Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Forward (+)

51944665 .. 51946469

Gene Structure 1805 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0407100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGGTTTAGCTTCACATGGGAGAAACCTTGCATTTCAGATTGGTAATCCAAAATCAAGGCTTTTGATTCGGGTCCACTACTGCAGTTATAAATCAGAGAGTAAAAAACAAGAGGATGATGAAACAGTGAGGGAATTCTGTACCATTCTGAAGCGAAGCAGAGAGTGGGAGTCCGTGTTGAGCTCATCAGGGTTTCCCAAGAAGCTAAACCCTTGTGTGGTTCGATCCGTTCTTCAACAACACCACCAGGTTGGTGACCCAGAAAGACTTTTAAGTTTCTTTGATTGGTCTGGTGCCCAATTGGGTGTGCTCCCAAATTTGCATTCTTTTTCGATTATGGCTGTTGTTTTGTGTAATTCCAAGCTTTTTGGGCATGCCCATGGTGTGTTGGAGAGAATGGTTAGGACCCGGAAGCCGGCTTTAGAAGTTTTGGATTGTGTTGTTAGGTGTTTTAGAGAGTTTGAGGGGTCTGATATGGTGGTTTTTGAGATTTTGATTACTGTGTTTACGATGGGGGGTTGGTTTTATGAGGCTGCTGATGTGTTTTTGGGTGTTAGGAGTGTTGGGATTTCGCCGAGATTGGAATGCTGTAATTCTCTGTTGAATGAGTTGTTGAAGGGTAATAGGATGAGGCTGTTCTGGAAAGTGTATGATGGGATGTTAGAGGCTAAGATTGAGCTGGATTTTTACACTTATAGCAATGTGATCAACGCACTTTGTAAGTTTGGGGATGTTAGGCAGGGTAAGAGGCTACTGTTTGAGATGGTAGAGAAGGGCTGTAATCCGAATTTGAGTACCTTCAATGTGGTGATTGATGGATTGTGTAGAAGTAGGGCTGTTCATGAAGCCATTGAGTTGAAAAAATCGATGGTTGAGAAGGGATTGACACCTGATAGGTATACATATTCAATACTAATTGATGGATTGTGCAGACAGAAGAGATCAGAAGAAGCAAAGTTGGTATTGAACGAGATGTATGATATAGGTTTGAATCCTGACCGCACCTTGTACATTGCTTTGATTGATGGATTCTTGAAAGAAAATAACGTGGATAAGGCCCTTAGGATCAAAGAAGAGATGGTCGCTCGAGGAGTTAAGTTGTGCGGTGTCACATATAATGTGATTTTTGCAGGGATCTGTAAAATAGGTAAGATGGAGAAGGCAGAATCTCTTTTGAATGAGATGAATGCTATGGGAATTGAACCTAATACCCAGACATATAACTATTTAATTGATGGGTACTGTCGGGAGCAAAATGTAAACAAGGCTTATGCATTACTTAATGAGATGAAGCAAAGGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

434

Amino Acids

49.5

Weight (kDa)

8.51

Isoelectric Point (pI)

34.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	196 - 241	4.2e-09	PPR repeat family
PPR_long	PF17177	198 - 306	9.6e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	217 - 272	2.3e-07	Pentatricopeptide repeat domain
PPR	PF01535	230 - 260	2.5e-06	PPR repeat
PPR_2	PF13041	232 - 276	1.2e-11	PPR repeat family
PPR_1	PF12854	258 - 291	3.9e-09	PPR repeat
PPR_2	PF13041	264 - 311	7.7e-17	PPR repeat family
PPR_1	PF12854	293 - 325	1.1e-10	PPR repeat
PPR	PF01535	300 - 329	9.8e-06	PPR repeat
PPR_3	PF13812	355 - 414	9.2e-11	Pentatricopeptide repeat domain
PPR_2	PF13041	370 - 416	4.2e-17	PPR repeat family
PPR	PF01535	370 - 400	5e-06	PPR repeat
PPR_1	PF12854	398 - 431	1.2e-12	PPR repeat
PPR_2	PF13041	406 - 433	7.2e-08	PPR repeat family
PPR	PF01535	406 - 433	1.3e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	90
AccB1I	GGYRCC	1 cut(s)	293
AccI	GTMKAC	1 cut(s)	899
AciI	CCGC	2 cut(s)	1000, 1104
AclWI	GGATC	3 cut(s)	219, 1073, 1142
AcsI	RAATTY	3 cut(s)	134, 316, 787
AcuI	CTGAAG	1 cut(s)	170
AfaI	GTAC	4 cut(s)	142, 796, 1010, 1241
AfiI	CCNNNNNNNGG	2 cut(s)	217, 415
AjnI	CCWGG	1 cut(s)	246
AjuI	GAANNNNNNNTTGG	2 cut(s)	307, 339
AluBI	AGCT	5 cut(s)	11, 183, 205, 364, 679
AluI	AGCT	5 cut(s)	11, 183, 205, 364, 679
Alw21I	GWGCWC	2 cut(s)	185, 312
AlwI	GGATC	3 cut(s)	219, 1073, 1142
Ama87I	CYCGRG	1 cut(s)	1086
AoxI	GGCC	1 cut(s)	1056
ApeKI	GCWGC	1 cut(s)	533
ApoI	RAATTY	3 cut(s)	134, 316, 787
AspS9I	GGNCC	3 cut(s)	73, 405, 1057
AsuC2I	CCSGG	1 cut(s)	409
AsuHPI	GGTGA	2 cut(s)	266, 820
AvaI	CYCGRG	1 cut(s)	1086
AvaII	GGWCC	2 cut(s)	73, 405
AxyI	CCTNAGG	1 cut(s)	1061
BaeGI	GKGCMC	1 cut(s)	298
BanI	GGYRCC	1 cut(s)	293
BanII	GRGCYC	1 cut(s)	185
Bbv12I	GWGCWC	2 cut(s)	185, 312
BbvI	GCAGC	1 cut(s)	520
BciT130I	CCWGG	1 cut(s)	248
BclI	TGATCA	1 cut(s)	705
BcnI	CCSGG	1 cut(s)	409
BfmI	CTRYAG	1 cut(s)	82
BisI	GCNGC	1 cut(s)	534
BlsI	GCNGC	1 cut(s)	535
Bme1390I	CCNGG	2 cut(s)	248, 409
Bme18I	GGWCC	2 cut(s)	73, 405
BmeT110I	CYCGRG	1 cut(s)	1086
BmgT120I	GGNCC	3 cut(s)	73, 405, 1057
BmiI	GGNNCC	3 cut(s)	74, 295, 407
BmrFI	CCNGG	2 cut(s)	248, 409
BpuMI	CCSGG	1 cut(s)	409
Bsa29I	ATCGAT	1 cut(s)	866
BsaJI	CCNNGG	1 cut(s)	379
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 415
Bse118I	RCCGGY	1 cut(s)	415
Bse21I	CCTNAGG	1 cut(s)	1061
Bse3DI	GCAATG	2 cut(s)	706, 1011
BseBI	CCWGG	1 cut(s)	248
BseCI	ATCGAT	1 cut(s)	866
BseDI	CCNNGG	1 cut(s)	379
BseGI	GGATG	4 cut(s)	121, 633, 663, 736
BseLI	CCNNNNNNNGG	2 cut(s)	217, 415
BseMI	GCAATG	2 cut(s)	706, 1011
BseRI	GAGGAG	1 cut(s)	1104
BseSI	GKGCMC	1 cut(s)	298
BseXI	GCAGC	1 cut(s)	520
BsgI	GTGCAG	1 cut(s)	949
BshFI	GGCC	1 cut(s)	1058
BshNI	GGYRCC	1 cut(s)	293
BshVI	ATCGAT	1 cut(s)	866
BsiHKAI	GWGCWC	2 cut(s)	185, 312
BsiHKCI	CYCGRG	1 cut(s)	1086
BsiSI	CCGG	2 cut(s)	409, 416
BslI	CCNNNNNNNGG	2 cut(s)	217, 415
BsmI	GAATGC	3 cut(s)	322, 590, 1192
BsnI	GGCC	1 cut(s)	1058
BsoBI	CYCGRG	1 cut(s)	1086
Bsp1286I	GDGCHC	3 cut(s)	185, 298, 312
Bsp1407I	TGTACA	1 cut(s)	1008
Bsp143I	GATC	5 cut(s)	224, 705, 941, 1065, 1134
Bsp19I	CCATGG	1 cut(s)	379
BspACI	CCGC	2 cut(s)	1000, 1104
BspANI	GGCC	1 cut(s)	1058
BspDI	ATCGAT	1 cut(s)	866
BspHI	TCATGA	1 cut(s)	841
BspLI	GGNNCC	3 cut(s)	74, 295, 407
BspMAI	CTGCAG	1 cut(s)	86
BspPI	GGATC	3 cut(s)	219, 1073, 1142
BspT107I	GGYRCC	1 cut(s)	293
BsrDI	GCAATG	2 cut(s)	706, 1011
BsrFI	RCCGGY	1 cut(s)	415
BsrGI	TGTACA	1 cut(s)	1008
BssAI	RCCGGY	1 cut(s)	415
BssECI	CCNNGG	1 cut(s)	379
BssMI	GATC	5 cut(s)	224, 705, 941, 1065, 1134
BssNAI	GTATAC	1 cut(s)	900
BssT1I	CCWWGG	1 cut(s)	379
Bst1107I	GTATAC	1 cut(s)	900
Bst2UI	CCWGG	1 cut(s)	248
Bst4CI	ACNGT	4 cut(s)	127, 502, 756, 1244
Bst6I	CTCTTC	2 cut(s)	932, 1068
BstAUI	TGTACA	1 cut(s)	1008
BstC8I	GCNNGC	2 cut(s)	375, 417
BstDEI	CTNAG	2 cut(s)	669, 1061
BstDSI	CCRYGG	1 cut(s)	379
BstEII	GGTNACC	1 cut(s)	254
BstF5I	GGATG	4 cut(s)	121, 633, 663, 736
BstKTI	GATC	5 cut(s)	227, 708, 944, 1068, 1137
BstMBI	GATC	5 cut(s)	224, 705, 941, 1065, 1134
BstMWI	GCNNNNNNNGC	1 cut(s)	370
BstNI	CCWGG	1 cut(s)	248
BstNSI	RCATGY	1 cut(s)	377
BstPI	GGTNACC	1 cut(s)	254
BstSCI	CCNGG	2 cut(s)	246, 407
BstSFI	CTRYAG	1 cut(s)	82
BstSLI	GKGCMC	1 cut(s)	298
BstV1I	GCAGC	1 cut(s)	520
BstX2I	RGATCY	1 cut(s)	1134
BstXI	CCANNNNNNTGG	1 cut(s)	251
BstYI	RGATCY	1 cut(s)	1134
BstZ17I	GTATAC	1 cut(s)	900
Bsu15I	ATCGAT	1 cut(s)	866
Bsu36I	CCTNAGG	1 cut(s)	1061
BsuRI	GGCC	1 cut(s)	1058
BsuTUI	ATCGAT	1 cut(s)	866
BtgI	CCRYGG	1 cut(s)	379
BtsCI	GGATG	4 cut(s)	121, 633, 663, 736
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	2 cut(s)	375, 417
CciI	TCATGA	1 cut(s)	841
Cfr10I	RCCGGY	1 cut(s)	415
Cfr13I	GGNCC	3 cut(s)	73, 405, 1057
ClaI	ATCGAT	1 cut(s)	866
CsiI	ACCWGGT	1 cut(s)	246
Csp6I	GTAC	4 cut(s)	141, 795, 1009, 1240
CviAII	CATG	4 cut(s)	17, 374, 380, 842
CviQI	GTAC	4 cut(s)	141, 795, 1009, 1240
DdeI	CTNAG	2 cut(s)	669, 1061
DpnI	GATC	5 cut(s)	226, 707, 943, 1067, 1136
DpnII	GATC	5 cut(s)	224, 705, 941, 1065, 1134
Eam1104I	CTCTTC	2 cut(s)	932, 1068
EarI	CTCTTC	2 cut(s)	932, 1068
Ecl136II	GAGCTC	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	379
Eco24I	GRGCYC	1 cut(s)	185
Eco47I	GGWCC	2 cut(s)	73, 405
Eco53kI	GAGCTC	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	170
Eco81I	CCTNAGG	1 cut(s)	1061
Eco88I	CYCGRG	1 cut(s)	1086
Eco91I	GGTNACC	1 cut(s)	254
EcoICRI	GAGCTC	1 cut(s)	183
EcoO109I	RGGNCCY	2 cut(s)	405, 1057
EcoO65I	GGTNACC	1 cut(s)	254
EcoRI	GAATTC	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	246
EcoT14I	CCWWGG	1 cut(s)	379
EcoT22I	ATGCAT	1 cut(s)	1276
EcoT38I	GRGCYC	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	379
FaeI	CATG	4 cut(s)	20, 377, 383, 845
FatI	CATG	4 cut(s)	16, 373, 379, 841
FbaI	TGATCA	1 cut(s)	705
FblI	GTMKAC	1 cut(s)	899
Fnu4HI	GCNGC	1 cut(s)	534
FokI	GGATG	4 cut(s)	128, 640, 670, 743
FriOI	GRGCYC	1 cut(s)	185
Fsp4HI	GCNGC	1 cut(s)	534
GluI	GCNGC	1 cut(s)	534
HaeIII	GGCC	1 cut(s)	1058
HapII	CCGG	2 cut(s)	409, 416
Hin1II	CATG	4 cut(s)	20, 377, 383, 845
HindIII	AAGCTT	1 cut(s)	362
HinfI	GANTC	5 cut(s)	67, 170, 991, 1029, 1166
HpaII	CCGG	2 cut(s)	409, 416
HphI	GGTGA	2 cut(s)	266, 820
Hpy166II	GTNNAC	4 cut(s)	76, 507, 900, 1261
Hpy188I	TCNGA	6 cut(s)	39, 97, 150, 472, 786, 946
Hpy188III	TCNNGA	5 cut(s)	640, 842, 995, 1033, 1247
Hpy8I	GTNNAC	4 cut(s)	76, 507, 900, 1261
HpyAV	CCTTC	5 cut(s)	610, 766, 808, 871, 1153
HpyCH4III	ACNGT	4 cut(s)	127, 502, 756, 1244
HpyCH4IV	ACGT	1 cut(s)	1047
HpyCH4V	TGCA	6 cut(s)	32, 84, 322, 930, 1130, 1274
HpyF10VI	GCNNNNNNNGC	1 cut(s)	370
HpyF3I	CTNAG	2 cut(s)	669, 1061
HpySE526I	ACGT	1 cut(s)	1047
Hsp92II	CATG	4 cut(s)	20, 377, 383, 845
KroI	GCCGGC	1 cut(s)	415
KroNI	GCCGGC	1 cut(s)	417
Ksp22I	TGATCA	1 cut(s)	705
Kzo9I	GATC	5 cut(s)	224, 705, 941, 1065, 1134
LmnI	GCTCC	2 cut(s)	315, 1249
Lsp1109I	GCAGC	1 cut(s)	520
MabI	ACCWGGT	1 cut(s)	246
MaeII	ACGT	1 cut(s)	1047
MaeIII	GTNAC	2 cut(s)	254, 1108
MalI	GATC	5 cut(s)	226, 707, 943, 1067, 1136
MboI	GATC	5 cut(s)	224, 705, 941, 1065, 1134
MboII	GAAGA	4 cut(s)	224, 949, 959, 1085
MfeI	CAATTG	1 cut(s)	299
MflI	RGATCY	1 cut(s)	1134
MhlI	GDGCHC	3 cut(s)	185, 298, 312
MluCI	AATT	9 cut(s)	134, 299, 316, 355, 592, 787, 915, 1197, 1230
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	1 cut(s)	369
MnlI	CCTC	8 cut(s)	106, 123, 457, 523, 624, 658, 741, 1082
Mph1103I	ATGCAT	1 cut(s)	1276
MroNI	GCCGGC	1 cut(s)	415
MseI	TTAA	4 cut(s)	272, 1095, 1229, 1281
MslI	CAYNNNNRTG	1 cut(s)	378
MspI	CCGG	2 cut(s)	409, 416
MspR9I	CCNGG	2 cut(s)	248, 409
MunI	CAATTG	1 cut(s)	299
Mva1269I	GAATGC	3 cut(s)	322, 590, 1192
MvaI	CCWGG	1 cut(s)	248
MwoI	GCNNNNNNNGC	1 cut(s)	370
NaeI	GCCGGC	1 cut(s)	417
NciI	CCSGG	1 cut(s)	409
NcoI	CCATGG	1 cut(s)	379
NdeII	GATC	5 cut(s)	224, 705, 941, 1065, 1134
NgoMIV	GCCGGC	1 cut(s)	415
NlaIII	CATG	4 cut(s)	20, 377, 383, 845
NlaIV	GGNNCC	3 cut(s)	74, 295, 407
NmeAIII	GCCGAG	1 cut(s)	600
NmuCI	GTSAC	2 cut(s)	254, 1108
NsiI	ATGCAT	1 cut(s)	1276
NspI	RCATGY	1 cut(s)	377
PaeI	GCATGC	1 cut(s)	377
PaeR7I	CTCGAG	1 cut(s)	1086
PagI	TCATGA	1 cut(s)	841
PctI	GAATGC	3 cut(s)	322, 590, 1192
PdiI	GCCGGC	1 cut(s)	417
PfeI	GAWTC	4 cut(s)	67, 991, 1029, 1166
PkrI	GCNGC	1 cut(s)	535
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
PpuMI	RGGWCCY	1 cut(s)	405
PsiI	TTATAA	1 cut(s)	90
Psp124BI	GAGCTC	1 cut(s)	185
Psp5II	RGGWCCY	1 cut(s)	405
Psp6I	CCWGG	1 cut(s)	246
PspEI	GGTNACC	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	246
PspN4I	GGNNCC	3 cut(s)	74, 295, 407
PspPI	GGNCC	3 cut(s)	73, 405, 1057
PspPPI	RGGWCCY	1 cut(s)	405
PspXI	VCTCGAGB	1 cut(s)	1086
PstI	CTGCAG	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	1134
RsaI	GTAC	4 cut(s)	142, 796, 1010, 1241
RsaNI	GTAC	4 cut(s)	141, 795, 1009, 1240
RseI	CAYNNNNRTG	1 cut(s)	378
SacI	GAGCTC	1 cut(s)	185
SaqAI	TTAA	4 cut(s)	272, 1095, 1229, 1281
SatI	GCNGC	1 cut(s)	534
Sau3AI	GATC	5 cut(s)	224, 705, 941, 1065, 1134
Sau96I	GGNCC	3 cut(s)	73, 405, 1057
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	2 cut(s)	248, 409
SduI	GDGCHC	3 cut(s)	185, 298, 312
SexAI	ACCWGGT	1 cut(s)	246
SfcI	CTRYAG	1 cut(s)	82
Sfr274I	CTCGAG	1 cut(s)	1086
SinI	GGWCC	2 cut(s)	73, 405
SlaI	CTCGAG	1 cut(s)	1086
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	1 cut(s)	1086
SmoI	CTYRAG	1 cut(s)	1086
SphI	GCATGC	1 cut(s)	377
Sse9I	AATT	9 cut(s)	134, 299, 316, 355, 592, 787, 915, 1197, 1230
SsiI	CCGC	2 cut(s)	1000, 1104
SstI	GAGCTC	1 cut(s)	185
StyD4I	CCNGG	2 cut(s)	246, 407
StyI	CCWWGG	1 cut(s)	379
TaaI	ACNGT	4 cut(s)	127, 502, 756, 1244
TaiI	ACGT	1 cut(s)	1050
TaqI	TCGA	4 cut(s)	223, 332, 866, 1087
TasI	AATT	9 cut(s)	134, 299, 316, 355, 592, 787, 915, 1197, 1230
TatI	WGTACW	1 cut(s)	1008
TfiI	GAWTC	4 cut(s)	67, 991, 1029, 1166
Tru1I	TTAA	4 cut(s)	272, 1095, 1229, 1281
Tru9I	TTAA	4 cut(s)	272, 1095, 1229, 1281
TscAI	CASTG	1 cut(s)	132
TseFI	GTSAC	2 cut(s)	254, 1108
TseI	GCWGC	1 cut(s)	533
Tsp45I	GTSAC	2 cut(s)	254, 1108
TspDTI	ATGAA	5 cut(s)	135, 830, 858, 1199, 1304
TspGWI	ACGGA	2 cut(s)	163, 217
TspRI	CASTG	1 cut(s)	132
VpaK11BI	GGWCC	2 cut(s)	73, 405
XapI	RAATTY	3 cut(s)	134, 316, 787
XceI	RCATGY	1 cut(s)	377
XhoI	CTCGAG	1 cut(s)	1086
XmiI	GTMKAC	1 cut(s)	899
Zsp2I	ATGCAT	1 cut(s)	1276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.