Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Reverse (-)

6808843 .. 6809657

Gene Structure 815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG079500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 174 bp

ATGAAAAATGAGAGCAAAGAACCAGTTCTTGACTATGCTGAAGAAGCCCTCAATTGTGCTCCCAATTTATCAGAGGCCAATTTCATGGAGATGGGTTGGTTTCAAAGTCTGATGGCTTGGAATTACAATGCAGGTGCTGAGCAGATGGTCACACCTTACAAGGCAACTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0045962 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

57

Amino Acids

6.47

Weight (kDa)

4.22

Isoelectric Point (pI)

48.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	122
Acc36I	ACCTGC	1 cut(s)	122
AcuI	CTGAAG	1 cut(s)	60
AgsI	TTSAA	1 cut(s)	104
Alw21I	GWGCWC	1 cut(s)	61
AlwNI	CAGNNNCTG	1 cut(s)	137
AoxI	GGCC	1 cut(s)	75
Asp700I	GAANNNNTTC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	61
BccI	CCATC	3 cut(s)	85, 106, 139
BfaI	CTAG	1 cut(s)	172
BfuAI	ACCTGC	1 cut(s)	122
BlpI	GCTNAGC	1 cut(s)	138
Bpu1102I	GCTNAGC	1 cut(s)	138
Bse1I	ACTGG	1 cut(s)	23
BseMII	CTCAG	1 cut(s)	129
BseNI	ACTGG	1 cut(s)	23
BshFI	GGCC	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	61
BsnI	GGCC	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	61
Bsp1720I	GCTNAGC	1 cut(s)	138
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	130
BspMI	ACCTGC	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	23
BstDEI	CTNAG	1 cut(s)	138
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstXI	CCANNNNNNTGG	1 cut(s)	85
BsuRI	GGCC	1 cut(s)	77
BveI	ACCTGC	1 cut(s)	122
CaiI	CAGNNNCTG	1 cut(s)	137
CviAII	CATG	1 cut(s)	85
CviJI	RGCY	3 cut(s)	47, 77, 116
CviKI_1	RGCY	3 cut(s)	47, 77, 116
DdeI	CTNAG	1 cut(s)	138
Eco57I	CTGAAG	1 cut(s)	60
FaeI	CATG	1 cut(s)	88
FaiI	YATR	2 cut(s)	36, 86
FatI	CATG	1 cut(s)	84
FspBI	CTAG	1 cut(s)	172
HaeIII	GGCC	1 cut(s)	77
Hin1II	CATG	1 cut(s)	88
Hpy188I	TCNGA	2 cut(s)	73, 111
Hpy188III	TCNNGA	1 cut(s)	29
HpyCH4V	TGCA	1 cut(s)	131
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
HpyF3I	CTNAG	1 cut(s)	138
Hsp92II	CATG	1 cut(s)	88
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	2 cut(s)	36, 117
MaeI	CTAG	1 cut(s)	172
MaeIII	GTNAC	1 cut(s)	148
MboII	GAAGA	1 cut(s)	53
MfeI	CAATTG	1 cut(s)	52
MhlI	GDGCHC	1 cut(s)	61
MluCI	AATT	4 cut(s)	52, 64, 79, 121
MnlI	CCTC	2 cut(s)	59, 67
MroXI	GAANNNNTTC	1 cut(s)	24
MslI	CAYNNNNRTG	1 cut(s)	89
MunI	CAATTG	1 cut(s)	52
MwoI	GCNNNNNNNGC	1 cut(s)	44
NlaIII	CATG	1 cut(s)	88
NmuCI	GTSAC	1 cut(s)	148
PaqCI	CACCTGC	1 cut(s)	122
PdmI	GAANNNNTTC	1 cut(s)	24
PstNI	CAGNNNCTG	1 cut(s)	137
RseI	CAYNNNNRTG	1 cut(s)	89
SduI	GDGCHC	1 cut(s)	61
SetI	ASST	3 cut(s)	136, 157, 173
SgeI	CNNG	5 cut(s)	35, 41, 97, 129, 144
SmiMI	CAYNNNNRTG	1 cut(s)	89
Sse9I	AATT	4 cut(s)	52, 64, 79, 121
SspMI	CTAG	1 cut(s)	172
TasI	AATT	4 cut(s)	52, 64, 79, 121
TseFI	GTSAC	1 cut(s)	148
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	2 cut(s)	17, 73
XmnI	GAANNNNTTC	1 cut(s)	24
XspI	CTAG	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.