Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000293

Physical Location & Seq

Genomic Coordinates Reverse (-)

64752278 .. 64753064

Gene Structure 787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015337

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGAATAGAAAAGTTAAAACTCTCACAATAGATGAAGGGGAAATCGTGGAGGCTCGAGGCCACATTCTAAGGGCCACCGGCCGGAATGACAGCCACAGTAAGGTCTGCACCGCCAAAGGCCCCAGGGACCGCCTCGTCCAGTTCACCGCCCACACCGCCATTCAATTCTACAACGGGCCCAGCAAGGCCATCGATTGGCTCATCAAGAAAGCCAAGCCCGCAATAGACGAGCTCGACGAGCTGCCGCCGTGGAACCCGAACTCAATTTCTGTTCAGACAACATCTTCTCCGAAGGTGCCGAAATCCACTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

105

Amino Acids

11.49

Weight (kDa)

9.61

Isoelectric Point (pI)

32.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	27 - 94	2.7e-14	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53230 AT1G53230 AT3G15030 AT3G15030 AT3G15030 AT3G15030
fragaria_vesca	FvH4_3g08160 FvH4_3g18740
malus_domestica	MD03G1239100.v1.1 MD05G1305100.v1.1 MD11G1258900.v1.1
prunus_persica	Prupe.4G057100_v2.0.a1 Prupe.4G171100_v2.0.a1
pyrus_communis	pycom03g18430 pycom11g22850
rosa_chinensis	RchiOBHm_Chr4g0418991 RchiOBHm_Chr4g0420791 RchiOBHm_Chr5g0010031 RchiOBHm_Chr5g0031541
rosa_laevigata	RLG00000013430 RLG00000015337 RLG00000031720 RLG00000033322 RLG00000035733
rosa_multiflora	Rmu_co8053810.1_g000001 Rmu_co8138760.1_g000001 Rmu_co8175406.1_g000001 Rmu_co8265597.1_g000001 Rmu_sc0000090.1_g000007 Rmu_sc0000115.1_g000024 Rmu_sc0000288.1_g000014 Rmu_sc0000324.1_g000023 Rmu_sc0000423.1_g000011 Rmu_sc0000438.1_g000001 Rmu_sc0000516.1_g000051 Rmu_sc0000524.1_g000034 Rmu_sc0000530.1_g000034 Rmu_sc0000550.1_g000022 Rmu_sc0000631.1_g000026 Rmu_sc0000861.1_g000047 Rmu_sc0000861.1_g000062 Rmu_sc0001036.1_g000040 Rmu_sc0001258.1_g000009 Rmu_sc0001353.1_g000029 Rmu_sc0001374.1_g000048 Rmu_sc0001426.1_g000012 Rmu_sc0001526.1_g000046 Rmu_sc0001684.1_g000011 Rmu_sc0001689.1_g000026 Rmu_sc0001706.1_g000025 Rmu_sc0002017.1_g000004 Rmu_sc0002060.1_g000008 Rmu_sc0002260.1_g000006 Rmu_sc0002275.1_g000007 Rmu_sc0002340.1_g000004 Rmu_sc0003556.1_g000029 Rmu_sc0003610.1_g000044 Rmu_sc0003690.1_g000002 Rmu_sc0004189.1_g000026 Rmu_sc0004250.1_g000041 Rmu_sc0004435.1_g000005 Rmu_sc0004621.1_g000008 Rmu_sc0004947.1_g000031 Rmu_sc0004972.1_g000008 Rmu_sc0005791.1_g000017 Rmu_sc0005812.1_g000007 Rmu_sc0006170.1_g000002 Rmu_sc0006297.1_g000003 Rmu_sc0006435.1_g000006 Rmu_sc0006455.1_g000002 Rmu_sc0006792.1_g000018 Rmu_sc0007904.1_g000002 Rmu_sc0008081.1_g000008 Rmu_sc0008698.1_g000010 Rmu_sc0011940.1_g000008 Rmu_sc0012051.1_g000001 Rmu_sc0013001.1_g000012 Rmu_sc0017665.1_g000008 Rmu_sc0021290.1_g000002 Rmu_sc0023961.1_g000001 Rmu_sc0025647.1_g000001 Rmu_sc0030540.1_g000003 Rmu_sc0030935.1_g000001 Rmu_sc0030936.1_g000002 Rmu_sc0040629.1_g000001 Rmu_sc0040630.1_g000001 Rmu_ssc0000018.1_g000003 Rmu_ssc0000093.1_g000019 Rmu_ssc0000372.1_g000047 Rmu_ssc0000472.1_g000004
rosa_roxburghii	Rroxscaffold_1G00010400 Rroxscaffold_1G00048760 Rroxscaffold_1G00066140 Rroxscaffold_2G00087730 Rroxscaffold_2G00114360 Rroxscaffold_2G00129990 Rroxscaffold_5G00344710 Rroxscaffold_5G00356030 Rroxscaffold_5G00377440 Rroxscaffold_6G00391660 Rroxscaffold_7G00175440 Rroxscaffold_7G00190080 Rroxscaffold_7G00190400
rosa_rugosa	Rorug02G0056400 Rorug02G0133600 Rorug02G0314600 Rorug02G0407100 Rorug02G0623700 Rorug03G0182200.1 Rorug03G0369500.1 Rorug04G0335800 Rorug04G0422400.1 Rorug04G0448800 Rorug05G0127000 Rorug06G0289000 Rorug07G0333100
rosa_samantha	Rh5AG079500 Rh5CG086900 Rh5DG075000 Rh5DG240600 Rh6DG251700
rosa_wichuraiana	Rw5G007360 Rw5G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	134
AccB1I	GGYRCC	1 cut(s)	295
AccB7I	CCANNNNNTGG	1 cut(s)	195
AciI	CCGC	6 cut(s)	111, 130, 147, 156, 219, 245
AcoI	YGGCCR	1 cut(s)	79
AfiI	CCNNNNNNNGG	3 cut(s)	81, 100, 195
AgsI	TTSAA	1 cut(s)	164
AjnI	CCWGG	1 cut(s)	122
AluBI	AGCT	2 cut(s)	232, 241
AluI	AGCT	2 cut(s)	232, 241
Alw21I	GWGCWC	1 cut(s)	234
Ama87I	CYCGRG	1 cut(s)	54
AoxI	GGCC	6 cut(s)	58, 72, 79, 118, 176, 186
ApaI	GGGCCC	1 cut(s)	180
ApeKI	GCWGC	1 cut(s)	241
AspS9I	GGNCC	5 cut(s)	72, 119, 127, 176, 177
AsuHPI	GGTGA	1 cut(s)	136
AvaI	CYCGRG	1 cut(s)	54
AvaII	GGWCC	1 cut(s)	127
BaeGI	GKGCMC	1 cut(s)	180
BanI	GGYRCC	1 cut(s)	295
BanII	GRGCYC	2 cut(s)	180, 234
Bbv12I	GWGCWC	1 cut(s)	234
BbvI	GCAGC	1 cut(s)	228
BccI	CCATC	1 cut(s)	197
BceAI	ACGGC	1 cut(s)	232
BcgI	CGANNNNNNTGC	2 cut(s)	172, 206
BciT130I	CCWGG	1 cut(s)	124
BisI	GCNGC	2 cut(s)	242, 245
BlsI	GCNGC	2 cut(s)	243, 246
Bme1390I	CCNGG	1 cut(s)	124
Bme18I	GGWCC	1 cut(s)	127
BmeT110I	CYCGRG	1 cut(s)	54
BmgT120I	GGNCC	5 cut(s)	72, 119, 127, 176, 177
BmiI	GGNNCC	5 cut(s)	121, 128, 178, 254, 297
BmrFI	CCNGG	1 cut(s)	124
Bsa29I	ATCGAT	1 cut(s)	192
BsaJI	CCNNGG	3 cut(s)	122, 123, 248
BsaXI	ACNNNNNCTCC	2 cut(s)	271, 301
Bsc4I	CCNNNNNNNGG	3 cut(s)	81, 100, 195
Bse118I	RCCGGY	1 cut(s)	77
Bse1I	ACTGG	1 cut(s)	139
BseBI	CCWGG	1 cut(s)	124
BseCI	ATCGAT	1 cut(s)	192
BseDI	CCNNGG	3 cut(s)	122, 123, 248
BseLI	CCNNNNNNNGG	3 cut(s)	81, 100, 195
BseNI	ACTGG	1 cut(s)	139
BseSI	GKGCMC	1 cut(s)	180
BseX3I	CGGCCG	1 cut(s)	79
BseXI	GCAGC	1 cut(s)	228
BseYI	CCCAGC	1 cut(s)	179
BsgI	GTGCAG	1 cut(s)	91
Bsh1285I	CGRYCG	1 cut(s)	82
BshFI	GGCC	6 cut(s)	60, 74, 81, 120, 178, 188
BshNI	GGYRCC	1 cut(s)	295
BshVI	ATCGAT	1 cut(s)	192
BsiEI	CGRYCG	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	234
BsiHKCI	CYCGRG	1 cut(s)	54
BsiSI	CCGG	2 cut(s)	78, 82
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	3 cut(s)	81, 100, 195
BsmFI	GGGAC	1 cut(s)	140
BsnI	GGCC	6 cut(s)	60, 74, 81, 120, 178, 188
BsoBI	CYCGRG	1 cut(s)	54
Bsp120I	GGGCCC	1 cut(s)	176
Bsp1286I	GDGCHC	2 cut(s)	180, 234
BspACI	CCGC	6 cut(s)	111, 130, 147, 156, 219, 245
BspANI	GGCC	6 cut(s)	60, 74, 81, 120, 178, 188
BspDI	ATCGAT	1 cut(s)	192
BspLI	GGNNCC	5 cut(s)	121, 128, 178, 254, 297
BspT107I	GGYRCC	1 cut(s)	295
BsrFI	RCCGGY	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	139
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	3 cut(s)	122, 123, 248
Bst2UI	CCWGG	1 cut(s)	124
Bst4CI	ACNGT	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	1 cut(s)	68
BstDSI	CCRYGG	1 cut(s)	248
BstMCI	CGRYCG	1 cut(s)	82
BstMWI	GCNNNNNNNGC	3 cut(s)	155, 218, 238
BstNI	CCWGG	1 cut(s)	124
BstSCI	CCNGG	1 cut(s)	122
BstSLI	GKGCMC	1 cut(s)	180
BstV1I	GCAGC	1 cut(s)	228
BstZI	CGGCCG	1 cut(s)	79
Bsu15I	ATCGAT	1 cut(s)	192
BsuRI	GGCC	6 cut(s)	60, 74, 81, 120, 178, 188
BsuTUI	ATCGAT	1 cut(s)	192
BtgI	CCRYGG	1 cut(s)	248
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	1 cut(s)	306
Cac8I	GCNNGC	1 cut(s)	219
Cfr10I	RCCGGY	1 cut(s)	77
Cfr13I	GGNCC	5 cut(s)	72, 119, 127, 176, 177
ClaI	ATCGAT	1 cut(s)	192
DdeI	CTNAG	1 cut(s)	68
DrdI	GACNNNNNNGTC	1 cut(s)	134
DseDI	GACNNNNNNGTC	1 cut(s)	134
EaeI	YGGCCR	1 cut(s)	79
EagI	CGGCCG	1 cut(s)	79
Ecl136II	GAGCTC	1 cut(s)	232
EclXI	CGGCCG	1 cut(s)	79
Eco24I	GRGCYC	2 cut(s)	180, 234
Eco47I	GGWCC	1 cut(s)	127
Eco52I	CGGCCG	1 cut(s)	79
Eco53kI	GAGCTC	1 cut(s)	232
Eco88I	CYCGRG	1 cut(s)	54
EcoICRI	GAGCTC	1 cut(s)	232
EcoO109I	RGGNCCY	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	122
EcoT38I	GRGCYC	2 cut(s)	180, 234
FaiI	YATR	1 cut(s)	313
FaqI	GGGAC	1 cut(s)	140
FauI	CCCGC	1 cut(s)	226
Fnu4HI	GCNGC	2 cut(s)	242, 245
FriOI	GRGCYC	2 cut(s)	180, 234
Fsp4HI	GCNGC	2 cut(s)	242, 245
GluI	GCNGC	2 cut(s)	242, 245
GsaI	CCCAGC	1 cut(s)	183
HaeIII	GGCC	6 cut(s)	60, 74, 81, 120, 178, 188
HapII	CCGG	2 cut(s)	78, 82
HpaII	CCGG	2 cut(s)	78, 82
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	1 cut(s)	144
Hpy188I	TCNGA	2 cut(s)	276, 291
Hpy188III	TCNNGA	1 cut(s)	205
Hpy8I	GTNNAC	1 cut(s)	144
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	2 cut(s)	29, 286
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4V	TGCA	2 cut(s)	108, 311
HpyF10VI	GCNNNNNNNGC	3 cut(s)	155, 218, 238
HpyF3I	CTNAG	1 cut(s)	68
LpnPI	CCDG	6 cut(s)	91, 95, 109, 136, 152, 193
Lsp1109I	GCAGC	1 cut(s)	228
MboII	GAAGA	1 cut(s)	276
MhlI	GDGCHC	2 cut(s)	180, 234
MluCI	AATT	2 cut(s)	164, 264
MnlI	CCTC	3 cut(s)	43, 50, 143
MseI	TTAA	1 cut(s)	15
MspI	CCGG	2 cut(s)	78, 82
MspR9I	CCNGG	1 cut(s)	124
MvaI	CCWGG	1 cut(s)	124
MwoI	GCNNNNNNNGC	3 cut(s)	155, 218, 238
NlaIV	GGNNCC	5 cut(s)	121, 128, 178, 254, 297
PaeR7I	CTCGAG	1 cut(s)	54
PasI	CCCWGGG	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PflMI	CCANNNNNTGG	1 cut(s)	195
PkrI	GCNGC	2 cut(s)	243, 246
Psp124BI	GAGCTC	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	122
PspFI	CCCAGC	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	122
PspN4I	GGNNCC	5 cut(s)	121, 128, 178, 254, 297
PspOMI	GGGCCC	1 cut(s)	176
PspPI	GGNCC	5 cut(s)	72, 119, 127, 176, 177
PspXI	VCTCGAGB	1 cut(s)	54
SacI	GAGCTC	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	2 cut(s)	242, 245
Sau96I	GGNCC	5 cut(s)	72, 119, 127, 176, 177
ScrFI	CCNGG	1 cut(s)	124
SduI	GDGCHC	2 cut(s)	180, 234
SetI	ASST	4 cut(s)	105, 234, 243, 297
Sfr274I	CTCGAG	1 cut(s)	54
SinI	GGWCC	1 cut(s)	127
SlaI	CTCGAG	1 cut(s)	54
SmlI	CTYRAG	1 cut(s)	54
SmoI	CTYRAG	1 cut(s)	54
Sse9I	AATT	2 cut(s)	164, 264
SsiI	CCGC	6 cut(s)	111, 130, 147, 156, 219, 245
SstI	GAGCTC	1 cut(s)	234
StyD4I	CCNGG	1 cut(s)	122
TaaI	ACNGT	1 cut(s)	98
TaqI	TCGA	3 cut(s)	55, 192, 234
TasI	AATT	2 cut(s)	164, 264
TauI	GCSGC	1 cut(s)	247
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	1 cut(s)	313
TseI	GCWGC	1 cut(s)	241
TspDTI	ATGAA	2 cut(s)	17, 48
TspRI	CASTG	1 cut(s)	313
Van91I	CCANNNNNTGG	1 cut(s)	195
VpaK11BI	GGWCC	1 cut(s)	127
XhoI	CTCGAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.