 cut(s)	99, 536, 623
ScrFI	CCNGG	6 cut(s)	59, 137, 245, 840, 1216, 1229
SduI	GDGCHC	3 cut(s)	324, 506, 1257
SfaNI	GCATC	2 cut(s)	420, 865
SfcI	CTRYAG	1 cut(s)	707
Sfr274I	CTCGAG	1 cut(s)	323
Sfr303I	CCGCGG	2 cut(s)	369, 597
SgrBI	CCGCGG	2 cut(s)	369, 597
SgrDI	CGTCGACG	1 cut(s)	625
SinI	GGWCC	6 cut(s)	193, 247, 834, 932, 1055, 1102
SlaI	CTCGAG	1 cut(s)	323
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
SpeI	ACTAGT	1 cut(s)	992
Sse9I	AATT	6 cut(s)	438, 491, 726, 961, 1236, 1294
SspMI	CTAG	1 cut(s)	993
SstI	GAGCTC	1 cut(s)	324
StyD4I	CCNGG	6 cut(s)	57, 135, 243, 838, 1214, 1227
StyI	CCWWGG	2 cut(s)	303, 381
TaaI	ACNGT	4 cut(s)	534, 636, 1173, 1262
TaiI	ACGT	2 cut(s)	50, 243
TaqI	TCGA	8 cut(s)	282, 324, 353, 359, 454, 518, 540, 626
TaqII	GACCGA	1 cut(s)	279
TasI	AATT	6 cut(s)	438, 491, 726, 961, 1236, 1294
TatI	WGTACW	1 cut(s)	989
TauI	GCSGC	8 cut(s)	73, 201, 215, 311, 371, 428, 599, 611
TfiI	GAWTC	4 cut(s)	8, 891, 1191, 1209
TscAI	CASTG	2 cut(s)	422, 435
TseI	GCWGC	9 cut(s)	123, 487, 599, 602, 605, 678, 967, 1009, 1012
TspDTI	ATGAA	2 cut(s)	899, 1151
TspRI	CASTG	2 cut(s)	422, 435
Van91I	CCANNNNNTGG	1 cut(s)	901
VpaK11BI	GGWCC	6 cut(s)	193, 247, 834, 932, 1055, 1102
XapI	RAATTY	1 cut(s)	1236
XcmI	CCANNNNNNNNNTGG	2 cut(s)	251, 1183
XhoI	CTCGAG	1 cut(s)	323
XmiI	GTMKAC	1 cut(s)	626
XmnI	GAANNNNTTC	1 cut(s)	890
XspI	CTAG	1 cut(s)	993
ZraI	GACGTC	1 cut(s)	241
ZrmI	AGTACT	1 cut(s)	991

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.