Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Reverse (-)

6659419 .. 6660571

Gene Structure 1153 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29084

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGTTCGTCAAACTTGAGAGGAAAAAGAGAGAGACTTCAATGACTTCTCATTCCCAAGAGAGTCTCTATCTGCAAATGTCACAACAAAGAGAATCAAAGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAAATGAAGCTCAAGATCAACCAGAAGTTGCTCAAGCACAACAAGACTATGGAGCAAGCAGAGTGGAATCTAAACAACCAAGCATGAACAATGAAAGATATGGAAGGATCGTGAAGGTTCAAGGAGGCCACGTTATTAGATCAATTGCGAGAAAAGACAGGCACAGCAAGATCTACACGTCCAAGGGCCCAAGAGACAGAAGGTTCCGGCTTTCAGCTCAAACTGCCATAGAGTTCTATGATGTTCAAGACCGTCTTGGCTTTGATAGACCAAGCAAGGCCATTGACTGGCTCATTCACAAGGCCAAGGCCGCCATTGAAGCTCTTGAAGATTCTTCTACTACACACCAGCCTCAGCATCACCAAGGAGGCAATGCCGAGCCTGAAACTGTCAAAACTCATCAGCCTTTGGACGAGGGCACTATGAAAAATGAGAGCAAAGAACCTGTTCTTGACTATGCTGAAGAAGCCCTCAATTGTGCTCCCAATTTATCAGAGGCCAATTTCATGGAGATGGGTTGGTTTCAAAGTCTGATGGCTTGGAATTACAATGCAGGTGATGGTGGAGAAGGTTGTTCTTTCAATTCATCATCTGTTACTCTGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0045962 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

246

Amino Acids

28.09

Weight (kDa)

5.09

Isoelectric Point (pI)

68.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	94 - 174	1.2e-31	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	677
Acc36I	ACCTGC	1 cut(s)	677
AccB7I	CCANNNNNTGG	1 cut(s)	420
AciI	CCGC	1 cut(s)	444
AclWI	GGATC	1 cut(s)	248
AcuI	CTGAAG	1 cut(s)	615
AfiI	CCNNNNNNNGG	1 cut(s)	420
AflIII	ACRYGT	1 cut(s)	309
AgsI	TTSAA	7 cut(s)	39, 254, 380, 452, 461, 659, 715
AjiI	CACGTC	1 cut(s)	312
AluBI	AGCT	3 cut(s)	143, 350, 455
AluI	AGCT	3 cut(s)	143, 350, 455
Alw21I	GWGCWC	1 cut(s)	616
Alw26I	GTCTC	3 cut(s)	26, 68, 321
AlwI	GGATC	1 cut(s)	248
AoxI	GGCC	6 cut(s)	259, 319, 411, 435, 441, 630
ApaI	GGGCCC	1 cut(s)	323
Asp700I	GAANNNNTTC	1 cut(s)	579
AspS9I	GGNCC	2 cut(s)	319, 320
AsuHPI	GGTGA	2 cut(s)	485, 701
BaeGI	GKGCMC	2 cut(s)	323, 554
BanII	GRGCYC	1 cut(s)	323
Bbv12I	GWGCWC	1 cut(s)	616
BbvCI	CCTCAGC	1 cut(s)	486
BccI	CCATC	3 cut(s)	640, 661, 686
BcoDI	GTCTC	3 cut(s)	26, 68, 321
BfmI	CTRYAG	1 cut(s)	737
BfuAI	ACCTGC	1 cut(s)	677
BglII	AGATCT	1 cut(s)	303
BisI	GCNGC	1 cut(s)	444
BlsI	GCNGC	1 cut(s)	445
BmgBI	CACGTC	1 cut(s)	312
BmgT120I	GGNCC	2 cut(s)	319, 320
BmiI	GGNNCC	2 cut(s)	321, 338
BmsI	GCATC	1 cut(s)	499
Bpu10I	CCTNAGC	1 cut(s)	486
BpuEI	CTTGAG	3 cut(s)	35, 129, 150
BsaJI	CCNNGG	3 cut(s)	315, 438, 496
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bsc4I	CCNNNNNNNGG	1 cut(s)	420
Bse1I	ACTGG	1 cut(s)	425
Bse3DI	GCAATG	1 cut(s)	511
BseDI	CCNNGG	3 cut(s)	315, 438, 496
BseLI	CCNNNNNNNGG	1 cut(s)	420
BseMI	GCAATG	1 cut(s)	511
BseMII	CTCAG	1 cut(s)	500
BseNI	ACTGG	1 cut(s)	425
BseRI	GAGGAG	9 cut(s)	119, 122, 125, 128, 131, 134, 137, 140, 143
BseSI	GKGCMC	2 cut(s)	323, 554
BshFI	GGCC	6 cut(s)	261, 321, 413, 437, 443, 632
BsiHKAI	GWGCWC	1 cut(s)	616
BsiSI	CCGG	1 cut(s)	340
BslI	CCNNNNNNNGG	1 cut(s)	420
BsmAI	GTCTC	3 cut(s)	26, 68, 321
BsnI	GGCC	6 cut(s)	261, 321, 413, 437, 443, 632
Bsp120I	GGGCCC	1 cut(s)	319
Bsp1286I	GDGCHC	3 cut(s)	323, 554, 616
Bsp143I	GATC	4 cut(s)	148, 240, 272, 303
BspACI	CCGC	1 cut(s)	444
BspANI	GGCC	6 cut(s)	261, 321, 413, 437, 443, 632
BspCNI	CTCAG	1 cut(s)	499
BspLI	GGNNCC	2 cut(s)	321, 338
BspMI	ACCTGC	1 cut(s)	677
BspPI	GGATC	1 cut(s)	248
BsrDI	GCAATG	1 cut(s)	511
BsrI	ACTGG	1 cut(s)	425
BssECI	CCNNGG	3 cut(s)	315, 438, 496
BssMI	GATC	4 cut(s)	148, 240, 272, 303
BssT1I	CCWWGG	3 cut(s)	315, 438, 496
Bst4CI	ACNGT	2 cut(s)	386, 523
BstC8I	GCNNGC	1 cut(s)	190
BstDEI	CTNAG	1 cut(s)	486
BstKTI	GATC	4 cut(s)	151, 243, 275, 306
BstMAI	GTCTC	3 cut(s)	26, 68, 321
BstMBI	GATC	4 cut(s)	148, 240, 272, 303
BstMWI	GCNNNNNNNGC	4 cut(s)	356, 443, 452, 599
BstSFI	CTRYAG	1 cut(s)	737
BstSLI	GKGCMC	2 cut(s)	323, 554
BstX2I	RGATCY	1 cut(s)	303
BstXI	CCANNNNNNTGG	1 cut(s)	640
BstYI	RGATCY	1 cut(s)	303
BsuRI	GGCC	6 cut(s)	261, 321, 413, 437, 443, 632
BtrI	CACGTC	1 cut(s)	312
BveI	ACCTGC	1 cut(s)	677
Cac8I	GCNNGC	1 cut(s)	190
Cfr13I	GGNCC	2 cut(s)	319, 320
CspCI	CAANNNNNGTGG	2 cut(s)	177, 212
CviAII	CATG	2 cut(s)	217, 640
DdeI	CTNAG	1 cut(s)	486
DpnI	GATC	4 cut(s)	150, 242, 274, 305
DpnII	GATC	4 cut(s)	148, 240, 272, 303
Eco130I	CCWWGG	3 cut(s)	315, 438, 496
Eco24I	GRGCYC	1 cut(s)	323
Eco57I	CTGAAG	1 cut(s)	615
EcoO109I	RGGNCCY	1 cut(s)	319
EcoT14I	CCWWGG	3 cut(s)	315, 438, 496
EcoT38I	GRGCYC	1 cut(s)	323
ErhI	CCWWGG	3 cut(s)	315, 438, 496
FaeI	CATG	2 cut(s)	220, 643
FaiI	YATR	9 cut(s)	183, 218, 234, 362, 372, 557, 591, 641, 739
FalI	AAGNNNNNCTT	2 cut(s)	372, 404
FatI	CATG	2 cut(s)	216, 639
Fnu4HI	GCNGC	1 cut(s)	444
FriOI	GRGCYC	1 cut(s)	323
Fsp4HI	GCNGC	1 cut(s)	444
GluI	GCNGC	1 cut(s)	444
HaeIII	GGCC	6 cut(s)	261, 321, 413, 437, 443, 632
HapII	CCGG	1 cut(s)	340
Hin1II	CATG	2 cut(s)	220, 643
HinfI	GANTC	4 cut(s)	61, 92, 200, 464
HpaII	CCGG	1 cut(s)	340
HphI	GGTGA	2 cut(s)	485, 701
Hpy188I	TCNGA	2 cut(s)	628, 666
Hpy188III	TCNNGA	5 cut(s)	146, 244, 380, 458, 584
HpyAV	CCTTC	4 cut(s)	231, 241, 327, 695
HpyCH4III	ACNGT	2 cut(s)	386, 523
HpyCH4IV	ACGT	2 cut(s)	264, 311
HpyCH4V	TGCA	2 cut(s)	73, 686
HpyF10VI	GCNNNNNNNGC	4 cut(s)	356, 443, 452, 599
HpyF3I	CTNAG	1 cut(s)	486
HpySE526I	ACGT	2 cut(s)	264, 311
Hsp92II	CATG	2 cut(s)	220, 643
Kzo9I	GATC	4 cut(s)	148, 240, 272, 303
LmnI	GCTCC	2 cut(s)	185, 619
LpnPI	CCDG	9 cut(s)	86, 168, 277, 353, 406, 494, 528, 591, 672
LweI	GCATC	1 cut(s)	499
MaeII	ACGT	2 cut(s)	264, 311
MaeIII	GTNAC	2 cut(s)	78, 727
MalI	GATC	4 cut(s)	150, 242, 274, 305
MboI	GATC	4 cut(s)	148, 240, 272, 303
MboII	GAAGA	3 cut(s)	459, 473, 608
MfeI	CAATTG	2 cut(s)	276, 607
MflI	RGATCY	1 cut(s)	303
MhlI	GDGCHC	3 cut(s)	323, 554, 616
MluCI	AATT	6 cut(s)	276, 607, 619, 634, 676, 715
MlyI	GAGTC	1 cut(s)	70
MroXI	GAANNNNTTC	1 cut(s)	579
MslI	CAYNNNNRTG	1 cut(s)	644
MspI	CCGG	1 cut(s)	340
MunI	CAATTG	2 cut(s)	276, 607
MwoI	GCNNNNNNNGC	4 cut(s)	356, 443, 452, 599
NdeII	GATC	4 cut(s)	148, 240, 272, 303
NlaIII	CATG	2 cut(s)	220, 643
NlaIV	GGNNCC	2 cut(s)	321, 338
NmeAIII	GCCGAG	1 cut(s)	535
NmuCI	GTSAC	1 cut(s)	78
PaqCI	CACCTGC	1 cut(s)	677
PdmI	GAANNNNTTC	1 cut(s)	579
PfeI	GAWTC	3 cut(s)	92, 200, 464
PflMI	CCANNNNNTGG	1 cut(s)	420
PkrI	GCNGC	1 cut(s)	445
PleI	GAGTC	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	69
PspN4I	GGNNCC	2 cut(s)	321, 338
PspOMI	GGGCCC	1 cut(s)	319
PspPI	GGNCC	2 cut(s)	319, 320
PsuI	RGATCY	1 cut(s)	303
RseI	CAYNNNNRTG	1 cut(s)	644
SatI	GCNGC	1 cut(s)	444
Sau3AI	GATC	4 cut(s)	148, 240, 272, 303
Sau96I	GGNCC	2 cut(s)	319, 320
SchI	GAGTC	1 cut(s)	70
SduI	GDGCHC	3 cut(s)	323, 554, 616
SfaNI	GCATC	1 cut(s)	499
SfcI	CTRYAG	1 cut(s)	737
SmiMI	CAYNNNNRTG	1 cut(s)	644
SmlI	CTYRAG	3 cut(s)	14, 144, 165
SmoI	CTYRAG	3 cut(s)	14, 144, 165
Sse9I	AATT	6 cut(s)	276, 607, 619, 634, 676, 715
SsiI	CCGC	1 cut(s)	444
StyI	CCWWGG	3 cut(s)	315, 438, 496
TaaI	ACNGT	2 cut(s)	386, 523
TaiI	ACGT	2 cut(s)	267, 314
TasI	AATT	6 cut(s)	276, 607, 619, 634, 676, 715
TauI	GCSGC	1 cut(s)	446
TfiI	GAWTC	3 cut(s)	92, 200, 464
TseFI	GTSAC	1 cut(s)	78
Tsp45I	GTSAC	1 cut(s)	78
TspDTI	ATGAA	6 cut(s)	153, 233, 240, 572, 628, 708
Van91I	CCANNNNNTGG	1 cut(s)	420
XmnI	GAANNNNTTC	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.