Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Forward (+)

14838473 .. 14838934

Gene Structure 462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00344710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGGGGAGAGCCACAACAACCTCCACCACCGCGCAATGACGTCGTCCTCCGCTGCTTCTCGATTGTGTTTGGGTATAAGGATCGCTTCTTCCTCCACCGCCGCCGAAATCGTGGAGGCTCGAGGCCACATTCTAAGGGCCACCGGCGGGAAGGACCGCCACGGTAAGGTCTACACGGCCAAAGGCCCCGGGGACCACTACGTCCGGCTCGCCGTCCACACCGTCATTCAATTCTACGATGCGCAAGACCGGCTCGAATACGGCCGGCCCGGAAGATCATCGATTGGGTCATCAAGAAAGCCAAGGCCGCAATCGACGAGCTCGACGAGCTGCCGCGGTGGAACCCGAACTCAATTTCGTTCGGATAACTTCTTCTCCGACGGTGTCGATATCCGCTGCGCAGACACGCGAACGCGAGCCTCCATTTCTCGATTGTGGAGGCTCCAAGTTCTTTGTCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

153

Amino Acids

16.88

Weight (kDa)

10.78

Isoelectric Point (pI)

45.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	49 - 92	3.2e-10	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	200
AatII	GACGTC	1 cut(s)	44
Acc16I	TGCGCA	2 cut(s)	243, 400
AccI	GTMKAC	1 cut(s)	171
AccII	CGCG	4 cut(s)	33, 336, 409, 415
AclWI	GGATC	1 cut(s)	89
AcoI	YGGCCR	2 cut(s)	177, 262
AcyI	GRCGYC	1 cut(s)	41
AfiI	CCNNNNNNNGG	2 cut(s)	147, 166
AgsI	TTSAA	1 cut(s)	230
AluBI	AGCT	2 cut(s)	321, 330
AluI	AGCT	2 cut(s)	321, 330
Alw21I	GWGCWC	1 cut(s)	323
AlwI	GGATC	1 cut(s)	89
Ama87I	CYCGRG	2 cut(s)	120, 188
AoxI	GGCC	7 cut(s)	124, 138, 177, 184, 262, 266, 305
ApeKI	GCWGC	3 cut(s)	53, 330, 396
AspLEI	GCGC	3 cut(s)	35, 244, 401
AspS9I	GGNCC	5 cut(s)	138, 154, 185, 193, 267
AsuC2I	CCSGG	3 cut(s)	189, 190, 270
AvaI	CYCGRG	2 cut(s)	120, 188
AvaII	GGWCC	2 cut(s)	154, 193
BanII	GRGCYC	1 cut(s)	323
Bbv12I	GWGCWC	1 cut(s)	323
BbvI	GCAGC	3 cut(s)	40, 317, 383
BceAI	ACGGC	3 cut(s)	192, 197, 277
BcgI	CGANNNNNNTGC	2 cut(s)	24, 58
BcnI	CCSGG	3 cut(s)	189, 190, 270
BisI	GCNGC	6 cut(s)	54, 102, 308, 331, 334, 397
BlsI	GCNGC	6 cut(s)	55, 103, 309, 332, 335, 398
Bme1390I	CCNGG	3 cut(s)	189, 190, 270
Bme18I	GGWCC	2 cut(s)	154, 193
BmeT110I	CYCGRG	2 cut(s)	120, 188
BmgT120I	GGNCC	5 cut(s)	138, 154, 185, 193, 267
BmiI	GGNNCC	4 cut(s)	187, 194, 343, 443
BmrFI	CCNGG	3 cut(s)	189, 190, 270
BmsI	GCATC	1 cut(s)	229
BpuMI	CCSGG	3 cut(s)	189, 190, 270
Bsa29I	ATCGAT	1 cut(s)	281
BsaHI	GRCGYC	1 cut(s)	41
BsaJI	CCNNGG	6 cut(s)	160, 187, 188, 189, 302, 334
BsaXI	ACNNNNNCTCC	2 cut(s)	359, 389
Bsc4I	CCNNNNNNNGG	2 cut(s)	147, 166
Bse118I	RCCGGY	3 cut(s)	143, 249, 264
Bse3DI	GCAATG	1 cut(s)	42
BseCI	ATCGAT	1 cut(s)	281
BseDI	CCNNGG	6 cut(s)	160, 187, 188, 189, 302, 334
BseLI	CCNNNNNNNGG	2 cut(s)	147, 166
BseMI	GCAATG	1 cut(s)	42
BseX3I	CGGCCG	1 cut(s)	262
BseXI	GCAGC	3 cut(s)	40, 317, 383
Bsh1236I	CGCG	4 cut(s)	33, 336, 409, 415
Bsh1285I	CGRYCG	1 cut(s)	265
BshFI	GGCC	7 cut(s)	126, 140, 179, 186, 264, 268, 307
BshVI	ATCGAT	1 cut(s)	281
BsiEI	CGRYCG	1 cut(s)	265
BsiHKAI	GWGCWC	1 cut(s)	323
BsiHKCI	CYCGRG	2 cut(s)	120, 188
BsiSI	CCGG	6 cut(s)	144, 189, 205, 250, 265, 270
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	2 cut(s)	147, 166
BsmFI	GGGAC	1 cut(s)	206
BsnI	GGCC	7 cut(s)	126, 140, 179, 186, 264, 268, 307
BsoBI	CYCGRG	2 cut(s)	120, 188
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp143I	GATC	2 cut(s)	81, 275
BspANI	GGCC	7 cut(s)	126, 140, 179, 186, 264, 268, 307
BspDI	ATCGAT	1 cut(s)	281
BspFNI	CGCG	4 cut(s)	33, 336, 409, 415
BspLI	GGNNCC	4 cut(s)	187, 194, 343, 443
BspPI	GGATC	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	42
BsrFI	RCCGGY	3 cut(s)	143, 249, 264
BssAI	RCCGGY	3 cut(s)	143, 249, 264
BssECI	CCNNGG	6 cut(s)	160, 187, 188, 189, 302, 334
BssMI	GATC	2 cut(s)	81, 275
BssNI	GRCGYC	1 cut(s)	41
BssT1I	CCWWGG	1 cut(s)	302
Bst4CI	ACNGT	3 cut(s)	164, 223, 383
BstACI	GRCGYC	1 cut(s)	41
BstC8I	GCNNGC	3 cut(s)	210, 266, 417
BstDEI	CTNAG	1 cut(s)	134
BstDSI	CCRYGG	2 cut(s)	160, 334
BstFNI	CGCG	4 cut(s)	33, 336, 409, 415
BstHHI	GCGC	3 cut(s)	35, 244, 401
BstKTI	GATC	2 cut(s)	84, 278
BstMBI	GATC	2 cut(s)	81, 275
BstMCI	CGRYCG	1 cut(s)	265
BstMWI	GCNNNNNNNGC	3 cut(s)	250, 307, 327
BstSCI	CCNGG	3 cut(s)	187, 188, 268
BstUI	CGCG	4 cut(s)	33, 336, 409, 415
BstV1I	GCAGC	3 cut(s)	40, 317, 383
BstZI	CGGCCG	1 cut(s)	262
Bsu15I	ATCGAT	1 cut(s)	281
BsuRI	GGCC	7 cut(s)	126, 140, 179, 186, 264, 268, 307
BsuTUI	ATCGAT	1 cut(s)	281
BtgI	CCRYGG	2 cut(s)	160, 334
Cac8I	GCNNGC	3 cut(s)	210, 266, 417
CfoI	GCGC	3 cut(s)	35, 244, 401
Cfr10I	RCCGGY	3 cut(s)	143, 249, 264
Cfr13I	GGNCC	5 cut(s)	138, 154, 185, 193, 267
Cfr42I	CCGCGG	1 cut(s)	337
Cfr9I	CCCGGG	1 cut(s)	188
ClaI	ATCGAT	1 cut(s)	281
DdeI	CTNAG	1 cut(s)	134
DpnI	GATC	2 cut(s)	83, 277
DpnII	GATC	2 cut(s)	81, 275
DrdI	GACNNNNNNGTC	1 cut(s)	200
DseDI	GACNNNNNNGTC	1 cut(s)	200
EaeI	YGGCCR	2 cut(s)	177, 262
EagI	CGGCCG	1 cut(s)	262
Ecl136II	GAGCTC	1 cut(s)	321
EclXI	CGGCCG	1 cut(s)	262
Eco130I	CCWWGG	1 cut(s)	302
Eco24I	GRGCYC	1 cut(s)	323
Eco32I	GATATC	1 cut(s)	391
Eco47I	GGWCC	2 cut(s)	154, 193
Eco52I	CGGCCG	1 cut(s)	262
Eco53kI	GAGCTC	1 cut(s)	321
Eco88I	CYCGRG	2 cut(s)	120, 188
EcoICRI	GAGCTC	1 cut(s)	321
EcoO109I	RGGNCCY	1 cut(s)	185
EcoRV	GATATC	1 cut(s)	391
EcoT14I	CCWWGG	1 cut(s)	302
EcoT38I	GRGCYC	1 cut(s)	323
ErhI	CCWWGG	1 cut(s)	302
FaiI	YATR	1 cut(s)	77
FalI	AAGNNNNNCTT	2 cut(s)	70, 102
FaqI	GGGAC	1 cut(s)	206
FauI	CCCGC	1 cut(s)	140
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	6 cut(s)	54, 102, 308, 331, 334, 397
FriOI	GRGCYC	1 cut(s)	323
FseI	GGCCGGCC	1 cut(s)	268
Fsp4HI	GCNGC	6 cut(s)	54, 102, 308, 331, 334, 397
FspI	TGCGCA	2 cut(s)	243, 400
GlaI	GCGC	3 cut(s)	34, 243, 400
GluI	GCNGC	6 cut(s)	54, 102, 308, 331, 334, 397
HaeIII	GGCC	7 cut(s)	126, 140, 179, 186, 264, 268, 307
HapII	CCGG	6 cut(s)	144, 189, 205, 250, 265, 270
HhaI	GCGC	3 cut(s)	35, 244, 401
Hin1I	GRCGYC	1 cut(s)	41
Hin6I	GCGC	3 cut(s)	33, 242, 399
HinP1I	GCGC	3 cut(s)	33, 242, 399
HpaII	CCGG	6 cut(s)	144, 189, 205, 250, 265, 270
Hpy166II	GTNNAC	2 cut(s)	172, 217
Hpy188I	TCNGA	2 cut(s)	364, 379
Hpy188III	TCNNGA	3 cut(s)	60, 294, 429
Hpy8I	GTNNAC	2 cut(s)	172, 217
Hpy99I	CGWCG	4 cut(s)	46, 319, 328, 383
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	3 cut(s)	164, 223, 383
HpyCH4IV	ACGT	2 cut(s)	41, 201
HpyF10VI	GCNNNNNNNGC	3 cut(s)	250, 307, 327
HpyF3I	CTNAG	1 cut(s)	134
HpySE526I	ACGT	2 cut(s)	41, 201
Hsp92I	GRCGYC	1 cut(s)	41
HspAI	GCGC	3 cut(s)	33, 242, 399
KroI	GCCGGC	1 cut(s)	264
KroNI	GCCGGC	1 cut(s)	266
KspI	CCGCGG	1 cut(s)	337
Kzo9I	GATC	2 cut(s)	81, 275
LmnI	GCTCC	1 cut(s)	447
LpnPI	CCDG	6 cut(s)	157, 202, 218, 263, 278, 283
Lsp1109I	GCAGC	3 cut(s)	40, 317, 383
LweI	GCATC	1 cut(s)	229
MaeII	ACGT	2 cut(s)	41, 201
MalI	GATC	2 cut(s)	83, 277
MboI	GATC	2 cut(s)	81, 275
MboII	GAAGA	3 cut(s)	81, 285, 364
MhlI	GDGCHC	1 cut(s)	323
MluCI	AATT	2 cut(s)	230, 353
MmeI	TCCRAC	1 cut(s)	402
MnlI	CCTC	7 cut(s)	32, 58, 103, 109, 116, 430, 432
MroNI	GCCGGC	1 cut(s)	264
MspA1I	CMGCKG	3 cut(s)	53, 336, 396
MspI	CCGG	6 cut(s)	144, 189, 205, 250, 265, 270
MspR9I	CCNGG	3 cut(s)	189, 190, 270
MvnI	CGCG	4 cut(s)	33, 336, 409, 415
MwoI	GCNNNNNNNGC	3 cut(s)	250, 307, 327
NaeI	GCCGGC	1 cut(s)	266
NciI	CCSGG	3 cut(s)	189, 190, 270
NdeII	GATC	2 cut(s)	81, 275
NgoMIV	GCCGGC	1 cut(s)	264
NlaIV	GGNNCC	4 cut(s)	187, 194, 343, 443
NsbI	TGCGCA	2 cut(s)	243, 400
PaeR7I	CTCGAG	1 cut(s)	120
PcsI	WCGNNNNNNNCGW	2 cut(s)	320, 323
PdiI	GCCGGC	1 cut(s)	266
PflFI	GACNNNGTC	2 cut(s)	43, 383
PkrI	GCNGC	6 cut(s)	55, 103, 309, 332, 335, 398
Psp124BI	GAGCTC	1 cut(s)	323
PspN4I	GGNNCC	4 cut(s)	187, 194, 343, 443
PspPI	GGNCC	5 cut(s)	138, 154, 185, 193, 267
PspXI	VCTCGAGB	1 cut(s)	120
PsyI	GACNNNGTC	2 cut(s)	43, 383
RigI	GGCCGGCC	1 cut(s)	268
SacI	GAGCTC	1 cut(s)	323
SacII	CCGCGG	1 cut(s)	337
SatI	GCNGC	6 cut(s)	54, 102, 308, 331, 334, 397
Sau3AI	GATC	2 cut(s)	81, 275
Sau96I	GGNCC	5 cut(s)	138, 154, 185, 193, 267
ScrFI	CCNGG	3 cut(s)	189, 190, 270
SduI	GDGCHC	1 cut(s)	323
SetI	ASST	6 cut(s)	24, 44, 171, 204, 323, 332
SfaNI	GCATC	1 cut(s)	229
Sfr274I	CTCGAG	1 cut(s)	120
Sfr303I	CCGCGG	1 cut(s)	337
SgrAI	CRCCGGYG	1 cut(s)	143
SgrBI	CCGCGG	1 cut(s)	337
SinI	GGWCC	2 cut(s)	154, 193
SlaI	CTCGAG	1 cut(s)	120
SmaI	CCCGGG	1 cut(s)	190
SmlI	CTYRAG	1 cut(s)	120
SmoI	CTYRAG	1 cut(s)	120
Sse9I	AATT	2 cut(s)	230, 353
SstI	GAGCTC	1 cut(s)	323
StyD4I	CCNGG	3 cut(s)	187, 188, 268
StyI	CCWWGG	1 cut(s)	302
TaaI	ACNGT	3 cut(s)	164, 223, 383
TaiI	ACGT	2 cut(s)	44, 204
TaqI	TCGA	8 cut(s)	61, 121, 255, 281, 314, 323, 387, 430
TasI	AATT	2 cut(s)	230, 353
TauI	GCSGC	3 cut(s)	104, 310, 336
TseI	GCWGC	3 cut(s)	53, 330, 396
TspMI	CCCGGG	1 cut(s)	188
Tth111I	GACNNNGTC	2 cut(s)	43, 383
VpaK11BI	GGWCC	2 cut(s)	154, 193
XhoI	CTCGAG	1 cut(s)	120
XmaI	CCCGGG	1 cut(s)	188
XmiI	GTMKAC	1 cut(s)	171
ZraI	GACGTC	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.