Prupe.4G057100_v2.0.a1
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000293
Physical Location & Seq
Reverse (-)
2734854 .. 2736654
1801 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G057100.1

Sequence Viewer

Length: 861 bp
ATGAGTCACCTGCAAGACATTCTGCGTCTGCAAATGTTACAACAGAGAGGATCAAAGAATGAAGATCAAGATCAACCAGAAGATGTTCAAGAAGAAGAACAACAATCACAGAAGAGACTAATTGGTCAATATCAGCATGTTCAAGAACCACCAAACTATGGACCATTAAATGGCAAGATGTTGAATACCCACACAGCAAAATCCTCCAGGAAAAGTTGTTACTCAATGTCTTCTTCTTCTTCACATTTGGCATCTGAACAAGCGGAAATCAACAATGCGAGATATGGGAAGAATGTAAAAGTTCATGGAGGCCACATTGTCCGATCCACTGCAAGAAAAGAAAGGCACAGCAAGGTGTACACTTCCAAAGGTCCTAGAGACCGGAGGTTCCGGCTTTCAGCTCCGACTGCTATACAGTTCTATGATGTCCAAGACCGCCTTGGCTACGACCGGCCAAGTAAGGCCATTGATTGGCTCATTGAGAAGGCCAAGGCAGCAATTGAGGCTCTCTCTGAGTCTGAACTACCTGGAAAAGAGTATGACTGTACTAATATCAACTCTGCTCAACAGACAGAGCAAGACATTGGAGAAGAGAGTATGCGTCAGTTTCAGCATCACCAGAGAAGCTATGGTGGTGAACCAGAAAAACTGAACAATGTGAACAGTTTTAAAGAACCAGTTCTTGATCACCACCAGTTAAGTTCAATGAACTATGCTGAAGAAGCCCTCAATTCTGCCTCAAGTTTAACAGATTCCAAAATGGAGGTGGCTTGGTTTCAAAGTTTGATGTCTTGGAATTATAATGCAGGTGATGGAGGAGAAGGCTGTCCTTTCAGTTCATCCCATGTATATCTGCAATAG

Protein Analysis

287

Amino Acids

32.5

Weight (kDa)

6.19

Isoelectric Point (pI)

74.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000293)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca FvH4_3g08160 FvH4_3g18740
malus_domestica MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis pycom03g18430 pycom11g22850
rosa_chinensis RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 801
AarI CACCTGC 2 cut(s) 18, 797
AasI GACNNNNNNGTC 1 cut(s) 123
Acc36I ACCTGC 2 cut(s) 18, 797
AccB7I CCANNNNNTGG 3 cut(s) 158, 170, 471
AciI CCGC 2 cut(s) 263, 436
AclWI GGATC 2 cut(s) 58, 318
AcoI YGGCCR 1 cut(s) 452
AcuI CTGAAG 1 cut(s) 738
AfaI GTAC 2 cut(s) 359, 547
AfiI CCNNNNNNNGG 3 cut(s) 158, 170, 471
AgsI TTSAA 5 cut(s) 89, 143, 184, 705, 779
AjnI CCWGG 2 cut(s) 206, 526
AluBI AGCT 2 cut(s) 401, 627
AluI AGCT 2 cut(s) 401, 627
Alw26I GTCTC 2 cut(s) 109, 372
AlwI GGATC 2 cut(s) 58, 318
AoxI GGCC 4 cut(s) 310, 452, 462, 486
ApeKI GCWGC 1 cut(s) 494
Asp700I GAANNNNTTC 2 cut(s) 84, 678
AspS9I GGNCC 2 cut(s) 161, 371
AsuHPI GGTGA 4 cut(s) 608, 647, 680, 821
AvaII GGWCC 2 cut(s) 161, 371
BbsI GAAGAC 1 cut(s) 222
BbvI GCAGC 1 cut(s) 506
BccI CCATC 1 cut(s) 806
BciT130I CCWGG 2 cut(s) 208, 528
BclI TGATCA 1 cut(s) 685
BcoDI GTCTC 2 cut(s) 109, 372
BfaI CTAG 1 cut(s) 375
BfuAI ACCTGC 2 cut(s) 18, 797
BisI GCNGC 1 cut(s) 495
BlsI GCNGC 1 cut(s) 496
Bme1390I CCNGG 2 cut(s) 208, 528
Bme18I GGWCC 2 cut(s) 161, 371
BmgT120I GGNCC 2 cut(s) 161, 371
BmiI GGNNCC 1 cut(s) 389
BmrFI CCNGG 2 cut(s) 208, 528
BmsI GCATC 2 cut(s) 260, 622
BpiI GAAGAC 1 cut(s) 222
BplI GAGNNNNNCTC 2 cut(s) 494, 526
BpmI CTGGAG 1 cut(s) 190
BpuEI CTTGAG 1 cut(s) 724
BsaBI GATNNNNATC 1 cut(s) 69
BsaI GGTCTC 1 cut(s) 372
BsaJI CCNNGG 2 cut(s) 439, 489
BsaWI WCCGGW 1 cut(s) 381
Bsc4I CCNNNNNNNGG 3 cut(s) 158, 170, 471
Bse118I RCCGGY 1 cut(s) 450
Bse1I ACTGG 2 cut(s) 677, 694
Bse8I GATNNNNATC 1 cut(s) 69
BseBI CCWGG 2 cut(s) 208, 528
BseDI CCNNGG 2 cut(s) 439, 489
BseGI GGATG 1 cut(s) 839
BseJI GATNNNNATC 1 cut(s) 69
BseLI CCNNNNNNNGG 3 cut(s) 158, 170, 471
BseMII CTCAG 1 cut(s) 504
BseNI ACTGG 2 cut(s) 677, 694
BseRI GAGGAG 1 cut(s) 831
BseXI GCAGC 1 cut(s) 506
Bsh1285I CGRYCG 1 cut(s) 451
BshFI GGCC 4 cut(s) 312, 454, 464, 488
BsiEI CGRYCG 1 cut(s) 451
BsiSI CCGG 3 cut(s) 382, 391, 451
BslI CCNNNNNNNGG 3 cut(s) 158, 170, 471
BsmAI GTCTC 2 cut(s) 109, 372
BsnI GGCC 4 cut(s) 312, 454, 464, 488
Bso31I GGTCTC 1 cut(s) 372
Bsp1407I TGTACA 1 cut(s) 357
Bsp143I GATC 5 cut(s) 50, 64, 70, 323, 685
BspACI CCGC 2 cut(s) 263, 436
BspANI GGCC 4 cut(s) 312, 454, 464, 488
BspCNI CTCAG 1 cut(s) 505
BspLI GGNNCC 1 cut(s) 389
BspMI ACCTGC 2 cut(s) 18, 797
BspPI GGATC 2 cut(s) 58, 318
BspTNI GGTCTC 1 cut(s) 372
BsrFI RCCGGY 1 cut(s) 450
BsrGI TGTACA 1 cut(s) 357
BsrI ACTGG 2 cut(s) 677, 694
BssAI RCCGGY 1 cut(s) 450
BssECI CCNNGG 2 cut(s) 439, 489
BssMI GATC 5 cut(s) 50, 64, 70, 323, 685
BssT1I CCWWGG 2 cut(s) 439, 489
Bst2UI CCWGG 2 cut(s) 208, 528
Bst4CI ACNGT 3 cut(s) 417, 545, 665
Bst6I CTCTTC 2 cut(s) 107, 585
BstAUI TGTACA 1 cut(s) 357
BstDEI CTNAG 1 cut(s) 513
BstF5I GGATG 1 cut(s) 839
BstKTI GATC 5 cut(s) 53, 67, 73, 326, 688
BstMAI GTCTC 2 cut(s) 109, 372
BstMBI GATC 5 cut(s) 50, 64, 70, 323, 685
BstMCI CGRYCG 1 cut(s) 451
BstMWI GCNNNNNNNGC 4 cut(s) 407, 494, 503, 722
BstNI CCWGG 2 cut(s) 208, 528
BstNSI RCATGY 1 cut(s) 140
BstSCI CCNGG 2 cut(s) 206, 526
BstV1I GCAGC 1 cut(s) 506
BstV2I GAAGAC 1 cut(s) 222
BsuRI GGCC 4 cut(s) 312, 454, 464, 488
BtsCI GGATG 1 cut(s) 839
BtsI GCAGTG 1 cut(s) 327
BtsIMutI CAGTG 1 cut(s) 327
BveI ACCTGC 2 cut(s) 18, 797
Cfr10I RCCGGY 1 cut(s) 450
Cfr13I GGNCC 2 cut(s) 161, 371
CseI GACGC 2 cut(s) 14, 590
Csp6I GTAC 2 cut(s) 358, 546
CviAII CATG 3 cut(s) 137, 305, 845
CviQI GTAC 2 cut(s) 358, 546
DdeI CTNAG 1 cut(s) 513
DpnI GATC 5 cut(s) 52, 66, 72, 325, 687
DpnII GATC 5 cut(s) 50, 64, 70, 323, 685
DraI TTTAAA 1 cut(s) 670
DrdI GACNNNNNNGTC 1 cut(s) 123
DseDI GACNNNNNNGTC 1 cut(s) 123
EaeI YGGCCR 1 cut(s) 452
Eam1104I CTCTTC 2 cut(s) 107, 585
EarI CTCTTC 2 cut(s) 107, 585
Eco130I CCWWGG 2 cut(s) 439, 489
Eco31I GGTCTC 1 cut(s) 372
Eco47I GGWCC 2 cut(s) 161, 371
Eco57I CTGAAG 1 cut(s) 738
EcoO109I RGGNCCY 1 cut(s) 371
EcoRII CCWGG 2 cut(s) 206, 526
EcoT14I CCWWGG 2 cut(s) 439, 489
ErhI CCWWGG 2 cut(s) 439, 489
FaeI CATG 3 cut(s) 140, 308, 848
FalI AAGNNNNNCTT 2 cut(s) 423, 455
FatI CATG 3 cut(s) 136, 304, 844
FbaI TGATCA 1 cut(s) 685
Fnu4HI GCNGC 1 cut(s) 495
FokI GGATG 1 cut(s) 826
Fsp4HI GCNGC 1 cut(s) 495
FspBI CTAG 1 cut(s) 375
GluI GCNGC 1 cut(s) 495
GsuI CTGGAG 1 cut(s) 190
HaeIII GGCC 4 cut(s) 312, 454, 464, 488
HapII CCGG 3 cut(s) 382, 391, 451
HgaI GACGC 2 cut(s) 14, 590
Hin1II CATG 3 cut(s) 140, 308, 848
HinfI GANTC 3 cut(s) 4, 515, 752
HpaII CCGG 3 cut(s) 382, 391, 451
HphI GGTGA 4 cut(s) 608, 647, 680, 821
Hpy166II GTNNAC 4 cut(s) 358, 360, 638, 661
Hpy188I TCNGA 5 cut(s) 256, 323, 405, 514, 520
Hpy188III TCNNGA 4 cut(s) 68, 89, 143, 683
Hpy8I GTNNAC 4 cut(s) 358, 360, 638, 661
HpyAV CCTTC 2 cut(s) 478, 815
HpyCH4III ACNGT 3 cut(s) 417, 545, 665
HpyCH4V TGCA 5 cut(s) 13, 31, 332, 806, 856
HpyF10VI GCNNNNNNNGC 4 cut(s) 407, 494, 503, 722
HpyF3I CTNAG 1 cut(s) 513
Hsp92II CATG 3 cut(s) 140, 308, 848
Ksp22I TGATCA 1 cut(s) 685
Kzo9I GATC 5 cut(s) 50, 64, 70, 323, 685
LmnI GCTCC 1 cut(s) 406
Lsp1109I GCAGC 1 cut(s) 506
LweI GCATC 2 cut(s) 260, 622
MaeI CTAG 1 cut(s) 375
MaeIII GTNAC 3 cut(s) 5, 36, 218
MalI GATC 5 cut(s) 52, 66, 72, 325, 687
MboI GATC 5 cut(s) 50, 64, 70, 323, 685
MfeI CAATTG 1 cut(s) 498
MluCI AATT 4 cut(s) 120, 498, 730, 796
MlyI GAGTC 2 cut(s) 13, 524
MmeI TCCRAC 1 cut(s) 428
MnlI CCTC 9 cut(s) 41, 214, 302, 378, 496, 737, 748, 757, 809
MroXI GAANNNNTTC 2 cut(s) 84, 678
MseI TTAA 4 cut(s) 167, 669, 698, 746
MspI CCGG 3 cut(s) 382, 391, 451
MspR9I CCNGG 2 cut(s) 208, 528
MunI CAATTG 1 cut(s) 498
MvaI CCWGG 2 cut(s) 208, 528
MwoI GCNNNNNNNGC 4 cut(s) 407, 494, 503, 722
NdeII GATC 5 cut(s) 50, 64, 70, 323, 685
NlaIII CATG 3 cut(s) 140, 308, 848
NlaIV GGNNCC 1 cut(s) 389
NmuCI GTSAC 1 cut(s) 5
NspI RCATGY 1 cut(s) 140
PaqCI CACCTGC 2 cut(s) 18, 797
PdmI GAANNNNTTC 2 cut(s) 84, 678
PfeI GAWTC 1 cut(s) 752
PflMI CCANNNNNTGG 3 cut(s) 158, 170, 471
PfoI TCCNGGA 1 cut(s) 206
PkrI GCNGC 1 cut(s) 496
PleI GAGTC 2 cut(s) 12, 523
PpsI GAGTC 2 cut(s) 12, 523
PpuMI RGGWCCY 1 cut(s) 371
PsiI TTATAA 1 cut(s) 801
Psp5II RGGWCCY 1 cut(s) 371
Psp6I CCWGG 2 cut(s) 206, 526
PspGI CCWGG 2 cut(s) 206, 526
PspN4I GGNNCC 1 cut(s) 389
PspPI GGNCC 2 cut(s) 161, 371
PspPPI RGGWCCY 1 cut(s) 371
RsaI GTAC 2 cut(s) 359, 547
RsaNI GTAC 2 cut(s) 358, 546
SaqAI TTAA 4 cut(s) 167, 669, 698, 746
SatI GCNGC 1 cut(s) 495
Sau3AI GATC 5 cut(s) 50, 64, 70, 323, 685
Sau96I GGNCC 2 cut(s) 161, 371
SchI GAGTC 2 cut(s) 13, 524
ScrFI CCNGG 2 cut(s) 208, 528
SetI ASST 9 cut(s) 12, 357, 373, 389, 403, 529, 629, 768, 811
SfaNI GCATC 2 cut(s) 260, 622
SinI GGWCC 2 cut(s) 161, 371
SmlI CTYRAG 1 cut(s) 739
SmoI CTYRAG 1 cut(s) 739
Sse9I AATT 4 cut(s) 120, 498, 730, 796
SsiI CCGC 2 cut(s) 263, 436
SspMI CTAG 1 cut(s) 375
StyD4I CCNGG 2 cut(s) 206, 526
StyI CCWWGG 2 cut(s) 439, 489
TaaI ACNGT 3 cut(s) 417, 545, 665
TasI AATT 4 cut(s) 120, 498, 730, 796
TatI WGTACW 2 cut(s) 357, 545
TfiI GAWTC 1 cut(s) 752
Tru1I TTAA 4 cut(s) 167, 669, 698, 746
Tru9I TTAA 4 cut(s) 167, 669, 698, 746
TscAI CASTG 1 cut(s) 334
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 1 cut(s) 494
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 4 cut(s) 75, 293, 722, 828
TspRI CASTG 1 cut(s) 334
Van91I CCANNNNNTGG 3 cut(s) 158, 170, 471
VpaK11BI GGWCC 2 cut(s) 161, 371
XceI RCATGY 1 cut(s) 140
XcmI CCANNNNNNNNNTGG 3 cut(s) 437, 626, 763
XmnI GAANNNNTTC 2 cut(s) 84, 678
XspI CTAG 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.